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Oryza sativa
cluster # 11854 cluster # 11854       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11854#0 length = 1024 sequences # 6  
consensus_11854#1 length = 979 sequences # 1  
consensus_11854#2 length = 483 sequences # 1  
consensus_11854#3 length = 361 sequences # 1  

consensusID : consensus_11854#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1024
fasta sequence
                              [AAGCAAAGTATAGCAGCAAACAAAGCCAGCTTGTCACTGCGCTTCTTTCCTAGTTTCCTTCTCAATTCTCATTCTCAAAAGAGAATATATTGAGCTGATCGAGCTAGATATATAGAAGCACTAGCTAGTTGATCAACAATGGAGCACAGCTTCAAAACCATAGCAGCTGGAGTGGTGATCGTCGTGCTGCTCCTGCAGCAGGCGCCCGTGCTGATTCGGGCCACCGACGCGGACCCTCTCCAGGACTTCTGCGTCGCCGACCTCGACAGCAAGGTCACGGTGAACGGGCACGCGTGCAAGCCGGCGTCGGCCGCCGGCGACGAGTTCCTCTTCTCCTCCAAGATTGCCACGGGCGGCGACGTGAACGCCAACCCGAACGGCTCCAACGTCACGGAGCTCGACGTCGCCGAGTGGCCCGGCGTCAACACGCTCGGCGTGT-CCATGAACCGCGTCGACTTCGCGCCCGGTGGCACCAACCCGCCGCACGTCCACCCGCGCGCCACCGAGGTCGGCATCGTGCTCCGC-GGCGAGCTCCTCGTCGGCATCATCGGCACCCTCGACACCGGGAACAGGTACTACTCCAAGGTGGTCCGTGCCGGCGAGACGTTCGTCATCCCGAGGGGGCTCATGCAC-TTCCAGTTCAACGTTGGCAAGAC-GGAGGCCACCATGGTGGTGTCCTTCAACAGCCAGAACCCCGGCATCGTCTTCGTCCCGCTCACATTGTTCGGCTCCAACCCGCCCATCCCGACGCCGGTGCTTGTCAAGGCACTCCGCGTGGATGCTGGTGTAGTTGAGCTGCTCAAGTCCAAATTCACCGGCGGGTACTAATTAATCCGAGAGCATTTTCATGGTGTTCTCTGCTACCAGCAGCATACTTTAAGCTCCCGTTGTGTGGTTGCATGTTATTGGATTGAATAAACTTTCTCCCATGTTATGGGAATGGAAATAAAATGTAATACTTCTTTGTGATGTTTTTTTTCTCCTTATAATGAATTAAGAATCGTGTATCTTTTCTGTGTAAAAA]

