These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11851#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 662 fasta sequence [GCTGCAACAATGGCCACCTCTCCTATGCTCTTCCTTGTCTCCCTCCTACTAGTACTAGTCGCCGCCGCCACTGGCGACGAGGCATCGCCGT-CGAACGCGGCGGCGCCGGCGGCCC--GTGCTGGTCGGCGGGAGGACGGAGATCAGGGACGTGGGCAGCAACAAGGCGGTGCAGTCGCTGGGCCGCTTCGCCGTCGCCGAGCACAACGCCGCCTCCGCACGGCGGCTCCGGCGGCCCCGCGAACCCCGTCCCGGTGAAGCTCGCGTTCGCACGCGTCGTGGAGGCGCAGAAGCAGGTCGTCTCCGGCGTGGCCTACTACCTCAAGGTCGCCGCGAGCGCGAGGGACCC-CC-GCGGCGGCGCCGCCGCCGGCGGTGACCGGGTGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAATCCAAGGAGCTCGTCTCCTTCACGCCTGCTTCTTCTACCAAATAATCATGCTCAAATATATGTATTAGTTTCACTCTAATTATATTAATTATTACTAGTTGGACTTTACTCCCTCCGTCTAATAAAAAATCAACCCTAGTACGGATGTAATACATTATAGTACTACGAATCAGACATCCGGTACCATAGTTTTTTATGGAACGGAGATATTAGTTTTTTATGGGACGGATGGAATATTACGAAGCA] [+] EMBL OS0297A [GCTGCAACAATGGCCACCTCTCCTATGCTCTTCCTTGTCTCCCTCCTACTAGTACTAGTCGCCGCCGCCACTGGCGACGAGGCATCGCCGT CGAACGCGGCGGCGCCGGCGGCCC GTGCTGGTCGGCGGGAGGACGGAGATCAGGGACGTGGGCAGCAACAAGGCGGTGCAGTCGCTGGGCCGCTTCGCCGTCGCCGAGCACAACGCCGCCTCCGCACGGCGGCTCCGGCGGCCCCGCGAACCCCGTCCCGGTGAAGCTTGCGTTCGAACGCGTCGTGGAGGCGCAGAAGCAGGTCGTCTNCGGCGTGGCCTACTAACTCAAGGTCGCCGCGAGCG ] [+] EMBL OSC25031 [ CAATGGCCACCTCTCCTATGCTCTTCCTTGTCTCCCTCCTACTAGTACTAGTNGCCGCCGCCACTGGCGACGAGGCATCGNCGTCCGAACGCGGCGGCGCCGGCGGCGCNNTTNCTGGTCGGCGGGAGGACGGAGATCAGGGACGTGGGCAGCAACAAGGCGGTGCAGTCGCTGGGCCGNTTCGCCGTCGCC ] [+] EMBL AK063869 [ AAGCTCGCGTTCGCACGCGTCGTGGAGGCGCAGAAGCAGGTCGTCTCCGGCGTGGCCTACTACCTCAAGGTCGCCGCGAGCGCGAGGGACCC CC GCGGCGGCGCCGCCGCCGGCGGTGACCGGGTGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAATCCAAGGAGCTCGTCTCCTTCACGCCTGCTTCTTCTACCAAATAATCATGCTCAAATATATGTATTAGTTTCACTCTAATTATATTAATTATTACTAGTTGGACTTTACTCCCTCCGTCTAATAAAAAATCAACCCTAGTACGGATGTAATACATTATAGTACTACGAATCAGACATCCGGTACCATAGTTTTTTATGGAACGGAGATA ] [+] EMBL AK102139 [ AAGCTCGCGTTCGCACGCGTCGTGGAGGCGCAGAAGCAGGTCGTCTCCGGCGTGGCCTACTACCTCAAGGTCGCCGCGAGCGCGAGGGACCC CC GCGGCGGCGCCGCCGCCGGCGGTGACCGGGTGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAATCCAAGGAGCTCGTCTCCTTCACGCCTGCTTCTTCTACCAAATAATCATGCTCAAATATATGTATTAGTTTCACTCTAATTATATTAATTATTACTAGTTGGACTTTACTCCCTCCGTCTAATAAAAAATCAACCCTAGTACGGATGTAATACATTATAGTACTACGAATCAGACATCCGGTACCATAGTTTTTTATGGAACGGAGATA ] [+] EMBL AU031350 [ AAGNTC CGTTCGCACGCGTCGTGGAGGCGCAGAAGCAGGTCGTCTCCGGCGTGGCCTACTACCTCAAGGTCGCCGCGAGCGCGAGGGACCCNCCNGC GCGGCGCC CCGCCGGCGGTGACCGGGTGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAATCCAAGGAGCTCGTCTCCTTCACGCCTGCTTCTTCTACCAAATAATCATGCTCAAATATATGTATTAGTTTCACTCTAATTATATTAATTATTACTAGTTGGACTTTAaaaa ] [+] EMBL CA755482 [ AAGCTCGCGTTCGCACGCGTCGTGGAGGCGCAGAAGCAGGTCGTCTCCGGCGTGGCCTACTACCTCAAGGTCGCCGCGAGCGCGAGGGACCC CC GCGGCGGCGCCGCCGCCGGCGGTGACCGGGTGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCANATCCAAGGAGCTCGTCTCCTTCACGCCTGCTTCTTCTACCANATAATCATGCTCANATATATGTATTAGTTTCACTCTAATTATATTAATTATTACTAGGTGGACTTTACTCCCTCCGTCTAATAAAAAATCAACCCTAGTACGGATGTAATACATTATAGTACTACGAATCAGACATCGGGTACCATAGTTTTTTATGGAACGGAGATATTAGTTTTTTATGGGACGGATGGAATATTACGAAGCA] [+] EMBL