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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1726 fasta sequence
[CCGCTTCCCCTTCACAATTCAATCCCGCCGCCGACGCCCCCTCCTCCGAAATGGCGTGACGACCTCCGCCCCATCCCCCAAATCCCTCACCTCCGCACTTCAAAATTCCCCACCTCCACTGCCGCTATCCTCCCGCAACCTCACCAAATCCGGCGAATTCCCCCATCGACCAAACCCTAACCCTAGGTGGCCGGCCATGAAGGCGTCGATCAAGTTCCGGGACGACGACCGGCCGCTGGTGCGCGCCAAGGTGCCCGTCGGCGTCCTCGGGCTGCCGTTCCTCACCGGCGTCTCGGCCGGCGGCGGCGGCGACTCGCGGGATCTCCGCTTCGACCTCTCCACCGCCTTCGCCTCCGGCCCGGCGCTCCGCCTCTCGTACCGCCCCAACGACCCGCTCCAGCCCTTCGCGCTCTCCGTCCGTACCGGCCTCGGCCCGCTCGGGTCCCCCGCCCGCGCGCCGTTCGCCATATCCGCCGAGTTCAACCTCCTCTCCTCCAGCCCGCCGGCCTTCTCCCTCCTCTTCAAGCCCCGCATCGGCGACTTCTCGCTCGCCAACTCCGTCATCTCCCCGCCCGCGTCCGCGTCCCCGGCCCCGCCGCTGCCGCCGCCGCCGCCGTCGCACAAGCTGACCGACCTCGCCAACGGCGGCGACGACCACAGGGCGTTCTCGTTCAGCGGGAACGGGTTCGCCGCGAACGTGGCCGCCGCGGGGAAGAGCGGCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGCGCCTCACGACCAGGAGCGTGCTGCCGCTGTGGAGCAAGGCGAGCCTGCGGTTCCAGTGGGGGCTGCGCGTGCCGCCCGAGCTGAAGGCCGCCCTCGCCGACGACGGGTACGGCCGCAAGGCGGGTAACCTGGCCACCAACAAGTTGCCGCTGCTGGTCATGAACAAGATCACAATTGAGCACACGCTGCGGAATCCTCCACATTCCGATGCCGACAAGGGGAAGAAGAAGGATGCGCCGGAATTTCAGACTGAAGGGTTCTCGCTCGTCAAGAGGCAGCTCGAGGTGCTCAATGCAGAGAGCATCATGCTGCGGCGTACCGTGGAGGACCTGCGTGCCG-AGATCGGTGG-AAATAGAG-CCGCCTCAATG-CCCGGT--AAAGGCGACG-CCCG-AAGGATGCCGTCGT-CCCTGGCACCACCACCACCACAACCATTCCTGGCGAAGCCAGATCGCCACGGGAACGGCAAGGAGATGGTGGACAGTGGACCGAAGCCGGTGTCGAATGAGGCGAGCGAGGAGTTGAAGAAGGCACTGGAGGCTCGCCGGAAGTGAAGAAGTATCAGAATTTGCTGAAATTGCAACCCCCTGCAATACTGCAACTTGACATGGCTGCTTGGTTAAAATTTTGCGCTCAATAATACATTTGGTAGGTGCAGTTTGCTTCCCCAGGGAAGCAAATGGAATTCTCATAAGGTGATGTAATAATCTCGCCTTATTTTCCAGGCCGTTGCTTGTGCTAGACTGCTACTAGTAGTATTATTTATCTCCAATTCGCCATGTATAAACTCGCTCTTTTGTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGAAACGCTTTAGTTTTCCAGATCATCCTTATTACAATTTCAATCCATATGATCATTATCTCTGTGCTTGTACCTTTGATCAAAGTTCCTAAACAAAAAATTGATGATAAACAGAGTGCCAGCTTTTGCATTCGGCATGAATGAATTTGA]
[+] EMBL CB673284 [CCGCTTCCCCTTCACAATTCAATCCCGCCGCCGACGCCCCCTCCTCCGAAATGGCGTGACGACCTCCGCCCCATCCCCCAAATCCCTCACCTCCGCACTTCAAAATTCCCCACCTCCACTGCCGCTATCCTCCCGCAACCTCACCAAATCCGGCGAATTCCCCCATCGACCAAACCCTAACCCTAGGTGGCCGGCCATGAAGGCGTCGATCAAGTTCCGGGACGACGACCGGCCGCTGGTGCGCGCCAAGGTGCCCGTCGGCGTCCTCGGGCTGCCGTTCCTCACCGGCGTCTCGGCCGGCGGCGGCGGCGACTCGCGGGATCTCCGCTTCGACCTCTCCACCGCCTTCGCCTCCGGCCCGGCGCTCCGCCTCTCGTACCGCCCCAACGACCCGCTCCAGCCCTTCGCGCTCTCCGTCCGTACCGGCCTCGGCCCGCTCGGGTCCCCCGCCCGCGCGCCGTTCGCCATATCCGCCGAGTTCAACCTCCTCTCCTCCAGCCCGCCGGCCTTCTCCCTCCTCTTCAAGCCCCGCATCGGCGACTTCTCGCTCGCCAACTCCGTCATCTCCCCGCCCGCGTCCGCGTCCCCGGCCCCGCCGCTGCCGCCGCCGCCGCCGTCGCACAAGCTGACCGACCTCGCCAACGGCGGCGACGACCACAGGGCGTTCTCGTTCAGCGGGAACGGGTTCGCCGCGAACGTGGCCGCCGCGGGGAAGAGCGGCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGCGCCTCACGACCNAGAGCG ]
