cluster # 11867

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Oryza sativa
cluster # 11867 cluster # 11867 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11867#0 length = 761 sequences # 8

consensus_11867#1 length = 206 sequences # 1

consensusID : consensus_11867#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 761
fasta sequence

                              [AATCTCCTCGGCGCGACGCCACGCCACCGACCAACGCGACAAGGCGAGACGACGCGCACGCGACACACAGCCAGCGGAAGCAGCAGCAGGACGACGAGGAGGAGGAGGAGATAGCTTAGATCCCGCTCGCCTCTGATCCCCCC-GGATCCGATCCGAGATCCTCCACCCATGGC-GTCCGGCCGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTCCTCCGCTTCGGATGCT-GCAGC-ATGGAGTTCTGC-ATCTGCTTGCTTCTCACCA-TCCTTGGCTATGTCCCTG-GCATC-ATCTACGC-AGTCTATGTGCTTGTTGCT-CTTGACTCAGACC-AGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCCAC-TTC-AATTCTGTCGAAACCTATGCTCTATCCAGAACAGCCAAGTTCTGC-TGTTGAATTGGTATCTGGTAACTTCGTC-TGGGTTTTTTGATATGGCGTTGTGAATCTTGTGATTATAAAGTAGAAACAGTGGTTCGTATCAAGGAGGACGAGGAGGCACCT-AGTCATTTGGTC--GTTAAATCTCCCTATTCATCTGTTTTGTGCTAAATGTATAATTTTATCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTC-AAACTGTGGTCTGGTCTCCATTCTGTAATTTTGATTCAAGAAAATAAGTTGTTGAGGGTAAAAAAAATTGGTGTTTGTATGTCAATACCGTTGCAATTCTTGCCTAT]