[+] EMBL AK059872             [AAGCAAAGTATAGCAGCAAACAAAGCCAGCTTGTCACTGCGCTTCTTTCCTAGTTTCCTTCTCAATTCTCATTCTCAAAAGAGAATATATTGAGCTGATCGAGCTAGATATATAGAAGCACTAGCTAGTTGATCAACAATGGAGCACAGCTTCAAAACCATAGCAGCTGGAGTGGTGATCGTCGTGCTGCTCCTGCAGCAGGCGCCCGTGCTGATTCGGGCCACCGACGCGGACCCTCTCCAGGACTTCTGCGTCGCCGACCTCGACAGCAAGGTCACGGTGAACGGGCACGCGTGCAAGCCGGCGTCGGCCGCCGGCGACGAGTTCCTCTTCTCCTCCAAGATTGCCACGGGCGGCGACGTGAACGCCAACCCGAACGGCTCCAACGTCACGGAGCTCGACGTCGCCGAGTGGCCCGGCGTCAACACGCTCGGCGTGT CCATGAACCGCGTCGACTTCGCGCCCGGTGGCACCAACCCGCCGCACGTCCACCCGCGCGCCACCGAGGTCGGCATCGTGCTCCGC GGCGAGCTCCTCGTCGGCATCATCGGCACCCTCGACACCGGGAACAGGTACTACTCCAAGGTGGTCCGTGCCGGCGAGACGTTCGTCATCCCGAGGGGGCTCATGCAC TTCCAGTTCAACGTTGGCAAGAC GGAGGCCACCATGGTGGTGTCCTTCAACAGCCAGAACCCCGGCATCGTCTTCGTCCCGCTCACATTGTTCGGCTCCAACCCGCCCATCCCGACGCCGGTGCTTGTCAAGGCACTCCGCGTGGATGCTGGTGTAGTTGAGCTGCTCAAGTCCAAATTCACCGGCGGGTACTAATTAATCCGAGAGCATTTTCATGGTGTTCTCTGCTACCAGCAGCATACTTTAAGCTCCCGTTGTGTGGTTGCATGTTATTGGATTGAATAAACTTTCTCCCATGTTATGGGAATGGAAATAAAATGTAATACTTCTTTGTGATGTTTTTTTTCTCCTTATAATGAATTAAGAATCGTGTATC               ]
[+] EMBL AU057851             [           AGCAGCAAACAAAGCCAGCTTGTCACTGCGCTTCTTTCCTAGTTTCCTTCTCAATTCTCATTCTCAAAAGAGAATATATTGAGCTGATCGAGCTAGATATATAGAAGCACTAGCTAGTTGATCAACAATGGAGCACAGCTTCAAAACCATAGCAGCTGGAGTGGTGATCGTCGTGCTGCTCCTGCAGCAGGCGCCCGTGCTGATTCGGGCCACCGACGCGGACCCTCTCCAGGACTTCTGCGTCGCCGACCTCGACAGCAAGGTCACGGTGAACGGGCACGCGTGCAAGCCGGCGTCGGCCGCCGGCGACGAGTTCCTCTTCTCCTCCAAGATTGCCACGGGCGGCGACGTGAACGCCAACCCGAACGGCTCCAACGTCACGGAGCTCGACGTCGCCGAGTGGCCCGGCGTCAACACGCTCGGCGTGTCCCATGAACCGCGTCGACTTCGCGCCCGGTGGCACCAACCCGCCGCACGTCCAACCGCGCGCCACCGAGGTCGGCATCGTGCTCCGCGGGCGAGCTCCTCGTCGGCATCATCGGNAACCTCGACACCGGGAACAGGTACTACTCCAAGGTGGT CGTGCCGGCGAGACGTTCGTCATCCCGAAGGGGCTCATGCACTTTCCAGTTCAACGTTGGCAAGACGGGAGG CACCATGGTGGTGTCCTTCAACAGCCAGAACCCCGGCAT GTCTT GTC                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA754202             [                                                                     CATTCTCAAAAGAGAATATATTGAGCTGATCGAGCTAGATATATAGAAGCACTAGCTAGTTGATCAACAATGGAGCACAGCTTCAAAACCATAGCAGCTGGAGTGGTGATCGTCGTGCTGCTCCTGCAGCAGGCGCCCGTGCTGATTCGGGCCACCGACGCGGACCCTCTCCAGGACTTCTGCGTCGCCGACCTCGACAGCAAGGTCACGGTGAACGGGCACGCGTGCAAGCCGGCGTCGGCCGCCGGCGACGAGTTCCTCTTCTCCTCCAAGATTGCCACGGGCGGCGACGTGAACGCCAACCCGAACGGCTCCNACGTCACGGAGCTCGACGTCGCCGAGTGGCCCGGCGTCAACACGCTCGGCGTGT CCATGAACCGCGTCGACTTCGCGCCCGGTGGCACCAACCCGCCGCACGTCCACCCGCGCGCCACCGAGGTCGGCATCGTGCTCCGC GGCGAGCTCCTCGTCGGCATCATCGGCACCCTCGACACCGGGAACAGGTACTACTCCCAGGTGGTCCGTGCCGGCAAGACGTTCGTCATCCCGAGGGGGCTCATGCAC TTCCAGTTCAACGTTGGCNAGAC GGA GCCACCATGGTGGTGTCCTTCAACAGCCAGAACCCCGGCATCGTCTTCGTCCCGCTCACATTGTTCGGCTC                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU162784             [                                                                                                                                                                                                                                                                                                                                  AGTTCCTCTTCTCCTCCAAGATTGCCACGGGCGGCGACGTGAACGCCAACCCGAACGGTTCCAACGTCACGGAGCTCGACGTCGCCGAGTGGCCCGGCNTCAACACGCTCGGCGTGT CCATGAACCGCGTCGACTTCGCGCCCGGTGGCACCAACCCGCCGCACGTCCACCCGCGCGCCACCGAGGTCGGCATCGTGCTCCGC GGCGAGCTCCTCGTCGGCATCATCGGCACCCTCGACACCGGGAACAGGTACTACTCCAAGGTGGTCCGTGCCGGCGAGACGTTCGTCATCCCGAGGGGGCTCATGCAC TTCCAGTTCAACGTTGGCAAGAC GGAGGCCACCATGGTGGTGTCCTTCAACAGCCAGAACCCCGGCATCGTCTTCGTCCCGCTCACATTGTTCGGCTCCAACCCGCCCATCCCGACGCCGGTGCTTGTCAAGGCACTCCGCGTGGATGCTGGTGTAGTTGAGCTGCTCAAGTCCAAATTCACCGGCGGGTACTAATTAATCCGAGAGCATTTTCATGGTGTTCTCTGCTACCAGCAGCATACTTTAAGCTCCCGTTGTGTGGTTGCATGTTATTGGATTGAATAAACTTTCTCCCATGTTATGGGAATGGAAATAAAATGTAATACTTCTTTGTGATGTTTTTTTTCTCCTTATAATGAATTAAGAATCGTGTATCTTTTCTGTGTAAAAA]
[+] EMBL CF197293             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTTCGTCCCGCTCACATTGTTCGGCTCCAACCCGCCCATCCCGACGCCGGTGCTTGTCAAGGCGCTTCGCGTGGATGCTGGTGTAGTTGAGCTGCTCAAGTCCAAGTTCACCGGCGGGTACTAATTAATCCGAGAGCATTTTCATGGTGTTCTCTGCTACCAGCAGCATACTTTAAGCTCCCGTTGTGTGGTTGCATGTTATTGGATTGAATAAACTTTCTCCCATGTTATGGGAATGGAAATAAAATGTAATACTTCTTTGTGATGTTTTTTTTCTCCTTATAATGAATTAAGAATCGTGTAaaaaaaa          ]
[+] EMBL CA765041             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TAATCCGAGAGCATTTTCATGGTGTTCTCTGCTACCAGCAGCATACTTTAAGCTCCCGTTGTGTGGTTGCATGTTATTGGATTGAATAAACTTTCTCCCATGTTATGGGAATGGAAATAAAATGTAATACTTCTTTGTGAaaaaaaaa                                               ]