[+] EMBL AK062257 [ ACCTCCGCACTTCAAAATTCCCCACCTCCACTGCCGCTATCCTCCCGCAACCTCACCAAATCCGGCGAATTCCCCCATCGACCAAACCCTAACCCTAGGTGGCCGGCCATGAAGGCGTCGATCAAGTTCCGGGACGACGACCGGCCGCTGGTGCGCGCCAAGGTGCCCGTCGGCGTCCTCGGGCTGCCGTTCCTCACCGGCGTCTCGGCCGGCGGCGGCGGCGACTCGCGGGATCTCCGCTTCGACCTCTCCACCGCCTTCGCCTCCGGCCCGGCGCTCCGCCTCTCGTACCGCCCCAACGACCCGCTCCAGCCCTTCGCGCTCTCCGTCCGTACCGGCCTCGGCCCGCTCGGGTCCCCCGCCCGCGCGCCGTTCGCCATATCCGCCGAGTTCAACCTCCTCTCCTCCAGCCCGCCGGCCTTCTCCCTCCTCTTCAAGCCCCGCATCGGCGACTTCTCGCTCGCCAACTCCGTCATCTCCCCGCCCGCGTCCGCGTCCCCGGCCCCGCCGCTGCCGCCGCCGCCGCCGTCGCACAAGCTGACCGACCTCGCCAACGGCGGCGACGACCACAGGGCGTTCTCGTTCAGCGGGAACGGGTTCGCCGCGAACGTGGCCGCCGCGGGGAAGAGCGGCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGCGCCTCACGACCAGGAGCGTGCTGCCGCTGTGGAGCAAGGCGAGCCTGCGGTTCCAGTGGGGGCTGCGCGTGCCGCCCGAGCTGAAGGCCGCCCTCGCCGACGACGGGTACGGCCGCAAGGCGGGTAACCTGGCCACCAACAAGTTGCCGCTGCTGGTCATGAACAAGATCACAATTGAGCACACGCTGCGGAATCCTCCACATTCCGATGCCGACAAGGGGAAGAAGAAGGATGCGCCGGAATTTCAGACTGAAGGGTTCTCGCTCGTCAAGAGGCAGCTCGAGGTGCTCAATGCAGAGAGCATCATGCTGCGGCGTACCGTGGAGGACCTGCGTGCCG AGATCGGTGG AAATAGAG CCGCCTCAATG CCCGGT AAAGGCGACG CCCG AAGGATGCCGTCGT CCCTGGCACCACCACCACCACAACCATTCCTGGCGAAGCCAGATCGCCACGGGAACGGCAAGGAGATGGTGGACAGTGGACCGAAGCCGGTGTCGAATGAGGCGAGCGAGGAGTTGAAGAAGGCACTGGAGGCTCGCCGGAAGTGAAGAAGTATCAGAATTTGCTGAAATTGCAACCCCCTGCAATACTGCAACTTGACATGGCTGCTTGGTTAAAATTTTGCGCTCAATAATACATTTGGTAGGTGCAGTTTGCTTCCCCAGGGAAGCAAATGGAATTCTCATAAGGTGATGTAATAATCTCGCCTTATTTTCCAGGCCGTTGCTTGTGCTAGACTGCTACTAGTAGTATTATTTATCTCCAATTCGCCATGTATAAACTCGCTCTTTTGTTAGTTGAAGTTTCAGCTCCATTGAGATGTAT ]
[+] EMBL AK064834 [ CAAATCCGGCGAATTCCCCCATCGACCAAACCCTAACCCTAGGTGGCCGGCCATGAAGGCGTCGATCAAGTTCCGGGACGACGACCGGCCGCTGGTGCGCGCCAAGGTGCCCGTCGGCGTCCTCGGGCTGCCGTTCCTCACCGGCGTCTCGGCCGGCGGCGGCGGCGACTCGCGGGATCTCCGCTTCGACCTCTCCACCGCCTTCGCCTCCGGCCCGGCGCTCCGCCTCTCGTACCGCCCCAACGACCCGCTCCAGCCCTTCGCGCTCTCCGTCCGTACCGGCCTCGGCCCGCTCGGGTCCCCCGCCCGCGCGCCGTTCGCCATATCCGCCGAGTTCAACCTCCTCTCCTCCAGCCCGCCGGCCTTCTCCCTCCTCTTCAAGCCCCGCATCGGCGACTTCTCGCTCGCCAACTCCGTCATCTCCCCGCCCGCGTCCGCGTCCCCGGCCCCGCCGCTGCCGCCGCCGCCGCCGTCGCACAAGCTGACCGACCTCGCCAACGGCGGCGACGACCACAGGGCGTTCTCGTTCAGCGGGAACGGGTTCGCCGCGAACGTGGCCGCCGCGGGGAAGAGCGGCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGCGCCTCACGACCAGGAGCGTGCTGCCGCTGTGGAGCAAGGCGAGCCTGCGGTTCCAGTGGGGGCTGCGCGTGCCGCCCGAGCTGAAGGCCGCCCTCGCCGACGACGGGTACGGCCGCAAGGCGGGTAACCTGGCCATCAACAAGTTGCCGCTGCTGGTCATGAACAAGATCACAATTGAGCACACGCTGCGGAATCCTCCACATTCCGATGCCGACAAGGGGAAGAAGAAGGATGCGCCGGAATTTCAGACTGAAGGGTTCTCGCTCGTCAAGAGGCAGCTCGAGGTGCTCAATGCAGAGAGCATCATGCTGCGGCGTACCGTGGAGGACCTGCGTGCCG AGATCGGTGG AAATAGAG CCGCCTCAATG CCCGGT AAAGGCGACG CCCG AAGGATGCCGTCGT CCCTGGCACCACCACCACCACAACCATTCCTGGCGAAGCCAGATCGCCACGGGAACGGCAAGGAGATGGTGGACAGTGGACCGAAGCCGGTGTCGAATGAGGCGAGCGAGGAGTTGAAGAAGGCACTGGAGGCTCGCCGGAAGTGAAGAAGTATCAGAATTTGCTGAAATTGCAACCCCCTGCAATACTGCAACTTGACATGGCTGCTTGGTTAAAATTTTGCGCTCAATAATACATTTGGTAGGTGCAGTTTGCTTCCCCAGGGAAGCAAATGGAATTCTCATAAGGTGATGTAATAATCTCGCCTTATTTTCCAGGCCGTTGCTTGTGCTAGACTGCTACTAGTAGTATTATTTATCTCCAATTCGCCATGTATAAACTCGCTCTTTTGTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGAAACGCTTTAGTTTTCCAGATCATCCTTATTACAATTTCAATCCATATGATCATTATCTCTGTGCTTGTACCTTTGATCAAAGTTCCTAAACAAAAAATTGATGATAAACAGAGTGCCAGCTTTTGCATTCGGCATGAATGAATTTGA]