AU063238 [ CCGGGTGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAATCCAAGGAGCTCGTCTCCTTCACGCCTGCTTCTTCTACCAAATAATCATGCTCAAATATATGTATTAGTTTCACTCTAATTATATTAATTATTACTAGTTGGACTTTACTCCCTCCGTCTAATAAAAAATCAACCCTAGTACGGATGTAAaaa ] consensusID : consensus_11851#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [GCTGCAACAATGGCCACCTCTCCCCTGCTCCTCCTCCTCCTCCTACTAGTCGCCGCCGCCGCTGCTGCCGGCGACGAGGCATCGCTGTCGCCGTCGAACGCGGCTGGCGCCGGCGGCGCCGGCGGCGCCCGTGCTGGTCGGCGGGAGGACGGAGATCAGGGACGTGGGCGGCAACAAGGCGGTGCAGTCGCTGGGCCGCTTCGCCGTCGCCGAGCACAACCGCCGCCTTCGCCATGGCTCCTGCGGGCCCGCCGACCCCGTCCCGGTGAAGATCGCGTTCGCACGCGCCGTGGAGGCGCAGAAGCAAAGTCGTTCCTGCGTGGCCTACTACCTCAAGGGCGTCGCGAGGGGACCCCGCGGGGGGGCCGCCCCCCGGGAACTGGTGTTTGACTCCCCGCGGGGGGTGAAGGACTTGTTCATAGTTCAAAGAGATCTTCTGCTTTCAAGCTCCTGGCTTTAACCAATAATACCCCCTACATATAGATTGTGGCTCCCCCCCACTAATTAATATTACTAGTGGGGCTTTCTT] [+] EMBL BE040903 [GCTGCAACAATGGCCACCTCTCCCCTGCTCCTCCTCCTCCTCCTACTAGTCGCCGCCGCCGCTGCTGCCGGCGACGAGGCATCGCTGTCGCCGTCGAACGCGGCTGGCGCCGGCGGCGCCGGCGGCGCCCGTGCTGGTCGGCGGGAGGACGGAGATCAGGGACGTGGGCGGCAACAAGGCGGTGCAGTCGCTGGGCCGCTTCGCCGTCGCCGAGCACAACCGCCGCCTTCGCCATGGCTCCTGCGGGCCCGCCGACCCCGTCCCGGTGAAGATCGCGTTCGCACGCGCCGTGGAGGCGCAGAAGCAAAGTCGTTCCTGCGTGGCCTACTACCTCAAGGGCGTCGCGAGGGGACCCCGCGGGGGGGCCGCCCCCCGGGAACTGGTGTTTGACTCCCCGCGGGGGGTGAAGGACTTGTTCATAGTTCAAAGAGATCTTCTGCTTTCAAGCTCCTGGCTTTAACCAATAATACCCCCTACATATAGATTGTGGCTCCCCCCCACTAATTAATATTACTAGTGGGGCTTTCTT] consensusID : consensus_11851#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [AGGGACCCGCGCGGCGGCGCCGCCGCCGGCGACCGGGTGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAGTCCAAGGAGCTCGTCTCCTTCACGCCTGCTGCTTCTACCAAATAATCCGCTCAATTATATGTATTAGTTTCACTCTAATTAATTAATTATTACTAGTTGGACTTTACTTGCTCCGTCCAATAAAAAATCAAACCGAGTACGAATGTAACACGTTACTACAAATCAGATATCCGGTACCATATTAGTTTTTTATTAAAAAAAAAAAA] [+] EMBL BE040862 [AGGGACCCGCGCGGCGGCGCCGCCGCCGGCGACCGGGTGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAGTCCAAGGAGCTCGTCTCCTTCACGCCTGCTGCTTCTACCAAATAATCCGCTCAATTATATGTATTAGTTTCACTCTAATTAATTAATTATTACTAGTTGGACTTTACTTGCTCCGTCCAATAAAAAATCAAACCGAGTACGAATGTAACACGTTACTACAAATCAGATATCCGGTACCATATTAGTTTTTTATTAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11851#0 GCTGCAACAATGGCCACCTCTCCTATGCTCTTCCTTGTCTCCCTCCTACTAGTACTAGTC 60 consensus_11851#2 ------------------------------------------------------------ consensus_11851#1 ------------------------------------------------------------ consensus_11851#0 GCCGCCGCCACTGGCGACGAGGCATCGCCGTCGAACGCGGCGGCGCCGGCGGCCCGTGCT 120 consensus_11851#2 ------------------------------------------------------------ consensus_11851#1 ------------------------------------------------------------ consensus_11851#0 GGTCGGCGGGAGGACGGAGATCAGGGACGTGGGCAGCAACAAGGCGGTGCAGTCGCTGGG 180 