cluster # 11870

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Oryza sativa
cluster # 11870 cluster # 11870 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11870#0 length = 2184 sequences # 8

consensus_11870#1 length = 540 sequences # 1

consensusID : consensus_11870#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2184
fasta sequence

                              [CAACCAACAGTCGGCGCACCAGCAGCTGAGGTTGGAGGAGGAGGAGGAGGCGCCGCCCCTCACCGCACCTCGCGCGGCGCGGGCGCAGGCGGTTGCGAGCGACGGCCTCAGCGGCGGCGGCGGCGGCGGCGGTGGTGGTGAGGAGGAGGAGGAGGAGGAGCGGGGAGAGTGTCGCGGTGTTGTCAGGGTGAGGGGAGTCAGATGCGCGCGGAATGGGGAAGCCCGTCGATGTGGAGCTCGGCGGCGCGGCAGGCCTCGAGATCGCCGGCGGCGGAGGGGGAGGAGGGGGAGGGGTGTGGGCCGTCGCCGGGGCGATCGGCCGCGCCGCGTCGTTCCGGTGCGTGTTCGTGCTCGCGCTCTCCGTGGGAGTCCTCGTCTCGGCGCTGCTGCTCCTCGTGCCCACCCGCGGGCACGGGTTCCTCTCCGACGACCCCGTCGTGCTCGGAGCTGAAATCCAGGTTGGTTTTACCTTGGAAAAGCCAGTTTCATTCCTTGCTGCTCACATGGATAAACTAGGGGGTGACATATTTGAAGAAATTGGTATTCCTAATAGCAAGGTTTCCATTGTGTCAATGCGTTCTTTGACCTCTAAGTACTCCACAAATGTGGTTTTTAGTGTTCTTCCTTCTCCAAAAGAAGCCTCAATAAGTTTGCCTGCCCTAAGTGTGCTGAGATCATCCTTAATAGCGATGATGCTAAATCAGGTGAACCTATCGTTGACAGAACCACTTTTTGGCCATCCATCTTCCGTTGAGCTGTTGAGGTTCCCTGGAGGAATTACAGTAATTCCTGAGCAGTCTGGTTCTGTATGGGCGGATCCTCTTTTCAACTTTGTGTTGAACAATTCCATTTATCAGATCTTGGGTAATATTACAGAGCTAAAGGACCAGTTGAAGCTTGGATTGAACTTGAGGTCCTACGAGAAAGTATATTTGCAGTTCAGGAATGAGATTGGATCTTCAGTTGATGCCCCGGCAACTATTGAGGCATCTGTTCTAGATGGGAGCAGCATTCTTTTACCATATAGATTGAAACAACTAGCTCAGCTAATCAAAGAACCCAATGCAAGGAACCTTGGGCTTAATCACTCTGTATTTGGTAAAGTAAAAGGTGTTCAACTGTCATCATACCTACAGCATTCGATCTCAGATTTATCTCCGAGTCCATCTCCTTCACCATCTCCATCCCCATCCCCATCTCCATCTCCATCTCCATTCCCTTCTTCAAGTGTACCACCATCTTTCTCACCATCTGGGAGCATCCATTACCCTGCACCTCCAACATATATGAACCCAAGTCTTCCTCCTCAAGCTTCACCCCCTTTGCCTGACACAAATCCTTGCTTTCCATGTTTCAATTGTGACCGCTTTTCTTCCGCTGGTAGCCCAACAGGCAAACCACCTTGTTTTCGCAGAGACCCTAAGCTACCTCCATTTATACACTCCCCGCAGCCATCTGTTGCTCCTTCCCCATATCTTTCTCCAGCTTTTCCA-CCAATTCCTGGTCATGT-AGATCCT-CCCAATCATTTACCTGGTGCAGT-CCCTGGACCAACTTATCAAATGATGTCAATA-CCTTCACCCTCATTGCCTGTGTTTCGACCTTCAATGGCTCCATGGAAGAAGCGACGAAAAACCAAGTCCCCCCCTTCAATTGCCCCTTCCCCATATTCTCTCCATTCCTGAAGTGAGACTT-GGCTGGTGCCCT-GGACT-GTTT-GCCTACAGAGTTACCAGTGCACAAGGT-GGTTGT-GGTTGCAAAGTTTGCTTCTTGAAATCTCCTGAAGCATGGAGTTGCAATCGTGAGCGATCGTACTGCAAAGGCAGGTTTATGAATGCAATCATGAGCAATCATACTGCAAAAAGGCAGGTTTTGCTTATCGGTTACTTCTAACTGTATGGTGGTTTCTCGCACTTCAGAGTTGGAGTATAACTGTAGATATAGGTCTGTATTATGCTAATTTACCAGGGTTTTTATGTCACGAAGGTGACTGCCCTACGCCTCTACCAAATATCAAGTTTCTCACCGAAGGGTTGGGTGCTTATGGTAGAGGAGAATGTAATGACTTACCATAGTCGAATTGATGTTGTATCTTGCGATACGACTGTTCGTTTCCTGTAACATCATCATATACTGAGCATAATACGATACATTTACACCCG--AAAATCTGCGACAAAAAAAAAAAAAAAA]

[+] EMBL AK121117             [CAACCAACAGTCGGCGCACCAGCAGCTGAGGTTGGAGGAGGAGGAGGAGGCGCCGCCCCTCACCGCACCTCGCGCGGCGCGGGCGCAGGCGGTTGCGAGCGACGGCCTCAGCGGCGGCGGCGGCGGCGGCGGTGGTGGTGAGGAGGAGGAGGAGGAGGAGCGGGGAGAGTGTCGCGGTGTTGTCAGGGTGAGGGGAGTCAGATGCGCGCGGAATGGGGAAGCCCGTCGATGTGGAGCTCGGCGGCGCGGCAGGCCTCGAGATCGCCGGCGGCGGAGGGGGAGGAGGGGGAGGGGTGTGGGCCGTCGCCGGGGCGATCGGCCGCGCCGCGTCGTTCCGGTGCGTGTTCGTGCTCGCGCTCTCCGTGGGAGTCCTCGTCTCGGCGCTGCTGCTCCTCGTGCCCACCCGCGGGCACGGGTTCCTCTCCGACGACCCCGTCGTGCTCGGAGCTGAAATCCAGGTTGGTTTTACCTTGGAAAAGCCAGTTTCATTCCTTGCTGCTCACATGGATAAACTAGGGGGTGACATATTTGAAGAAATTGGTATTCCTAATAGCAAGGTTTCCATTGTGTCAATGCGTTCTTTGACCTCTAAGTACTCCACAAATGTGGTTTTTAGTGTTCTTCCTTCTCCAAAAGAAGCCTCAATAAGTTTGCCTGCCCTAAGTGTGCTGAGATCATCCTTAATAGCGATGATGCTAAATCAGGTGAACCTATCGTTGACAGAACCACTTTTTGGCCATCCATCTTCCGTTGAGCTGTTGAGGTTCCCTGGAGGAATTACAGTAATTCCTGAGCAGTCTGGTTCTGTATGGGCGGATCCTCTTTTCAACTTTGTGTTGAACAATTCCATTTATCAGATCTTGGGTAATATTACAGAGCTAAAGGACCAGTTGAAGCTTGGATTGAACTTGAGGTCCTACGAGAAAGTATATTTGCAGTTCAGGAATGAGATTGGATCTTCAGTTGATGCCCCGGCAACTATTGAGGCATCTGTTCTAGATGGGAGCAGCATTCTTTTACCATATAGATTGAAACAACTAGCTCAGCTAATCAAAGAACCCAATGCAAGGAACCTTGGGCTTAATCACTCTGTATTTGGTAAAGTAAAAGGTGTTCAACTGTCATCATACCTACAGCATTCGATCTCAGATTTATCTCCGAGTCCATCTCCTTCACCATCTCCATCCCCATCCCCATCTCCATCTCCATCTCCATTCCCTTCTTCAAGTGTACCACCATCTTTCTCACCATCTGGGAGCATCCATTACCCTGCACCTCCAACATATATGAACCCAAGTCTTCCTCCTCAAGCTTCACCCCCTTTGCCTGACACAAATCCTTGCTTTCCATGTTTCAATTGTGACCGCTTTTCTTCCGCTGGTAGCCCAACAGGCAAACCACCTTGTTTTCGCAGAGACCCTAAGCTACCTCCATTTATACACTCCCCGCAGCCATCTGTTGCTCCTTCCCCATATCTTTCTCCAGCTTTTCCA CCAATTCCTGGTCATGT AGATCCT CCCAATCATTTACCTGGTGCAGT CCCTGGACCAACTTATCAAATGATGTCAATA CCTTCACCCTCATTGCCTGTGTTTCGACCTTCAATGGCTCCATGGAAGAAGCGACGAAAAACCAAGTCCCCCCCTTCAATTGCCCCTTCCCCATATTCTCTCCATTCCTGAAGTGAGACTT GGCTGGTGCCCT GGACT GTTT GCCTACAGAGTTACCAGTGCACAAGGT GGTTGT GGTTGCAAAGTTTGCTTCTTGAAATCTCCTGAAGCATGGAGTTGCAATCGTGAGCGATCGTACTGCAAAGGCAGGTTTATGAATGCAATCATGAGCAATCATACTGCAAAAAGGCAGGTTTTGCTTATCGGTTACTTCTAACTGTATGGTGGTTTCTCGCACTTCAGAGTTGGAGTATAACTGTAGATATAGGTCTGTATTATGCTAATTTACCAGGGTTTTTATGTCACGAAGGTGACTGCCCTACGCCTCTACCAAATATCAAGTTTCTCACCGAAGGGTTGGGTGCTTATGGTAGAGGAGAATGTAATGACTTACCATAGTCGAATTGATGTTGTATCTTGCGATACGACTGTTCGTTTCCTGTAACATCATCATATACTGAGCATAATACGATACATTTACACCCG                              ]
[+] EMBL AK101045             [     AACAGTCGGCGCACCAGCAGCTGAGGTTGGAGGAGGAGGAGGAGGCGCCGCCCCTCACCGCACCTCGCGCGGCGCGGGCGCAGGCGGTTGCGAGCGACGGCCTCAGCGGCGGCGGCGGCGGCGGCGGTGGTGGTGAGGAGGAGGAGGAGGAGGAGCGGGGAGAGTGTCGCGGTGTTGTCAGGGTGAGGGGAGTCAGATGCGCGCGGAATGGGGAAGCCCGTCGATGTGGAGCTCGGCGGCGCGGCAGGCCTCGAGATCGCCGGCGGCGGAGGGGGAGGAGGGGGAGGGGTGTGGGCCGTCGCCGGGGCGATCGGCCGCGCCGCGTCGTTCCGGTGCGTGTTCGTGCTCGCGCTCTCCGTGGGAGTCCTCGTCTCGGCGCTGCTGCTCATCGTGCCCACCCGCGGGCACGGGTTCCTCTCCGACGACCCCGTCGTGCTCGGAGCTGAAATCCAGGTTGGTTTTACCTTGGAAAAGCCAGTTTCATTCCTTGCTGCTCACATGGATAAACTAGGGGGTGACATATATGAAGAAATTGGTATTCCTAATAGCAAGGTTTCCATTGTGTCAATGCGTTCTTTGACCTCTAAGTACTCCACAAATGTGGTTTTTAGTGTTCTTCCTTCTCCAAAAGAAGCCTCAATAAGTTTGCCTGCCCTAAGTGTGCTGAGATCATCCTTAATAGCGATGATGCTAAATCAGGTGAACCTATCGTTGACAGAACCACTTTTTGGCCATCCATCTTCCGTTGAGCTGTTGAGGTTCCCTGGAGGAATTACAGTAATTCCTGAGCAGTCTGGTTCTGTATGGGCGGATCCTCTTTTCAACTTTGTGTTGAACAATTCCATTTATCAGATCTTGGGTAATATTACAGAGCTAAAGGACCAGTTGAAGCTTGGATTGAACTTGAGGTCCTACGAGAAAGTATATTTGCAGTTCAGGAATGAGATTGGATCTTCAGTTGATGCCCCGGCAACTATTGAGGCATCTGTTCTAGATGGGAGCAGCATTCTTTTACCATATAGATTGAAACAACTAGCTCAGCTAATCAAAGAACCCAATGCAAGGAACCTTGGGCTTAATCACTCTGTATTTGGTAAAGTAAAAGGTGTTCAACTGTCATCATACCTACAGCATTCGATCTCAGATTTATCTCCGAGTCCATCTCCTTCACCATCTCCATCCCCATCCCCATCTCCATCTCCATCTCCATTCCCTTCTTCAAGTGTACCACCATCTTTCTCACCATCTGGGAGCATCCATTACCCTGCACCTCCAACATATATGAACCCAAGTCTTCCTCCTCAAGCTTCACCCCCTTTGCCTGACACAAATCCTTGCTTTCCATGTTTCAATTGTGACCGCTTTTCTTCCGCTGGTAGCCCAACAGGCAAACCACCTTGTTTTCGCAGAGACCCTAAGCTACCTCCATTTATACACTCCCCGCAGCCATCTGTTGCTCCTTCCCCATATCTTTCTCCAGCTTTTCCA CCAATTCCTGGTCATGT AGATCCT CCCAATCATTTACCTGGTGCAGT CCCTGGACCAACTTATCAAATGATGTCAATA CCTTCACCCTCATTGCCTGTGTTTCGACCTTCAATGGCTCCATGGAAGAAGCGACGAAAAACCAAGTCCCCCCCTTCAATTGCCCCTTCCCCATATTCTCTCCATTCCTGAAGTGAGACTT GGCTGGTGCCCT GGACT GTTT GCCTACAGAGTTACCAGTGCACAAGGT GGTTGT GGTTGCAAAGTTTGCTTCTTGAAATCTCCTGAAGCATGGAGTTGCAATCGTGAGCGATCGTACTGCAAAGGCAGGTTTATGAATGCAATCATGAGCAATCATACTGCAAAAAGGCAGGTTTTGCTTATCGGTTACTTCTAACTGTATGGTGGTTTCTCGCACTTCAGAGTTGGAGTATAACTGTAGATATAGGTCTGTATTATGCTAATTTACCAGGGTTTTTATGTCACGAAGGTGACTGCCCTACGCCTCTACCAAATATCAAGTTTCTCACCGAAGGGTTGGGTGCTTATGGTAGAGGAGAATGTAATGACTTACCATAGTCGAATTGATGTTGTATCTTGCGATACGACTGTTCGTTTCCTGTAACATCATCATATACTGAGCATAATACGATACATTTACACCCG                              ]
[+] EMBL AK105819             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCTTCTCCAAAAGAAGCCTCAATAAGTTTGCCTGCCCTAAGTGTGCTGAGATCATCCTTAATAGCGATGATGCTAAATCAGGTGAACCTATCGTTGACAGAACCACTTTTTGGCCATCCATCTTCCGTTGAGCTGTTGAGGTTCCCTGGAGGAATTACAGTAATTCCTGAGCAGTCTGGTTCTGTATGGGCGGATCCTCTTTTCAACTTTGTGTTGAACAATTCCATTTATCAGATCTTGGGTAATATTACAGAGCTAAAGGACCAGTTGAAGCTTGGATTGAACTTGAGGTCCTACGAGAAAGTATATTTGCAGTTCAGGAATGAGATTGGATCTTCAGTTGATGCCCCGGCAACTATTGAGGCATCTGTTCTAGATGGGAGCAGCATTCTTTTACCATATAGATTGAAACAACTAGCTCAGCTAATCAAAGAACCCAATGCAAGGAACCTTGGGCTTAATCACTCTGTATTTGGTAAAGTAAAAGGTGTTCAACTGTCATCATACCTACAGCATTCGATCTCAGATTTATCTCCGAGTCCATCTCCTTCACCATCTCCATCCCCATCCCCATCTCCATCTCCATCTCCATTCCCTTCTTCAAGTGTACCACCATCTTTCTCACCATCTGGGAGCATCCATTACCCTGCACCTCCAACATATATGAACCCAAGTCTTCCTCCTCAAGCTTCACCCCCTTTGCCTGACACAAATCCTTGCTTTCCATGTTTCAATTGTGACCGCTTTTCTTCCGCTGGTAGCCCAACAGGCAAACCACCTTGTTTTCGCAGAGACCCTAAGCTACCTCCATTTATACACTCCCCGCAGCCATCTGTTGCTCCTTCCCCATATCTTTCTCCAGCTTTTCCA CCAATTCCTGGTCATGT AGATCCT CCCAATCATTTACCTGGTGCAGT CCCTGGACCAACTTATCAAATGATGTCAATA CCTTCACCCTCATTGCCTGTGTTTCGACCTTCAATGGCTCCATGGAAGAAGCGACGAAAAACCAAGTCCCCCCCTTCAATTGCCCCTTCCCCATATTCTCTCCATTCCTGAAGTGAGACTT GGCTGGTGCCCT GGACT GTTT GCCTACAGAGTTACCAGTGCACAAGGT GGTTGT GGTTGCAAAGTTTGCTTCTTGAAATCTCCTGAAGCATGGAGTTGCAATCGTGAGCGATCGTACTGCAAAGGCAGGTTTATGAATGCAATCATGAGCAATCATACTGCAAAAAGGCAGGTTTTGCTTATCGGTTACTTCTAACTGTATGGTGGTTTCTCGCACTTCAGAGTTGGAGTATAACTGTAGATATAGGTCTGTATTATGCTAATTTACCAGGGTTTTTATGTCACGAAGGTGACTGCCCTACGCCTCTACCAAATATCAAGTTTCTCACCGAAGGGTTGGGTGCTTATGGTAGAGGAGAATGTAATGACTTACCATAGTCGAATTGATGTTGTATCTTGCGATACGACTGTTCGTTTCCTGTAACATCATCATATACTGAGCATAATACGATACATTTACACCCG                              ]
[+] EMBL C28344               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGCAGCATTCTTTTACCATATAGATTGAAACAACTAGCTCAGCTAATCAAAGAACCCAATGCAAGGNACCTTGGGCTTAATCACTCTGTATTTGGTAAAGTAAAAGGTGTTCAACTGTCATCATACCTACAGCATTCGATCTCAGATTTATCTCCGAGTCCATCTCCTTCACCATCTCCATCCCCATCCCCATCTCCATCTCCATCTCCATTCCCTTCTTCAAGTGTACCACCATCTTTNTCACCATCTGGGAGCATCCATTACCCTGCACCTCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C72659               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AATCCTTGCTTTCCATGTTTCAATTGTGACCGCTTTTCTTCCGCTGGTAGCCCAACAGGCAAACCACCTTGTTTTCGCAGAGACCCTAAGCTACCTCCATTTATACACTCCCCGCAGCCATCTGTTGCTCCTTCCCCATATCTTTCTCCAGCTTTTCCA CCAATTCCTGGTCATGT AGATCCT CCCAATCATTTACCTGGTGCAGT CCCTGGACCAACTTATCAAATGATGTCAATA CCTTCACCCTCATTGCCTGTGTTTCGACCTTCAATGGCTCCATGGAAGAAGCGACGAAAAACCAAGTCCCCCCCTTCAATTGCCCCTTCCCCATATTCTCTCCATTCCTGAAGTGAGACTTGGGCTGGTGGCCTGGGACTGGTTTGGCCTACAGAGTTACCAGTGCACAAGGTGGGTTGTGGGTTGCAAAGTTTGCNTCTTGNAA                