[+] EMBL AB030211             [AATCTCCTCGGCGCGACGCCACGCCACCGACCAACGCGACAAGGCGAGACGACGCGCACGCGACACACAGCCAGCGGAAGCAGCAGCAGGACGACGAGGAGGAGGAGGAGATAGCTTAGATCCCGCTCGCCTCTGATCCCCCC GGATCCGATCCGAGATCCTCCACCCATGGC GTCCGGCCGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTCCTCCGCTTCGGATGCT GCAGC ATGGAGTTCTGC ATCTGCTTGCTTCTCACCA TCCTTGGCTATGTCCCTG GCATC ATCTACGC AGTCTATGTGCTTGTTGCT CTTGACTCAGACC AGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCCAC TTC AATTCTGTCGAAACCTATGCTCTATCCAGAACAGCCAAGTTCTGC TGTTGAATTGGTATCTGGTAACTTGGTC TGGGTTTTTTGATATGGCGTTGTGAATCTTGTGATTATAAAGTAGAAACAGTGGTTCGTATCAAGGAGGACGAGGAGGCACCT AGTCATTTGGTC  GTTAAATCTCCCTATTCATCTGTTTTGTGCTAAATGTATAATTTTATCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTC AAACTGTGGTCTGGTCTCCATTCTGTAATTTTGATTCAAGAAAATAAGTTGTTGAGGGTAAAAAAAA                                        ]
[+] EMBL CA757219             [                                                    CGCGCACGCGACACACAGCCAGCGGAAGCAGCAGCAGGACGAGGAGGAGGAGGAGGAGATAGCTTAGATCCCGCTCGCCTCTGATCCCCCCAGGATCCGATCCGAGATCCTCCACCCATGGC GTCCGGCCGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTCCTCCGCTTCGGATGCT GCAGC ATGGAGTTCTGC ATCTGCTTGCTTCTCACCA TCCTTGGCTATGTCCCTG GCATC ATCTACGC AGTCTATGTGCTTGTTGCT CTTGACTCAGACC AGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCCAC TTC AATTCTGTCGAAACCTATGCTCTATCCAGAACAGCCAAGTTCTGC TGTTGAATTGGTATCTGGTAACTTCGTC TGGGTTTTTTGATATGGCGTTGTGAATCTTGTGATTATAAAGTAGAAACAGTGGTTCGTATCANGGAGGACGAGGAGGCACCT AGTCATTTGGTC  GTTAAATCTCCCTATTCATCTGTTTTGTGCTAAATGTATCATTTTATCTGGATCTCTTAACTCCTTATTTCAGTCTGTTAAATGCTC AAACTGTGGTCTGGTCTCCATTCTGTAATTTTGATTCAAGAAAATAAGTTG                                                        ]
[+] EMBL C73781               [                                                                                            GACGAGGAGGAGGAGGAGATAGCTTAGATCCCGCTCGCCTCTGATCCCCCC GGATCCGATCCGAGATCCTCCACCCATGGC GTCCGGCCGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTCCTCCGCTTCGGATGCT GCAGC ATGGAGTTCTGC ATCTGCTTGCTTCTCACCA TCCTTGGCTATGTCCCTG GCATC ATCTACGC AGTCTATGTGCTTGTTGCT CTTGACTCAGACC AGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCCACTTTC AATTCTGTCGAAACCTATGCTCTATCCAGAACAGCCAAGTTCTGCTTGTTGAATTGGTATCTGGTAACTTCGTCTTGGGTTTTTTGATATGGCGTTGTGAATCTTGTGATTATAAAG AGGAACAGTGGTT                                                                                                                                                                                                                                             ]
[+] EMBL OSC25552             [                                                                                              tGAGGAGGAGGAGGAGATAGCTTAGATCCCGCTCGCCTCTGATCCCCCC GGATCCGATCCGAGATCCTCCACCCATGGC GTCCGGCCGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATACTCCCGCCCCTCGGCGTCTTCCTCCGCTTCGGATGCT GCAGC ATGGAGTTCTGC ATCTGCTTGCTTCTCACCA TCCTTGGCTATGTCCCTG GCATC ATCTACGC AGTCTATGTGCTTGTTGCT CTTGACTCAGACC AGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCC                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU183291             [                                                                                                                 GCTTAGATCCCGCTCGCCTCTGATCCCCCC GGATCCGATCCGAGATCCTCCACCCATGGCAGTCCGGCCGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTCCTCCGCTTCGGATGCT GCAGC ATGGAGTTCTGC ATCTGCTTGCTTCTCACCA TCCTTGGCTATGTCCCTG GCATC ATCTACGC AGTCTATGTGCTTGTTGCT CTTGACTCAGACC AGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCCAC TTC AATTCTGTCGAAACCTATGCTCTATCCAGAACAGCCAAGTTCTGC TGTTGAATTGGTATCTGGTAACTTCGTC TGGGTTTTTTGATATGGCGTTGTGAATCTTGTGATTATAAAGT                                                                                                                                                                                                                                                          ]
[+] EMBL AK062410             [                                                                                                                              TCGCCTCTGATCCCCCC GGATCCGATCCGAGATCCTCCACCCATGGC GTCCGGCCGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTCCTCCGCTTCGGATGCT GCAGC ATGGAGTTCTGC ATCTGCTTGCTTCTCACCA TCCTTGGCTATGTCCCTG GCATC ATCTACGC AGTCTATGTGCTTGTTGCT CTTGACTCAGACC AGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCCAC TTC AATTCTGTCGAAACCTATGCTCTATCCAGAACAGCCAAGTTCTGC TGTTGAATTGGTATCTGGTAACTTCGTC TGGGTTTTTTGATATGGCGTTGTGAATCTTGTGATTATAAAGTAGAAACAGTGGTTCGTATCAAGGAGGACGAGGAGGCACCT AGTCATTTGGTC  GTTAAATCTCCCTATTCATCTGTTTTGTGCTAAATGTATAATTTTATCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTC AAACTGTGGTCTGGTCTCCATTCTGTAATTTTGATTCAAGAAAATAAGTTGTTGAGGGTAAATATTATTGGTG                                  ]
[+] EMBL CB681118             [                                                                                                                                                                                 CCGGCCCTTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTCCTCCGCTTCGGATGCT GCAGC ATGGAGTTCTGC ATCTGCTTGCTTCTCACCA TCCTTGGCTATGTCCCTG GCATC ATCTACGC AGTCTATGTGCTTGTTGCT CTTGACTCAGACC AGTACCAGAGGGAATATCATACCCTTGCTTAGGCAGTCCAC TTC AATTCTGTCGAAACCTATGCTCTATCCAGAACAGCCAAGTTCTGC TGTTGAATTGGTATCTGGTAACTTCGTC TGGGTTTTTTGATATGGCGTTGTGAATCTTGTGATTATAAAGTAGAAACAGTGGTTCGTATCAAGGAGGACGAGGAGGCACCT AGTCATTTGGTC  GTTAAATCTCCCTATTCATCTGTTTTGTGCTAAATGTATAATTTTATCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTC AAACTGTGGTCTGGTCTCCATTCTGTAATTTTGATTCAAGAAAATAAGTTGTTGAGGGTAAATATTATTGGTGTTTGTATGTCAATACCGTTGCAATTCTTGCCTAT]
[+] EMBL BI798084             [                                                                                                                                                                                                                                               gTCCTCCGCTTCGGATGCTGGCAGCAATGGAGTTCTGCAATCTGCTTGCTTCTCACCAGTCC TGGCTATGTCCCTGCGCATCAATCTACCCAAGTCTATGTCCTT TTGCTCCTTGACTCAGACCAAGTACCAGAGGGAATATCATACCCTTGCTTAGCCAGTCCAC TTCAAATTCTGTCGAAACCTATGCTCTATCCAGAACAACCAAGTTCT C TGTTGAATTGGTATCTGGTAACTTCGTC TGGGTTTTTTGATATGGC TTGTGAATCTTGTGATTATAAAGTAGAAACAGTGGTTCGTATCAAGGAGGACGAGGAGGCACCTCAGTCATTTGGTCGTGTTAAATCTCCCTATTCATCTGTTTTGTGCTAAATGTATCATTTTATCTGCATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTCAAAACTGTGGTCTGGTCTCCATTCTGTAATTTTGATTCAACCACA AAGTTGTTGAGGGTAAAAAAAAaa                                      ]