[-] EMBL CB673285 [ TTGCCGCTGCTGGTCATGAACAAGATCACAATTGAGCACACGCTGCGGAATCCTCCACATTCCGATGCCGACAAGGGGAAGAAGAAGGATGCGCCGGAATTTCAGACTGAAGGGTTCTCGCTCGTCAAGAGGCAGCTCGAGGTGCTCAATGCAGAGAGCATCATGCTGCGGCGTACCGTGGAGGACCTGCGTGCCG AGATCGGTGG AAATAGAG CCGCCTCAATG CCCGGT AAAGGCGACG CCCG AAGGATGCCGTCGT CCTTGGCACCACCACCACCACAACCATTCCTGGGGAAGCCAGATCGCCACGGGAACGGCAAGGAGATGGTGGACAGTGGACCGAAGCCGGTGTCGAATGAGGCGAGCGAGGAGTTGAAGAAGGCACTGGAGGCTCGCCGGAAGTGAAGAAGTATCAGAATTTGCTGAAATTGCAACCCCCTGCAATACTGCAACTTGACATGGCTGCTTGGTTAAAATTTTGCGCTCAATAATACATTTGGTAGGTGCAGTTTGCTTCCCCAGGGAAGCAAATGGAATTCTCATAAGGTGATGTAATAATCTCCCCTTATTTTCCAGGCCGTTGCTTGTGCTAGACTGCTACTAGTAGTATTATTTATCTCCAATTCGCCATGTATAAACTCGCTCTTTTGTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGAAACGCTT ]
[+] EMBL BI813344 [ gcCCGAAGATCGGTGGCCAATAGAGCCCGCCTCAATGCCCCGGTTAAAAGGCGACGCCCCGAAAGGAATCCGTCGTCCCCTGGCACCACCACCACCACAACCATTCCTGGCGAAGCCAGATCGCCACGGGAACGGCAAGGAGATGGTGGACAGTGGACCGAAGCCGGTGTCGAATGAGGCGAGCGAGGAGTTGAAGAAGGCACTGGAGGCTCGCCGGAAGTGAAGAAGTATCAGAATTTGCTGAAATTGCAACCCCCTGCAATACTGCAACTTGACATGGCTGCTTGGTTAAAATTTTGCGCTC ATAATACATTTGGTAGGTGCAGTTTGCTTCCCCAGGGAAGCAAATGGAATTCTCATAAGGTGATGTAATAATCTCGCCTTATTTTCCAGGCCGTTGCTTGTGCTAGACTGCTACTAGTAGTATTATTTATCTCC ATTCGCCATGTATAAACTCGCTCTTTTGTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGAAACGCTTTAGTTTTCCAGATCATCCTTATTAC ATTTCAATCCAaaaaaaa ]
consensusID : consensus_11865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1406 fasta sequence
[CCAATCCATCCAGCCCAAGTCCATCTCCCACCCTTCCACCACTACCCACATCGTCTCGCCGCCGTCGCCGCCGCCGGCGTGACCTCCGCCGCAAATCCGCAGCCCCCACCACCGCCACCCAAAGCTCTCATCCCGCATGAAGGCGTCGATCAAGTTCCGCGACGACGACCGGCCGCTGCTGCGTGCCAGGGTGCCGATCAGGGTGCTCGGGCTGCCGCTCCACTCCGGCCTCTCCGCCGGCGGCGACCCGCGCGAGCTCCGCCTCGACCTCTCCACCGCCTTCTCCTTCGGCCCGGCGATCCGCCTCTCGTACCGCCCCAATGACCCCGCCCTCCCCTTCTCCGTCTCCGTCCGCGCCGGCGTCGGGCCCCTCGGCTCCCCCGCCCGCGCGCCCTTCTCCCTCGCCGCCGAGTTCAACCTCCTCTCCGGCAACCCCGGATCCCCCGCCTTCTTCCTCCTCCTCAAGCCGCGCCTCGGCGACTTCTCGCTCTCCCACACCCTCCGCTCCTCGCCGCATCCCGGTAATAAGGTCGGGGAGGTCTCCGATGGCGATGGCCATGGGCGCGAGGTGAACTACAAGGCGTTCTCGTTCGCGGCGGCGGGGAAGAGCGGCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGCGGCTCACCACGAGGAGCGTGCTCCCGCTGTGGGGAAGGGCGAGCCTGCGGTTCAGCTGGGGGCTGCGCGCGCCGCCGGAGCTGCAGGCGGCGCTCGCCGCCGACGACGCCATGGTCGGTGCCAGCCGCAGCCGCAAGGGCGGCGCGCGGGTTCCGGTCAGCAAGATGCCCCTGCTGGTCATTGACAAGATCTCCATCGAACAGTCACCTCGCGCCGCCGACAAAACGCGCGGCAACGCGGATTCCTCGCCACCAGCGCCGGCGATTGCTGCCGCCGCCGACGCCGATGCAGCGGACGGCACGGGACGCGGCGGCGAGGGGTTCTCGCTGGTGAGGCGGCAGCTGGAGGCGCTGAACGCGGAGAGCGGGATGCTGCGCCGCGCCGTGGAGGACCTGCGCGCCGAGGTCGGGAGCCGCAGGGCGGCGGTGTCCACCGCCGGCGCACCCGACACCTGGAGGACGCCGCCGGCGCCGCCACAACCAGCACAGCCATACCACTACTCATCTCCGGTGAAGCCGGATCGCCGGGGCAGTGGCAAGGACATGGCCGCAGCCGAGAACGCCACGAAGCCTTCGTCGGATGAGCTTGGCGACGAGTTGAAGAGGGCATTGGAGGCGCGGCTGAGGTGAGAGCTTTGGCATCCAGCCATTGCCAAGAGCTCCACTCCACCACCACGGCTAACCAACCTCACTGTCCGGTGTTGCTGGTACATGCTAGCTTCAGGCTTGTATAATTGAGCATTTCCAATCAAGAAATCATCAG]