>consensus_11854#0 AAGCAAAGTATAGCAGCAAACAAAGCCAGCTTGTCACTGCGCTTCTTTCCTAGTTTCCTT CTCAATTCTCATTCTCAAAAGAGAATATATTGAGCTGATCGAGCTAGATATATAGAAGCA CTAGCTAGTTGATCAACAATGGAGCACAGCTTCAAAACCATAGCAGCTGGAGTGGTGATC GTCGTGCTGCTCCTGCAGCAGGCGCCCGTGCTGATTCGGGCCACCGACGCGGACCCTCTC CAGGACTTCTGCGTCGCCGACCTCGACAGCAAGGTCACGGTGAACGGGCACGCGTGCAAG CCGGCGTCGGCCGCCGGCGACGAGTTCCTCTTCTCCTCCAAGATTGCCACGGGCGGCGAC GTGAACGCCAACCCGAACGGCTCCAACGTCACGGAGCTCGACGTCGCCGAGTGGCCCGGC GTCAACACGCTCGGCGTGTCCATGAACCGCGTCGACTTCGCGCCCGGTGGCACCAACCCG CCGCACGTCCACCCGCGCGCCACCGAGGTCGGCATCGTGCTCCGCGGCGAGCTCCTCGTC GGCATCATCGGCACCCTCGACACCGGGAACAGGTACTACTCCAAGGTGGTCCGTGCCGGC GAGACGTTCGTCATCCCGAGGGGGCTCATGCACTTCCAGTTCAACGTTGGCAAGACGGAG GCCACCATGGTGGTGTCCTTCAACAGCCAGAACCCCGGCATCGTCTTCGTCCCGCTCACA TTGTTCGGCTCCAACCCGCCCATCCCGACGCCGGTGCTTGTCAAGGCACTCCGCGTGGAT GCTGGTGTAGTTGAGCTGCTCAAGTCCAAATTCACCGGCGGGTACTAATTAATCCGAGAG CATTTTCATGGTGTTCTCTGCTACCAGCAGCATACTTTAAGCTCCCGTTGTGTGGTTGCA TGTTATTGGATTGAATAAACTTTCTCCCATGTTATGGGAATGGAAATAAAATGTAATACT TCTTTGTGATGTTTTTTTTCTCCTTATAATGAATTAAGAATCGTGTATCTTTTCTGTGTA AAAA