>consensus_11867#0
AATCTCCTCGGCGCGACGCCACGCCACCGACCAACGCGACAAGGCGAGACGACGCGCACG
CGACACACAGCCAGCGGAAGCAGCAGCAGGACGACGAGGAGGAGGAGGAGATAGCTTAGA
TCCCGCTCGCCTCTGATCCCCCCGGATCCGATCCGAGATCCTCCACCCATGGCGTCCGGC
CGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTC
CTCCGCTTCGGATGCTGCAGCATGGAGTTCTGCATCTGCTTGCTTCTCACCATCCTTGGC
TATGTCCCTGGCATCATCTACGCAGTCTATGTGCTTGTTGCTCTTGACTCAGACCAGTAC
CAGAGGGAATATCATACCCTTGCTTAGGCAGTCCACTTCAATTCTGTCGAAACCTATGCT
CTATCCAGAACAGCCAAGTTCTGCTGTTGAATTGGTATCTGGTAACTTCGTCTGGGTTTT
TTGATATGGCGTTGTGAATCTTGTGATTATAAAGTAGAAACAGTGGTTCGTATCAAGGAG
GACGAGGAGGCACCTAGTCATTTGGTCGTTAAATCTCCCTATTCATCTGTTTTGTGCTAA
ATGTATAATTTTATCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTCAAACTG
TGGTCTGGTCTCCATTCTGTAATTTTGATTCAAGAAAATAAGTTGTTGAGGGTAAAAAAA
ATTGGTGTTTGTATGTCAATACCGTTGCAATTCTTGCCTAT