[+] EMBL AK072063 [CCAATCCATCCAGCCCAAGTCCATCTCCCACCCTTCCACCACTACCCACATCGTCTCGCCGCCGTCGCCGCCGCCGGCGTGACCTCCGCCGCAAATCCGCAGCCCCCACCACCGCCACCCAAAGCTCTCATCCCGCATGAAGGCGTCGATCAAGTTCCGCGACGACGACCGGCCGCTGCTGCGTGCCAGGGTGCCGATCAGGGTGCTCGGGCTGCCGCTCCACTCCGGCCTCTCCGCCGGCGGCGACCCGCGCGAGCTCCGCCTCGACCTCTCCACCGCCTTCTCCTTCGGCCCGGCGATCCGCCTCTCGTACCGCCCCAATGACCCCGCCCTCCCCTTCTCCGTCTCCGTCCGCGCCGGCGTCGGGCCCCTCGGCTCCCCCGCCCGCGCGCCCTTCTCCCTCGCCGCCGAGTTCAACCTCCTCTCCGGCAACCCCGGATCCCCCGCCTTCTTCCTCCTCCTCAAGCCGCGCCTCGGCGACTTCTCGCTCTCCCACACCCTCCGCTCCTCGCCGCATCCCGGTAATAAGGTCGGGGAGGTCTCCGATGGCGATGGCCATGGGCGCGAGGTGAACTACAAGGCGTTCTCGTTCGCGGCGGCGGGGAAGAGCGGCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGCGGCTCACCACGAGGAGCGTGCTCCCGCTGTGGGGAAGGGCGAGCCTGCGGTTCAGCTGGGGGCTGCGCGCGCCGCCGGAGCTGCAGGCGGCGCTCGCCGCCGACGACGCCATGGTCGGTGCCAGCCGCAGCCGCAAGGGCGGCGCGCGGGTTCCGGTCAGCAAGATGCCCCTGCTGGTCATTGACAAGATCTCCATCGAACAGTCACCTCGCGCCGCCGACAAAACGCGCGGCAACGCGGATTCCTCGCCACCAGCGCCGGCGATTGCTGCCGCCGCCGACGCCGATGCAGCGGACGGCACGGGACGCGGCGGCGAGGGGTTCTCGCTGGTGAGGCGGCAGCTGGAGGCGCTGAACGCGGAGAGCGGGATGCTGCGCCGCGCCGTGGAGGACCTGCGCGCCGAGGTCGGGAGCCGCAGGGCGGCGGTGTCCACCGCCGGCGCACCCGACACCTGGAGGACGCCGCCGGCGCCGCCACAACCAGCACAGCCATACCACTACTCATCTCCGGTGAAGCCGGATCGCCGGGGCAGTGGCAAGGACATGGCCGCAGCCGAGAACGCCACGAAGCCTTCGTCGGATGAGCTTGGCGACGAGTTGAAGAGGGCATTGGAGGCGCGGCTGAGGTGAGAGCTTTGGCATCCAGCCATTGCCAAGAGCTCCACTCCACCACCACGGCTAACCAACCTCACTGTCCGGTGTTGCTGGTACATGCTAGCTTCAGGCTTGTATAATTGAGCATTTCCAATCAAGAAATCATCA ]
[+] EMBL AK106031 [ CCAAGTCCATCTCCCACCCTTCCACCACTACCCACATCGTCTCGCCGCCGTCGCCGCCGCCGGCGTGACCTCCGCCGCAAATCCGCAGCCCCCACCACCGCCACCCAAAGCTCTCATCCCGCATGAAGGCGTCGATCAAGTTCCGCGACGACGACCGGCCGCTGCTGCGTGCCAGGGTGCCGATCAGGGTGCTCGGGCTGCCGCTCCACTCCGGCCTCTCCGCCGGCGGCGACCCGCGCGAGCTCCGCCTCGACCTCTCCACCGCCTTCTCCTTCGGCCCGGCGATCCGCCTCTCGTACCGCCCCAATGACCCCGCCCTCCCCTTCTCCGTCTCCGTCCGCGCCGGCGTCGGGCCCCTCGGCTCCCCCGCCCGCGCGCCCTTCTCCCTCGCCGCCGAGTTCAACCTCCTCTCCGGCAACCCCGGATCCCCCGCCTTCTTCCTCCTCCTCAAGCCGCGCCTCGGCGACTTCTCGCTCTCCCACACCCTCCGCTCCTCGCCGCATCCCGGTAATAAGGTCGGGGAGGTCTCCGATGGCGATGGCCATGGGCGCGAGGTGAACTACAAGGCGTTCTCGTTCGCGGCGGCGGGGAAGAGCGGCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGCGGCTCACCACGAGGAGCGTGCTCCCGCTGTGGGGAAGGGCGAGCCTGCGGTTCAACTGGGGGCTGCGCGCGCCGCCGGAGCTGCAGGCGGCGCTCGCCGCCGACGACGCCATGGTCGGTGCCAGCCGCAGCCGCAAGGGCGGCGCGCGGGTTCCGGTCAGCAAGATGCCCCTGCTGGTCATTGACAAGATCTCCATCGAACAGTCACCTCGCGCCGCCGACAAAACGCGCGGCAACGCGGATTCCTCGCCACCAGCGCCGGCGATTGCTGCCGCCGCCGACGCCGATGCAGCGGACGGCACGGGACGCGGCGGCGAGGGGTTCTCGCTGGTGAGGCGGCAGCTGGAGGCGCTGAACGCGGAGAGCGGGATGCTGCGCCGCGCCGTGGAGGACCTGCGCGCCGAGGTCGGGAGCCGCAGGGCGGCGGTGTCCACCGCCGGCGCACCCGACACCTGGAGGACGCCGCCGGCGCCGCCACAACCAGCACAGCCATACCACTACTCATCTCCGGTGAAGCCGGATCGCCGGGGCAGTGGCAAGGACATGGCCGCAGCCGAGAACGCCACGAAGCCTTCGTCGGATGAGCTTGGCGACGAGTTGAAGAGGGCATTGGAGGCGCGGCTGAGGTGAGAGCTTTGGCATCCAGCCATTGCCAAGAGCTCCACTCCACCACCACGGCTAACCAACCTCACTGTCCGGTGTTGCTGGTACATGCTAGCTTCAGGCTTGTATAATTGAGCATTTCCAATCAAGAAATCATCAG]