consensusID : consensus_11854#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 979
fasta sequence
                              [AGCAAAGTAGCTTCTATACTACTGCCTCTGCCAGGTGCCATTTCATTACTCAAAGAAATTGAGCCGAGACCTGAGGAACATATACAAGAATTGGCTAGCTTTGCTCGTTGATTAGCAATGGAGTGCTTCAAAACTACCCTAGCTGGGGTGGTGCTCGTCGTGCTGCTCCTGCAGCAGGCGCCGGTGCTACGGGCCAACGACCCTGACCCTCTCCAAGACTTCTGCGTCGCCGACCTCGACAGCGAGGTGACGTTGAACGGGTACCCGTGCAAGCCCACGCCGGCGGCCGGCGACGAGTTCCTCTTCTCCTCCAGGTTAGCCACGGGCGGCGACGTGAACGCCAACCCCAACGGCTCCAACGTCACGCAGCTCGACGTCGCGGGGTGGCCCGGGGTGAACACGCTCGGCGTGTCCATGAACCGCATCGACTTCGCGCCCGGCGGCACCAACCCGCCGCACGTCCACCCGCGCGCCACCGAGGTCGGCATCGTGCTACGCGGCGAGCTCCTCGTCGGCATCATCGGCAGCCTCGACACCGGGAACAGGTACTACTCCAGGGTGGTCCGCGGCGGCGAGACGTTCGTCATCCCGCGGGGGCTCATGCACTTCCAGTTCAACGTCGGCAAGACGGAGGCCACCATGGTGGTGTCCTTCAACAGCCAGAACCCTGGCATCGTCTTCGTCCCGCTCACATTGTTCGGCTCCAACCCACCCATCCCGACGCCGGTGCTCGTCAAGGCGCTCCGGGTGGACGCCGGCGTCGTCGAGCTGCTTAAGTCCAAGTTCACCGGTGGGTACTGATCTGACGATCCGAGAGTATTCTTACGCGGATCTAGGTCTCTGCTACTATAGTTGTGCGCAGTGTATGTTATTTGATTGAATAAACTTGTCGTCGCCATCGCAGGCCACGAATGAAACTAAAATGTATTACTACTGCTTTCTTGTGCTTTTCCCCTTCTAAATAAACTATACATAAATG]

[+] EMBL AK103716             [AGCAAAGTAGCTTCTATACTACTGCCTCTGCCAGGTGCCATTTCATTACTCAAAGAAATTGAGCCGAGACCTGAGGAACATATACAAGAATTGGCTAGCTTTGCTCGTTGATTAGCAATGGAGTGCTTCAAAACTACCCTAGCTGGGGTGGTGCTCGTCGTGCTGCTCCTGCAGCAGGCGCCGGTGCTACGGGCCAACGACCCTGACCCTCTCCAAGACTTCTGCGTCGCCGACCTCGACAGCGAGGTGACGTTGAACGGGTACCCGTGCAAGCCCACGCCGGCGGCCGGCGACGAGTTCCTCTTCTCCTCCAGGTTAGCCACGGGCGGCGACGTGAACGCCAACCCCAACGGCTCCAACGTCACGCAGCTCGACGTCGCGGGGTGGCCCGGGGTGAACACGCTCGGCGTGTCCATGAACCGCATCGACTTCGCGCCCGGCGGCACCAACCCGCCGCACGTCCACCCGCGCGCCACCGAGGTCGGCATCGTGCTACGCGGCGAGCTCCTCGTCGGCATCATCGGCAGCCTCGACACCGGGAACAGGTACTACTCCAGGGTGGTCCGCGGCGGCGAGACGTTCGTCATCCCGCGGGGGCTCATGCACTTCCAGTTCAACGTCGGCAAGACGGAGGCCACCATGGTGGTGTCCTTCAACAGCCAGAACCCTGGCATCGTCTTCGTCCCGCTCACATTGTTCGGCTCCAACCCACCCATCCCGACGCCGGTGCTCGTCAAGGCGCTCCGGGTGGACGCCGGCGTCGTCGAGCTGCTTAAGTCCAAGTTCACCGGTGGGTACTGATCTGACGATCCGAGAGTATTCTTACGCGGATCTAGGTCTCTGCTACTATAGTTGTGCGCAGTGTATGTTATTTGATTGAATAAACTTGTCGTCGCCATCGCAGGCCACGAATGAAACTAAAATGTATTACTACTGCTTTCTTGTGCTTTTCCCCTTCTAAATAAACTATACATAAATG]