consensusID : consensus_11867#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [TTGGTCGTTAAATNNCCCTATTCATCTGTTTTGTGCTAAATGTATAATTTTNTCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTCAAACTGTGGTCTGGTCTCCATTNTGTAATTTTGATTCAAGAAAATAAGTTGTTGNGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU031254             [TTGGTCGTTAAATNNCCCTATTCATCTGTTTTGTGCTAAATGTATAATTTTNTCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTCAAACTGTGGTCTGGTCTCCATTNTGTAATTTTGATTCAAGAAAATAAGTTGTTGNGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11867#1
TTGGTCGTTAAATNNCCCTATTCATCTGTTTTGTGCTAAATGTATAATTTTNTCTGGATC
TCTTGACTCCTTATTTCAGTCTGTTAAATGCTCAAACTGTGGTCTGGTCTCCATTNTGTA
ATTTTGATTCAAGAAAATAAGTTGTTGNGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11867#0      AATCTCCTCGGCGCGACGCCACGCCACCGACCAACGCGACAAGGCGAGACGACGCGCACG 60
consensus_11867#1      ------------------------------------------------------------
                                                                                   

consensus_11867#0      CGACACACAGCCAGCGGAAGCAGCAGCAGGACGACGAGGAGGAGGAGGAGATAGCTTAGA 120
consensus_11867#1      ------------------------------------------------------------
                                                                                   

consensus_11867#0      TCCCGCTCGCCTCTGATCCCCCCGGATCCGATCCGAGATCCTCCACCCATGGCGTCCGGC 180
consensus_11867#1      ------------------------------------------------------------
                                                                                   

consensus_11867#0      CGGTGCTGCACGTTCCTCGAGATCCTGCTCGCCATCATCCTCCCGCCCCTCGGCGTCTTC 240
consensus_11867#1      ------------------------------------------------------------
                                                                                   

consensus_11867#0      CTCCGCTTCGGATGCTGCAGCATGGAGTTCTGCATCTGCTTGCTTCTCACCATCCTTGGC 300
consensus_11867#1      ------------------------------------------------------------
                                                                                   

consensus_11867#0      TATGTCCCTGGCATCATCTACGCAGTCTATGTGCTTGTTGCTCTTGACTCAGACCAGTAC 360
consensus_11867#1      ------------------------------------------------------------
                                                                                   

consensus_11867#0      CAGAGGGAATATCATACCCTTGCTTAGGCAGTCCACTTCAATTCTGTCGAAACCTATGCT 420
consensus_11867#1      ------------------------------------------------------------
                                                                                   

consensus_11867#0      CTATCCAGAACAGCCAAGTTCTGCTGTTGAATTGGTATCTGGTAACTTCGTCTGGGTTTT 480
consensus_11867#1      ------------------------------------------------------------
                                                                                   

consensus_11867#0      TTGATATGGCGTTGTGAATCTTGTGATTATAAAGTAGAAACAGTGGTTCGTATCAAGGAG 540
consensus_11867#1      ------------------------------------------------------------
                                                                                   

consensus_11867#0      GACGAGGAGGCACCTAGTCATTTGGTCGTTAAATCTCCCTATTCATCTGTTTTGTGCTAA 600
consensus_11867#1      ---------------------TTGGTCGTTAAATNNCCCTATTCATCTGTTTTGTGCTAA 39
                                            *************  ************************

consensus_11867#0      ATGTATAATTTTATCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTCAAACTG 660
consensus_11867#1      ATGTATAATTTTNTCTGGATCTCTTGACTCCTTATTTCAGTCTGTTAAATGCTCAAACTG 99
                       ************ ***********************************************

consensus_11867#0      TGGTCTGGTCTCCATTCTGTAATTTTGATTCAAGAAAATAAGTTGTTGAGGGTAAAAAAA 720
consensus_11867#1      TGGTCTGGTCTCCATTNTGTAATTTTGATTCAAGAAAATAAGTTGTTGNGGGTAAAAAAA 159
                       **************** ******************************* ***********

consensus_11867#0      ATTGGTGTTTGTATGTCAATACCGTTGCAATTCTTGCCTAT------ 761
consensus_11867#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 206
                       *           *    ** *       **         *