consensusID : consensus_11865#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence
[AGAAAACCTGATGATTTCTTGATTGGAAATGCTCAATTATACAAGCCTGAAGCTAGCATGTACCAGCAACACCGGACAGTGAGGTTGGTTAGCCGTGGTGGTGGAGTGGAGCTCTTGGCAATGGCTGGATGCCAAAGCTCTCACCTCAGCCGCGCCTCCAATGCCCTCTTCAACTCGTCGCCAAGCTCATCCGACGAAAGCTTCGTGGCGTTCTCGGCTGCTGCCATGTCTTGCCACTGCCCCGGCATCCGGCTCCCCCTGAAATTTAATTATNGNNTTCTGGCCCTTCCNNTTNCNTGNCNNCTTCTTTTTNTTCCTTCTTTCTNNTTTGTCCCCTCTCTANNCNNTCNTTNTTCNTTTTCTTCCTNCCCCTTTCTCTTCTTTTCCTCTTCTTTNTTNTCCCTCTTCNTCCTTCNTTCNTCTNTCTTTTTCCTCCTCTTCTNTCTCTTTTNTTNTCCNNNTTTTCNCTTCTNNNNNNGNCNNNNTCNCTCCNTGCNTTNTCTNCTCTTCTTCTTCTTCTTTTNCCNCNTTTCCTCTCNCTTTNNTNTCTTNNNTTCNCTTTCATCTTTCTCTNNTTTANCTCNCTCCTCTCNNTTCCTNTCNTTTCNTTNCNCTCTCTNNNCCTTCTCTNTCCCCTT]
[+] EMBL BE229221 [AGAAAACCTGATGATTTCTTGATTGGAAATGCTCAATTATACAAGCCTGAAGCTAGCATGTACCAGCAACACCGGACAGTGAGGTTGGTTAGCCGTGGTGGTGGAGTGGAGCTCTTGGCAATGGCTGGATGCCAAAGCTCTCACCTCAGCCGCGCCTCCAATGCCCTCTTCAACTCGTCGCCAAGCTCATCCGACGAAAGCTTCGTGGCGTTCTCGGCTGCTGCCATGTCTTGCCACTGCCCCGGCATCCGGCTCCCCCTGAAATTTAATTATNGNNTTCTGGCCCTTCCNNTTNCNTGNCNNCTTCTTTTTNTTCCTTCTTTCTNNTTTGTCCCCTCTCTANNCNNTCNTTNTTCNTTTTCTTCCTNCCCCTTTCTCTTCTTTTCCTCTTCTTTNTTNTCCCTCTTCNTCCTTCNTTCNTCTNTCTTTTTCCTCCTCTTCTNTCTCTTTTNTTNTCCNNNTTTTCNCTTCTNNNNNNGNCNNNNTCNCTCCNTGCNTTNTCTNCTCTTCTTCTTCTTCTTTTNCCNCNTTTCCTCTCNCTTTNNTNTCTTNNNTTCNCTTTCATCTTTCTCTNNTTTANCTCNCTCCTCTCNNTTCCTNTCNTTTCNTTNCNCTCTCTNNNCCTTCTCTNTCCCCTT]
consensusID : consensus_11865#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence
[CATTCCTGTTGAAGCCAGATCCCCACGGGAACGGCAAGGAGATGGTGGTCAGTGGCCCGAAGCCGGTGTCGAATTAGGCGAGCGAGGAGTTGAAGAAGGCACTGGCGGCTCACCGGAAGTGAAGAAGTATCAGAATTTGATGAAATTGCAACCCCCTGCAATTCTGCAACTTGACATGGCCGCTTGGTTAAAATTTTGCGCTCAATAATACATTTGCTAGGTGCAGTTTCATTCCCCAGGGAAGCAAAAGGAATTCTCATAAGGTGATGTAATAATCTCGCTTTATCTTCCAGGCCGTGGCTTGTGCTAGACTGCTACTAGTAGTATTATTTATCTCCAATTCCCCATGTATAAACTGGCTCTTTTTTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGAAACAGCTTTAGTTTTCCAGATCATCCTTATCGCAATTTCAATCCATATGATCATTATCTCAATAACAAAAAAGA]
[-] EMBL CB667209 [CATTCCTGTTGAAGCCAGATCCCCACGGGAACGGCAAGGAGATGGTGGTCAGTGGCCCGAAGCCGGTGTCGAATTAGGCGAGCGAGGAGTTGAAGAAGGCACTGGCGGCTCACCGGAAGTGAAGAAGTATCAGAATTTGATGAAATTGCAACCCCCTGCAATTCTGCAACTTGACATGGCCGCTTGGTTAAAATTTTGCGCTCAATAATACATTTGCTAGGTGCAGTTTCATTCCCCAGGGAAGCAAAAGGAATTCTCATAAGGTGATGTAATAATCTCGCTTTATCTTCCAGGCCGTGGCTTGTGCTAGACTGCTACTAGTAGTATTATTTATCTCCAATTCCCCATGTATAAACTGGCTCTTTTTTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGAAACAGCTTTAGTTTTCCAGATCATCCTTATCGCAATTTCAATCCATATGATCATTATCTCAATAACAAAAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11865#0 CCGCTTCCCCTTCACAATTCAATCCCGCCGCCGACGCCCCCTCCTCCGAAATGGCGTGAC 60