>consensus_11854#1 AGCAAAGTAGCTTCTATACTACTGCCTCTGCCAGGTGCCATTTCATTACTCAAAGAAATT GAGCCGAGACCTGAGGAACATATACAAGAATTGGCTAGCTTTGCTCGTTGATTAGCAATG GAGTGCTTCAAAACTACCCTAGCTGGGGTGGTGCTCGTCGTGCTGCTCCTGCAGCAGGCG CCGGTGCTACGGGCCAACGACCCTGACCCTCTCCAAGACTTCTGCGTCGCCGACCTCGAC AGCGAGGTGACGTTGAACGGGTACCCGTGCAAGCCCACGCCGGCGGCCGGCGACGAGTTC CTCTTCTCCTCCAGGTTAGCCACGGGCGGCGACGTGAACGCCAACCCCAACGGCTCCAAC GTCACGCAGCTCGACGTCGCGGGGTGGCCCGGGGTGAACACGCTCGGCGTGTCCATGAAC CGCATCGACTTCGCGCCCGGCGGCACCAACCCGCCGCACGTCCACCCGCGCGCCACCGAG GTCGGCATCGTGCTACGCGGCGAGCTCCTCGTCGGCATCATCGGCAGCCTCGACACCGGG AACAGGTACTACTCCAGGGTGGTCCGCGGCGGCGAGACGTTCGTCATCCCGCGGGGGCTC ATGCACTTCCAGTTCAACGTCGGCAAGACGGAGGCCACCATGGTGGTGTCCTTCAACAGC CAGAACCCTGGCATCGTCTTCGTCCCGCTCACATTGTTCGGCTCCAACCCACCCATCCCG ACGCCGGTGCTCGTCAAGGCGCTCCGGGTGGACGCCGGCGTCGTCGAGCTGCTTAAGTCC AAGTTCACCGGTGGGTACTGATCTGACGATCCGAGAGTATTCTTACGCGGATCTAGGTCT CTGCTACTATAGTTGTGCGCAGTGTATGTTATTTGATTGAATAAACTTGTCGTCGCCATC GCAGGCCACGAATGAAACTAAAATGTATTACTACTGCTTTCTTGTGCTTTTCCCCTTCTA AATAAACTATACATAAATG



consensusID : consensus_11854#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence
                              [GCTGGANTNGGTGATGTCGTGCTGCTCCTGCAGCAGGCGCCCGTGCTGATTCNGGCCACCGACGCGGACCCTCTCCAGGACTTCTGCGTCGCCGACCTCGACAGCAAGGTCACGGTGAAACGGGCACGCGTGCAACCGGCGTCNGNCGCCGGCGACNAATTCCTCTTCTCCTCCAAGATTGCCACGGGGCGGNGACGTGAACGCTAACCCNAACGGCTCCAACGTCACGGANCTCGACNTCNCCAAATGGCCCGGGGTCAACACNCTCGGGTNTCATNAACCGNTTAAATCCCNCCCNGGGGGACCAACCCGCCGCANATCCACCCGCGCGCCACCGAAGTCGGNATCNTGCTCCGCNGGGANCTCCTCNTCNGNATCNTCCGNAACCTCCAACACCGGGAAACNGGTTCTACTCCAAGGTGGTCCTGCCCGGGAANACTTCGTCTNCCCANGGGGGTCATGNNCTTCCCATTCAACCTTGGG]

[+] EMBL BE228455             [GCTGGANTNGGTGATGTCGTGCTGCTCCTGCAGCAGGCGCCCGTGCTGATTCNGGCCACCGACGCGGACCCTCTCCAGGACTTCTGCGTCGCCGACCTCGACAGCAAGGTCACGGTGAAACGGGCACGCGTGCAACCGGCGTCNGNCGCCGGCGACNAATTCCTCTTCTCCTCCAAGATTGCCACGGGGCGGNGACGTGAACGCTAACCCNAACGGCTCCAACGTCACGGANCTCGACNTCNCCAAATGGCCCGGGGTCAACACNCTCGGGTNTCATNAACCGNTTAAATCCCNCCCNGGGGGACCAACCCGCCGCANATCCACCCGCGCGCCACCGAAGTCGGNATCNTGCTCCGCNGGGANCTCCTCNTCNGNATCNTCCGNAACCTCCAACACCGGGAAACNGGTTCTACTCCAAGGTGGTCCTGCCCGGGAANACTTCGTCTNCCCANGGGGGTCATGNNCTTCCCATTCAACCTTGGG]