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU082901             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCTTTCTCCANTTTTTCCACCCAATTCCTGGTCATGTAAGATCCTCCCCAATCATTTACCTGGTGCAGTCCCCTGGACCAACTTATCAAATGATGTCAATACCCTTCACCCTCATTGCCTGTGTTTCGACCTTCAATGGCTCCATGGAAGAAGCGACGAAAAACCAAGTCCCCCCCTTCAATTGCCCCTTCCCCATATTCTCTCCATTCCTGAAGTGAGACTT GGCTGGTGCCCT GGACT GTTT GCCTACAGAGTTACCAGTGCACAAGGT GGTTGT GGTTGCAAAGTTTGCTTCTTGAAATCTCCTGAAGCATGGAGTTGCAATCGTGAGCGATCGTACTGCAAAGGCAGGTTTATGAATGCAATCATGAGCAATCATACTGCAAAAAGGCAGGTTTTGCTTATCGGTTACTTCTAACTGTATGGTGGTTTCTCGCACTTCAGAGTTGGAGTATAACTGTAGATATAGGTCTGTATTATGCTAATTTACCAGGGTTTTTATGTCACGAAGGTGACTGCCCTACGCCTCTACCAAATATCAAGTTTCTCACCGAAGGGTTGGGTGCTTATGGTAGAGGAGAATGTAATGACTTACCATAGTCGAATTGATGTTGTATCTTGCGATACGACTGTTCGTTTCCTGTAACATCATCATATACTGAGCATAATACGATACATTTACACCAA  AAAA                        ]
[+] EMBL AU101153             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCA CCAATTCCTGGTCATGT AGATCCT CCCAATCATTTACCTGGTGCAGT CCCTGGACCAACTTATCAAATGATGTCAATA CCTTCACCCTCATTGCCTGTGTTTCGACCTTCAATGGCTCCATGGAAGAAGCGACGAAAAACCAAGTCCCCCCCTTCAATTGCCCCTTCCCCATATTCTCTCCATTCCTGAAGTGAGACTT GGCTGGTGCCCT GGACT GTTT GCCTACAGAGTTACCAGTGCACAAGGT GGTTGT GGTTGCAAAGTTTGCTTCTTGAAATCTCCTGAAGCATGGAGTTGCAATCGTGAGCGATCGTACTGCAAAGGCAGGTTTATGAATGCAATCATGAGCAATCATACTGCAAAAAGGCAGGTTTTGCTTATCGGTTACTTCTAACTGTATGGTGGTTTCTCGCACTTCAGAGTTGGAGTATAACTGTAGATATAGGTCTGTATTATGCTAATTTACCAGGGTTTTTATGTCACGAAGGTGACTGCCCTACGCCTCTACCAAATATCAAGTTTCTCACCGAAGGGTTGGGTGCTTATGGTAGAGGAGAATGTAATGACTTACCATAGTCGAATTGATGTTGTATCTTGCGATACGACTGTTCGTTTCCTGTAACATCATCATATACTGAGCATAATACGATACATTTACACCCG  TCTTTCTGCGACAAAAAAAAAAAAAAAA]