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 ------------------------------------------------------------
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 GACCTCCGCCCCATCCCCCAAATCCCTCACCTCCGCACTTCAAAATTCCCCACCTCCACT 120
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 ------------------------------------------------------------
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 GCCGCTATCCTCCCGCAACCTCACCAAATCCGGCGAATTCCCCCATCGACCAAACCCTAA 180
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 ------------------------------------------------------------
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 CCCTAGGTGGCCGGCCATGAAGGCGTCGATCAAGTTCCGGGACGACGACCGGCCGCTGGT 240
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 ------------------------------------------------------------
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 GCGCGCCAAGGTGCCCGTCGGCGTCCTCGGGCTGCCGTTCCTCACCGGCGTCTCGGCCGG 300
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 ---------------CCAATCCATCCAGCCCAAGTCCATCTCCCACCCTTCCACCACTAC 45
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 CGGCGGCGGCGACTCGCGGGATCTCCGCTTCGACCTCTCCACCGCCTTCGCCTCCGGCCC 360
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 CCACATCGTCTCGCCGCCGTCGCCGCCGCCGGCGTGACCTCCGCCGCAAATCCGCAGCCC 105
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 GGCGCTCCGCCTCTCGTACCGCCCCAACGACCCGCTCCAGCCCTTCGCGCTCTCCGTCCG 420
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 CCACCACCGCCACCCAAAGCTCTCATCCCGCATGAAGGCGTCGATCAAGTTCCGCGACGA 165
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 TACCGGCCTCGGCCCGCTCGGGTCCCCCGCCCGCGCGCCGTTCGCCATATCCGCCGAGTT 480
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 CGACCGGCCGCTGCTGCGTGCCAGGGTGCCGATCAGGGTGCTCGGGCTGCCGCTCCACTC 225
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 CAACCTCCTCTCCTCCAGCCCGCCGGCCTTCTCCCTCCTCTTCAAGCCCCGCATCGGCGA 540
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 CGGCCTCTCCGCCGGCGGCGACCCGCGCGAGCTCCGCCTCGACCTCTCCACCGCCTTCTC 285
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 CTTCTCGCTCGCCAACTCCGTCATCTCCCCGCCCG-CGTCCGCGTCCCCGGCCCCGCCGC 599
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 CTTCGGCCCGGCGATCCGCCTCTCGTACCGCCCCAATGACCCCGCCCTCCCCTTCTCCGT 345
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 TGCCGCCGCCGCCGCCGTCGCACAAGCTGACCGACCTCGCCAACGGCGGCGACGACCACA 659
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 CTCCGTCCGCGCCGGCGTCGGGCCCCTCGGCTCCCCCGCCCGCGCGCCCTTCTCCCTCGC 405
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 GGGCGTTCTCGTTCAGCGGGAACGGGTTCGCCGCGAACGTGGCCGCCGCGGGGAAGAGCG 719