>consensus_11854#2 GCTGGANTNGGTGATGTCGTGCTGCTCCTGCAGCAGGCGCCCGTGCTGATTCNGGCCACC GACGCGGACCCTCTCCAGGACTTCTGCGTCGCCGACCTCGACAGCAAGGTCACGGTGAAA CGGGCACGCGTGCAACCGGCGTCNGNCGCCGGCGACNAATTCCTCTTCTCCTCCAAGATT GCCACGGGGCGGNGACGTGAACGCTAACCCNAACGGCTCCAACGTCACGGANCTCGACNT CNCCAAATGGCCCGGGGTCAACACNCTCGGGTNTCATNAACCGNTTAAATCCCNCCCNGG GGGACCAACCCGCCGCANATCCACCCGCGCGCCACCGAAGTCGGNATCNTGCTCCGCNGG GANCTCCTCNTCNGNATCNTCCGNAACCTCCAACACCGGGAAACNGGTTCTACTCCAAGG TGGTCCTGCCCGGGAANACTTCGTCTNCCCANGGGGGTCATGNNCTTCCCATTCAACCTT GGG



consensusID : consensus_11854#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence
                              [TGTCCTTCAACAGCCAGAACCCTGGCATCGTCTTCGTNCCGCTCACACTCTTCGGTTCCAACCCGCCCATCCCCACACCGGTGCTCACCAAGGCTCTTCGGGTGGAGGCCGGGGTCGTGGAACTTCTCAAGTCCAAGTTCGCCGGTGGGTCTTAACTTCCATGAGCCCCAAATGATCAATATGAATATGTAATTCTATATATCCATGTATGCTGCGAATTTAATAGTACTCGACAGGAGACTATATTCAAGCTTCTGGATAANGCTCGCATTTCATAGTAATAAGATTGAATAAGTTATCCTAGCGGTTCAGCCTTCAGAACCAATGCGAGGACTTAAAATGTATTGCTTCTTATTATTCG]

[-] EMBL CA305834             [TGTCCTTCAACAGCCAGAACCCTGGCATCGTCTTCGTNCCGCTCACACTCTTCGGTTCCAACCCGCCCATCCCCACACCGGTGCTCACCAAGGCTCTTCGGGTGGAGGCCGGGGTCGTGGAACTTCTCAAGTCCAAGTTCGCCGGTGGGTCTTAACTTCCATGAGCCCCAAATGATCAATATGAATATGTAATTCTATATATCCATGTATGCTGCGAATTTAATAGTACTCGACAGGAGACTATATTCAAGCTTCTGGATAANGCTCGCATTTCATAGTAATAAGATTGAATAAGTTATCCTAGCGGTTCAGCCTTCAGAACCAATGCGAGGACTTAAAATGTATTGCTTCTTATTATTCG]


>consensus_11854#3 TGTCCTTCAACAGCCAGAACCCTGGCATCGTCTTCGTNCCGCTCACACTCTTCGGTTCCA ACCCGCCCATCCCCACACCGGTGCTCACCAAGGCTCTTCGGGTGGAGGCCGGGGTCGTGG AACTTCTCAAGTCCAAGTTCGCCGGTGGGTCTTAACTTCCATGAGCCCCAAATGATCAAT ATGAATATGTAATTCTATATATCCATGTATGCTGCGAATTTAATAGTACTCGACAGGAGA CTATATTCAAGCTTCTGGATAANGCTCGCATTTCATAGTAATAAGATTGAATAAGTTATC CTAGCGGTTCAGCCTTCAGAACCAATGCGAGGACTTAAAATGTATTGCTTCTTATTATTC G



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11854#0      AAGCAAAGTATAGCAGCAAACAAAGCCAGCTTGTCACTGCGCTTCTTTCCTAGTTTCCTT 60
consensus_11854#2      ------------------------------------------------------------
consensus_11854#1      -----------------------AGCAAAGTAGCTTCTATACTACTGCCTCTGCCAGGTG 37
consensus_11854#3      ------------------------------------------------------------
                                                                                   

consensus_11854#0      CTCAATTCTCATTCTCAAAAGAGAATATATTGAGCTGATCGAGCTAGATATATAGAAGCA 120
consensus_11854#2      ------------------------------------------------------------
consensus_11854#1      C-CATTTCATTACTCAAAGAAATTGAGCCGAGACCTGAGGAACATATACAAGAATTGGCT 96
consensus_11854#3      ------------------------------------------------------------
                                                                                   