[+] EMBL BQ908029             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CAAAGGCAGGTTTATGAATGCAATCATGAGCAATCATACTGCAAAAAGGCAGGTTTTGCTTATCGGTTACTTCTAACTGTATGGTGGTTTCTCGCACTTCAGAGTTGGAGTATAACTGTAGATATAGGTCTGTATTATGCTAATTTACCAGGGTTTTTATGTCACGAAGGTGACTGCCCTACGCCTCTACCAAATATCAAGTTTCTCACCGAAGGGTTGGGTGCTTATGGTAGAGGAGAATGTAATGACTTACCATAGTCGAATTGATGTTGTATCTTGCGATACGACTGTTCGTTTCCTGTAACATCATCATATACTGAGCATAATACGATACATTTACACCCGTCAAAAaaaaaa                  ]




>consensus_11870#0
CAACCAACAGTCGGCGCACCAGCAGCTGAGGTTGGAGGAGGAGGAGGAGGCGCCGCCCCT
CACCGCACCTCGCGCGGCGCGGGCGCAGGCGGTTGCGAGCGACGGCCTCAGCGGCGGCGG
CGGCGGCGGCGGTGGTGGTGAGGAGGAGGAGGAGGAGGAGCGGGGAGAGTGTCGCGGTGT
TGTCAGGGTGAGGGGAGTCAGATGCGCGCGGAATGGGGAAGCCCGTCGATGTGGAGCTCG
GCGGCGCGGCAGGCCTCGAGATCGCCGGCGGCGGAGGGGGAGGAGGGGGAGGGGTGTGGG
CCGTCGCCGGGGCGATCGGCCGCGCCGCGTCGTTCCGGTGCGTGTTCGTGCTCGCGCTCT
CCGTGGGAGTCCTCGTCTCGGCGCTGCTGCTCCTCGTGCCCACCCGCGGGCACGGGTTCC
TCTCCGACGACCCCGTCGTGCTCGGAGCTGAAATCCAGGTTGGTTTTACCTTGGAAAAGC
CAGTTTCATTCCTTGCTGCTCACATGGATAAACTAGGGGGTGACATATTTGAAGAAATTG
GTATTCCTAATAGCAAGGTTTCCATTGTGTCAATGCGTTCTTTGACCTCTAAGTACTCCA
CAAATGTGGTTTTTAGTGTTCTTCCTTCTCCAAAAGAAGCCTCAATAAGTTTGCCTGCCC
TAAGTGTGCTGAGATCATCCTTAATAGCGATGATGCTAAATCAGGTGAACCTATCGTTGA
CAGAACCACTTTTTGGCCATCCATCTTCCGTTGAGCTGTTGAGGTTCCCTGGAGGAATTA
CAGTAATTCCTGAGCAGTCTGGTTCTGTATGGGCGGATCCTCTTTTCAACTTTGTGTTGA
ACAATTCCATTTATCAGATCTTGGGTAATATTACAGAGCTAAAGGACCAGTTGAAGCTTG
GATTGAACTTGAGGTCCTACGAGAAAGTATATTTGCAGTTCAGGAATGAGATTGGATCTT
CAGTTGATGCCCCGGCAACTATTGAGGCATCTGTTCTAGATGGGAGCAGCATTCTTTTAC
CATATAGATTGAAACAACTAGCTCAGCTAATCAAAGAACCCAATGCAAGGAACCTTGGGC
TTAATCACTCTGTATTTGGTAAAGTAAAAGGTGTTCAACTGTCATCATACCTACAGCATT
CGATCTCAGATTTATCTCCGAGTCCATCTCCTTCACCATCTCCATCCCCATCCCCATCTC
CATCTCCATCTCCATTCCCTTCTTCAAGTGTACCACCATCTTTCTCACCATCTGGGAGCA
TCCATTACCCTGCACCTCCAACATATATGAACCCAAGTCTTCCTCCTCAAGCTTCACCCC
CTTTGCCTGACACAAATCCTTGCTTTCCATGTTTCAATTGTGACCGCTTTTCTTCCGCTG
GTAGCCCAACAGGCAAACCACCTTGTTTTCGCAGAGACCCTAAGCTACCTCCATTTATAC
ACTCCCCGCAGCCATCTGTTGCTCCTTCCCCATATCTTTCTCCAGCTTTTCCACCAATTC
CTGGTCATGTAGATCCTCCCAATCATTTACCTGGTGCAGTCCCTGGACCAACTTATCAAA