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 CGCCGAGTTCAACCTCCTCTCCGGCAACCCCGGATCCCCCGCCTTCTTCCTCCTCCTCAA 465
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 GCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGCGCCTCACGACCAGGAGCGTGCTGCCGC 779
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 GCCGCGCCTCGGCGACTTCTCGCTCTCCCACACCCTCCGCTCCTCGCCGCATCCCGGTAA 525
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 TGTGGAGCAAGGCGAGCCTGCGGTTCCAGTGGGGGCTGCGCGTGCCGCCCGAGCTGAAGG 839
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 TAAGGT-CGGGGAGGTCTCCGATGGCGATGGCCATGGGCGCGAGGTGAACTACAAGGCGT 584
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 CCGCCCTCGCCGACGACGGGTACGGCCGCAAGGCGGGTAACCTGGCCACCAACAAGTTGC 899
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 TCTCGTTCGCGGCGGCGGGGAAGAGCGGCGGCGGGGTCGGCGCGCTGCTGTCCGGGATGC 644
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 CGCTGCTGGTCATGAACAAGATCACAATTGAGCACACGCTGCGGAATCCTCCACATTCCG 959
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 GGCTCACCACGAGGAGCGTGCTCCCGCTGTGGGGAAGGGCGAGCCTGCGGTTCAGCTGGG 704
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 ATGCCGACAAGGGGAAGAAGAAGGATGCGCCGGAATTTCAGACTGAAGGGTTCTCGCTCG 1019
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 GGCTGCGCGCGCCGCCGGAGCTGCAGGCGGCGCTCGCCGCCGACGACGCCATGGTCGGTG 764
consensus_11865#2 ------------------------------------------------------------
consensus_11865#0 TCAAGAGGCAGCTCGAGGTGCTCAATGCAGAGAGCATCATGCTGCGGCGTACCGTGGAGG 1079
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 CCAGCCGCAGCCGCAAGGGCGGCGCGCGGGTTCCGGTCAGCAAGATGCCCCTGCTGGTCA 824
consensus_11865#2 ----------------AGAAAACCTGATGATTTCTTGATTGGAAATGCTCA-ATTATACA 43
consensus_11865#0 ACCTGCGTGCCGAGATCGGTGGAAATAGAGCCGCCTCAATGCCCGGTAAAGGCGACGCCC 1139
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 TTGACAAGATCTCCATCGAACAGTCACCTCGCGCCGCCGACAAAACGCGCGGCAACGCGG 884
consensus_11865#2 AGCCTGAAGCTAGCATGTACCAGCAACACCGGACAGTGAGGTTGGTTAGCCGTGGTGGTG 103
consensus_11865#0 GAAGGATGCCGTCGTCCCTGGCACCACCACCACCACAACCATTCCTGGCGAAGCCAGATC 1199
consensus_11865#3 ---------------------------------------CATTCCTGTTGAAGCCAGATC 21
consensus_11865#1 ATTCCTCGCCACCAGCGCCGGCG--ATTGCTGCCGCCGCCGACGCCGATGCAGC--GGAC 940
consensus_11865#2 GAGTGGAGCTCTTGGCAATGGC----TGGATGCCAAAGCTCTCACCTCAGCCGC---GCC 156
* * ** *
consensus_11865#0 GCCACGGGA----ACGGCAAGGAGAT---GGTGGACAGTGGACCGAAGCCGGTGTCGAAT 1252
consensus_11865#3 CCCACGGGA----ACGGCAAGGAGAT---GGTGGTCAGTGGCCCGAAGCCGGTGTCGAAT 74
consensus_11865#1 GGCACGGGACGCGGCGGCGAGGGGTTCTCGCTGGTGAGGCGGCAGCTGGAGGCGCTGAAC 1000
consensus_11865#2 TCCAATGCCCTCTTCAACTCGTCGCCAA-GCTCATCCGACGAAAGCTTC--GTGGCGTTC 213
** * * * * * * * * * * * * *
consensus_11865#0 GAGGCGAGCGAGGAGTTGAAGAAGGCACTGGAGG-CTCGCCGGAAGTGAAGAAGTATCAG 1311
consensus_11865#3 TAGGCGAGCGAGGAGTTGAAGAAGGCACTGGCGG-CTCACCGGAAGTGAAGAAGTATCAG 133