consensus_11854#0      CTAGCTAGTTGATCAACAATGGAGCACAGCTTCAAAACCATAGCAGCTGGAGTGGTGATC 180
consensus_11854#2      ---------------------------------------------GCTGGANTNGGTGAT 15
consensus_11854#1      AGCTTTGCTCGTTGATTAGCAATGGAGTGCTTCAAAACTACCCTAGCTGGGGTGGTGCTC 156
consensus_11854#3      ------------------------------------------------------------
                                                                                   

consensus_11854#0      GTCGTGCTGCTCCTGCAGCAGGCGCCCGTGCTGATTCGGGCCACCGACGCGGACCCTCTC 240
consensus_11854#2      GTCGTGCTGCTCCTGCAGCAGGCGCCCGTGCTGATTCNGGCCACCGACGCGGACCCTCTC 75
consensus_11854#1      GTCGTGCTGCTCCTGCAGCAGGCGCCGGTGCTA---CGGGCCAACGACCCTGACCCTCTC 213
consensus_11854#3      ------------------------------------------------------------
                                                                                   

consensus_11854#0      CAGGACTTCTGCGTCGCCGACCTCGACAGCAAGGTCACGGTGAA-CGGGCACGCGTGCAA 299
consensus_11854#2      CAGGACTTCTGCGTCGCCGACCTCGACAGCAAGGTCACGGTGAAACGGGCACGCGTGCAA 135
consensus_11854#1      CAAGACTTCTGCGTCGCCGACCTCGACAGCGAGGTGACGTTGAA-CGGGTACCCGTGCAA 272
consensus_11854#3      --------------TGTC--CTTCAACAGCCAGAACCCTGGCAT---CGTCTTCGTNCCG 41
                                      * *  * ** ***** **    *    *     *    *** *  

consensus_11854#0      GCCGGCGTCGGCCGCCGGCGACGAGTTCCTCTTCTCCTCCAAGATTGCCACGGG-CGGCG 358
consensus_11854#2      -CCGGCGTCNGNCGCCGGCGACNAATTCCTCTTCTCCTCCAAGATTGCCACGGGGCGGNG 194
consensus_11854#1      GCCCACGCCGGCGGCCGGCGACGAGTTCCTCTTCTCCTCCAGGTTAGCCACGGG-CGGCG 331
consensus_11854#3      -CTCACACTCTTCGGTTCCAACCCGCCCATCCCCACACCGGTGCTCACCAAGGCTCTTCG 100
                        *   *       *    * **     * **  * *  *   * *  *** **  *   *

consensus_11854#0      ACGTGAACGCCAACCCGAACGGCTCCAACGTCACGGAGCTCGACGTCGCCGAGTGGCCCG 418
consensus_11854#2      ACGTGAACGCTAACCCNAACGGCTCCAACGTCACGGANCTCGACNTCNCCAAATGGCCCG 254
consensus_11854#1      ACGTGAACGCCAACCCCAACGGCTCCAACGTCACGCAGCTCGACGTCGCGGGGTGGCCCG 391
consensus_11854#3      G-GTGGAGGCCGGGGTCGTGG-----AACTTCTCA-AGTCCAAGTTCGCCGGTGGGTC-- 151
                         *** * **          *     *** ** *  *   * *  ** *     ** *  

consensus_11854#0      GCGTCAACACGCTCGGCGTGTCCATGAACCGCGTCGACTTCGCGCCCGGTGGCACCA-AC 477
consensus_11854#2      GGGTCAACACNCTCGG-GTNTC-ATNAACCGNTTAAA--TCCCNCCCNGGGGGACCA-AC 309
consensus_11854#1      GGGTGAACACGCTCGGCGTGTCCATGAACCGCATCGACTTCGCGCCCGGCGGCACCA-AC 450
consensus_11854#3      ---TTAACTTCCATGAGCCCCAAATGATCAATATGAATATGTAATTCTATATATCCATGT 208
                          * ***   *  *        ** * *    *  *  *      *       ***   

consensus_11854#0      CCGCCGCACGTCCACCCGCGCGCCACCGAGGTCGGCATCGTGCTCCGCGGCGAGCTCCTC 537
consensus_11854#2      CCGCCGCANATCCACCCGCGCGCCACCGAAGTCGGNATCNTGCTCCGCNGGGANCTCCTC 369
consensus_11854#1      CCGCCGCACGTCCACCCGCGCGCCACCGAGGTCGGCATCGTGCTACGCGGCGAGCTCCTC 510
consensus_11854#3      ATGCTGCGAATTTAATAGTACTCGACAGGAGACTATATT-----------CAAGCTTCTG 257
                         ** **   *  *   *  * * ** *  * *   **              * ** ** 