consensus_11851#2 ------------------------------------------------------------ consensus_11851#1 ------------------------------------------------------------ consensus_11851#0 CCGCTTCGCCGTCGCCGAGCACAACGCCGCCTCCGCACGGCGGCTCCGGCGGCCCCGCGA 240 consensus_11851#2 ------------------------------------------------------------ consensus_11851#1 ------------------------------------------------------------ consensus_11851#0 ACCCCGTCCCGGTGAAGCTCGCGTTCGCACGCGTCGTGGAGGCGCAGAAGCAGGTCGTCT 300 consensus_11851#2 ------------------------------------------------------------ consensus_11851#1 -----GCTGCAACAATGGCCACCTCTCCCCTGCTCCTCCTCCTCCTCCTACTAGTCGCCG 55 consensus_11851#0 CCGGCGTGGCCTACTACCTCAAGGTCGCCGCGAGCGCGAGGGACCCCCGCGGCGGCGCCG 360 consensus_11851#2 --------------------------------------AGGGACCCGCGCGGCGGCGCCG 22 consensus_11851#1 CCGCCGCTGCTGCCGGCGACGAGGCATCGCTGTCGCCGTCGAACGCGGCTGGCGCCGGCG 115 * ** * **** ** ** consensus_11851#0 CCGCCGGCGGTGACCGGG-TGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAATCC 419 consensus_11851#2 CCGCCGGCG---ACCGGG-TGTTCGACGCCGTGGTGGTGGTGAAGGCCTGGCTCAAGTCC 78 consensus_11851#1 GCGCCGGCGGCGCCCGTGCTGGTCGGCGGGAGGACGGAGATCAGGGACGTGGGCGGCAAC 175 ******** *** * ** *** ** * ** * * * ** * * * * consensus_11851#0 AAGGAGCTCGTCTCCTTCACGCCTGCTTCTTCTACCAAATAATCATGCTCAAATATATGT 479 consensus_11851#2 AAGGAGCTCGTCTCCTTCACGCCTGCTGCTTCTACCAAATAATC-CGCTCAATTATATGT 137 consensus_11851#1 AAGGCGGTGCAGTCGCTGGGCCGCTTCGCCGTCGCCGAGCACAACCGCCGCCTTCGCCAT 235 **** * * ** * * * ** * * ** * * consensus_11851#0 ATTAGTTTCACTCTAATTATATTAATTATTACTA-GTTGGACTTTACTCCCTCCGTCTAA 538 consensus_11851#2 ATTAGTTTCACTCTAATTA-ATTAATTATTACTA-GTTGGACTTTACTTGCTCCGTCCAA 195 consensus_11851#1 GGCTCCTGCGGGCCCGCCGACCCCGTCCCGGTGAAGATCGCGTTCGCACGCGCCGTGGAG 295 * * * * * * * * ** * * **** * consensus_11851#0 -TAAAAAATCAACCCTAGTACGGATGTAATACATTATAGTACTACGAATCAGACATCCGG 597 consensus_11851#2 -TAAAAAATCAAACCGAGTACGAATGTAACACGTTA-----CTACAAATCAGATATCCGG 249 consensus_11851#1 GCGCAGAAGCAAAGTC-GTTCCTGCGTGGCCTACTACCT--CAAGGGCGTCGCGAGGGGA 352 * ** *** ** * ** ** * * * * * consensus_11851#0 TACCATA---GTTTTTTATGGAACGGAGATATTAGTTTTTTATGGGACGGATGGAATATT 654 consensus_11851#2 TACCATATTAGTTTTTTATTAAAAAAAAAAAA---------------------------- 281 consensus_11851#1 CCCCGCGGGGGGGCCGCCCCCCGGGAACTGGTGTTTGACTCCCCGCGGGGGGTGAAGGAC 412 ** * * consensus_11851#0 ACGAAGCA---------------------------------------------------- 662 consensus_11851#2 ------------------------------------------------------------ consensus_11851#1 TTGTTCATAGTTCAAAGAGATCTTCTGCTTTCAAGCTCCTGGCTTTAACCAATAATACCC 472 consensus_11851#0 --------------------------------------------------------- consensus_11851#2 --------------------------------------------------------- consensus_11851#1 CCTACATATAGATTGTGGCTCCCCCCCACTAATTAATATTACTAGTGGGGCTTTCTT 529 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||