consensus_11865#1 GCGGAGAGCGGGATGCTGCGCCGCGCCGTGGAGGACCTGCGCGCCGAGGTCGGGAGCCGC 1060
consensus_11865#2 TCGGCTGCTGCCATGTCTTGCCACTGCCCCGGCATCCGGCTCCCCCTGAAATTTAATTAT 273
** * * * * * *
consensus_11865#0 AATTTGCTGAAATTGCAACCCCCTGCA-ATACTGCAACTTGACATGGCTGCTTG-GTTAA 1369
consensus_11865#3 AATTTGATGAAATTGCAACCCCCTGCA-ATTCTGCAACTTGACATGGCCGCTTG-GTTAA 191
consensus_11865#1 AGGGCGGCGGTGT--CCACCGCCGGCGCACCCGACACCTGGAGGACGCCGCCGGCGCCGC 1118
consensus_11865#2 NGNNTTCTGGCCCTTCCNNTTNCNTGNCNNCTTCTTTTTNTTCCTTCTTTCTNNTTTGTC 333
* * * * *
consensus_11865#0 AATTTTGCGCTCAATAATACATTTGGTA------GGTGCAGTTTGCTTCCCCAGGGAAGC 1423
consensus_11865#3 AATTTTGCGCTCAATAATACATTTGCTA------GGTGCAGTTTCATTCCCCAGGGAAGC 245
consensus_11865#1 CACAACCAGCACAGCCATACCACTACTCATCTCCGGTGAAGCCGGAT-CGCCGGGGCAGT 1177
consensus_11865#2 CCCTCTCTANNCNNTCNTTNTTCNTTTTCTT---CCTNCCCCTTTCTCTTCTTTTCCTCT 390
* * * * * *
consensus_11865#0 AAATGGAATTCTCATAAGGTGATGTAATAATCTCGCCTTATTTTCCAGGCCGTTGCTTGT 1483
consensus_11865#3 AAAAGGAATTCTCATAAGGTGATGTAATAATCTCGCTTTATCTTCCAGGCCGTGGCTTGT 305
consensus_11865#1 GGCAAGGA----CATGGCCGCAGCCGAGAACGCCACGAAGCCTTC------GTCGGATGA 1227
consensus_11865#2 TCTTTNTTNTCCCTCTTCNTCCTTCNTTCNTCTNTCTTTTTCCTCCTCTTCTNTCTCTTT 450
* * ** *
consensus_11865#0 GCTAGACTGCTACTAGTAGTAT-TATTTATCTCCAATTCGCCATGTATAAACTCGC-TCT 1541
consensus_11865#3 GCTAGACTGCTACTAGTAGTAT-TATTTATCTCCAATTCCCCATGTATAAACTGGC-TCT 363
consensus_11865#1 GCTTGGCGACGAGTTGAAGAGGGCATTGGAGGCGCGGCTGAGGTGAGAGCTTTGGCATCC 1287
consensus_11865#2 TNTTNTCCNNNTTTTCNCTTCTNNNNNNGNCNNNNTCNCTCCNTGCNTTNTCTNCTCTTC 510
* * * ** * *
consensus_11865#0 TTTGTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGAAAC-GCTTTAGTTTT--CCAGA 1598
consensus_11865#3 TTTTTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGAAACAGCTTTAGTTTT--CCAGA 421
consensus_11865#1 AGCCATTGCCAAGAGCTCCACTCCACCACCACG-GCTAACCAACCTCACTGTC--CGGTG 1344
consensus_11865#2 TTCTTCTTCTTTTNCCNCNTTTCCTCTCNCTTTNNTNTCTTNNNTTCNCTTTCATCTTTC 570
* *** * * * *
consensus_11865#0 TCATCCTTA--TTACAATTTCAATCC-ATATGATC-ATTATCTCTGTGCTTGTACCTTTG 1654
consensus_11865#3 TCATCCTTA--TCGCAATTTCAATCC-ATATGATC-ATTATCTCAATAACAAAAAAGA-- 475
consensus_11865#1 TTGCTGGTACATGCTAGCTTCAGGCTTGTATAATTGAGCATTTCCAATCAAGAAATCATC 1404
consensus_11865#2 TCTNNTTTANCTCNCTCCTCTCNNTTCCTNTCNTTTCNTTNCNCTCTCTNNNCCTTCTCT 630
* ** * * * * * *
consensus_11865#0 ATCAAAGTTCCTAAACAAAAAATTGATGATAAACAGAGTGCCAGCTTTTGCATTCGGCAT 1714
consensus_11865#3 ------------------------------------------------------------
consensus_11865#1 AG---------------------------------------------------------- 1406
consensus_11865#2 NTCCCCTT---------------------------------------------------- 638
consensus_11865#0 GAATGAATTTGA 1726
consensus_11865#3 ------------
consensus_11865#1 ------------
consensus_11865#2 ------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||