consensus_11854#0      GTCGGCATCATCGGCACCCTC-GACACCGGGAA-CAGGTACTACTCCAAGGTGGTCCGTG 595
consensus_11854#2      NTCNGNATCNTCCGNAACCTCCAACACCGGGAAACNGGTTCTACTCCAAGGTGGTCC-TG 428
consensus_11854#1      GTCGGCATCATCGGCAGCCTC-GACACCGGGAA-CAGGTACTACTCCAGGGTGGTCCGCG 568
consensus_11854#3      G---ATAANGCTCGCATTTCATAGTAATAAGATTGAATAAGTTATCCTAGCGGTTCAGCC 314
                             *      * *         *    **         *  ***  *  * **    

consensus_11854#0      CCGGCGAGACGTTCGTCATCCCGAGGGGGCTCATGCACTTCCAGTTCAACGTTGGCAAGA 655
consensus_11854#2      CCCGGGAANACTTCGTCTNCCCANGGGGG-TCATGNNCTTCCCATTCAACCTTGGG---- 483
consensus_11854#1      GCGGCGAGACGTTCGTCATCCCGCGGGGGCTCATGCACTTCCAGTTCAACGTCGGCAAGA 628
consensus_11854#3      TTCAGAACCAATGCGAGGACTTAAAATGTATTGC-TTCTTATTATTCG------------ 361
                             *    * **    *       *  *      ***    ***             

consensus_11854#0      CGGAGGCCACCATGGTGGTGTCCTTCAACAGCCAGAACCCCGGCATCGTCTTCGTCCCGC 715
consensus_11854#2      ------------------------------------------------------------
consensus_11854#1      CGGAGGCCACCATGGTGGTGTCCTTCAACAGCCAGAACCCTGGCATCGTCTTCGTCCCGC 688
consensus_11854#3      ------------------------------------------------------------
                                                                                   

consensus_11854#0      TCACATTGTTCGGCTCCAACCCGCCCATCCCGACGCCGGTGCTTGTCAAGGCACTCCGCG 775
consensus_11854#2      ------------------------------------------------------------
consensus_11854#1      TCACATTGTTCGGCTCCAACCCACCCATCCCGACGCCGGTGCTCGTCAAGGCGCTCCGGG 748
consensus_11854#3      ------------------------------------------------------------
                                                                                   

consensus_11854#0      TGGATGCTGGTGTAGTTGAGCTGCTCAAGTCCAAATTCACCGGCGGGTACTAATT----A 831
consensus_11854#2      ------------------------------------------------------------
consensus_11854#1      TGGACGCCGGCGTCGTCGAGCTGCTTAAGTCCAAGTTCACCGGTGGGTACTGATCTGACG 808
consensus_11854#3      ------------------------------------------------------------
                                                                                   

consensus_11854#0      ATCCGAGAGCATTTTCATGGTGTTCTCTGCTACCAGCAGCATACTTTAAGCTCCCGTTGT 891
consensus_11854#2      ------------------------------------------------------------
consensus_11854#1      ATCCGAGAGTATTCTTACGCGGATCTAGGTCTCTGCTACTATAGTT---GTGCGCAGTGT 865
consensus_11854#3      ------------------------------------------------------------
                                                                                   

consensus_11854#0      GTGGTTGCATGTTATTGGATTGAATAAACTTTCTCCCATGTTATGGGAATGGAAATAAAA 951
consensus_11854#2      ------------------------------------------------------------
consensus_11854#1      ATGTTATTTGATTGAATAAACTTGTCGTCGCCATCGCAGGCCAC--GAATGAAACTAAAA 923
consensus_11854#3      ------------------------------------------------------------
                                                                                   

consensus_11854#0      TGTAATACTTCTTTGTGATGTTTTTTTTCTCCTTATAATGAATTAAGAATCGTGTATCTT 1011
consensus_11854#2      ------------------------------------------------------------
consensus_11854#1      TGTATTACTACTGCTTTCTTGTGCTTTTCCCCTTCTAAATAAACTATACATAAATG---- 979
consensus_11854#3      ------------------------------------------------------------
                                                                                   

consensus_11854#0      TTCTGTGTAAAAA 1024
consensus_11854#2      -------------
consensus_11854#1      -------------
consensus_11854#3      -------------
                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)