TGATGTCAATACCTTCACCCTCATTGCCTGTGTTTCGACCTTCAATGGCTCCATGGAAGA
AGCGACGAAAAACCAAGTCCCCCCCTTCAATTGCCCCTTCCCCATATTCTCTCCATTCCT
GAAGTGAGACTTGGCTGGTGCCCTGGACTGTTTGCCTACAGAGTTACCAGTGCACAAGGT
GGTTGTGGTTGCAAAGTTTGCTTCTTGAAATCTCCTGAAGCATGGAGTTGCAATCGTGAG
CGATCGTACTGCAAAGGCAGGTTTATGAATGCAATCATGAGCAATCATACTGCAAAAAGG
CAGGTTTTGCTTATCGGTTACTTCTAACTGTATGGTGGTTTCTCGCACTTCAGAGTTGGA
GTATAACTGTAGATATAGGTCTGTATTATGCTAATTTACCAGGGTTTTTATGTCACGAAG
GTGACTGCCCTACGCCTCTACCAAATATCAAGTTTCTCACCGAAGGGTTGGGTGCTTATG
GTAGAGGAGAATGTAATGACTTACCATAGTCGAATTGATGTTGTATCTTGCGATACGACT
GTTCGTTTCCTGTAACATCATCATATACTGAGCATAATACGATACATTTACACCCGAAAA
TCTGCGACAAAAAAAAAAAAAAAA

consensusID : consensus_11870#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [ATTCCCTTCTTCAAGTGTACCACCATCTTTCTCACCATCTGGGAGCATCCATTACCCTGCACCTCCAACATATATGAACCCAAGTCTTCCTCCTCAAGCTTCACCCCCTTTGCCTGACACAAATCCTTGCTTTCCATGTTTCAATTGTGACCGCTTTTCTTCCGCTGGTAGCCCAACAGGCAAACCACCTTGTTTTCGCAGAGACCCTAAGCTACCTCCATTTATACACTCCCCGCAGCCATCTGTTGCTCCTTCCCCATATCTTTCTCCAGCTTTTCCACCAATTCCTGGTCATGTAGATCCTCCCAATCATTTACCTGGTGCAGTCCCTGGACCAACTTATCAAATGATGTCAATACCTTCACCCTCATTGCCTGTGTTTCGACCTTCAACGGCTCCATGGAAGAAGCGACGAAAAACCAAGTCCCCCCCTTCAATTGCCCCTTCCCCATATTCTCTCCATTCCTGANNNGNNNNNTGGCTGGTGCCCTGGNCTGNNNGNCTACNNNNNNANNAGTGCNNNNNNNNGTTGTNGTTGNN]

[+] EMBL CF197008             [ATTCCCTTCTTCAAGTGTACCACCATCTTTCTCACCATCTGGGAGCATCCATTACCCTGCACCTCCAACATATATGAACCCAAGTCTTCCTCCTCAAGCTTCACCCCCTTTGCCTGACACAAATCCTTGCTTTCCATGTTTCAATTGTGACCGCTTTTCTTCCGCTGGTAGCCCAACAGGCAAACCACCTTGTTTTCGCAGAGACCCTAAGCTACCTCCATTTATACACTCCCCGCAGCCATCTGTTGCTCCTTCCCCATATCTTTCTCCAGCTTTTCCACCAATTCCTGGTCATGTAGATCCTCCCAATCATTTACCTGGTGCAGTCCCTGGACCAACTTATCAAATGATGTCAATACCTTCACCCTCATTGCCTGTGTTTCGACCTTCAACGGCTCCATGGAAGAAGCGACGAAAAACCAAGTCCCCCCCTTCAATTGCCCCTTCCCCATATTCTCTCCATTCCTGANNNGNNNNNTGGCTGGTGCCCTGGNCTGNNNGNCTACNNNNNNANNAGTGCNNNNNNNNGTTGTNGTTGNN]




>consensus_11870#1
ATTCCCTTCTTCAAGTGTACCACCATCTTTCTCACCATCTGGGAGCATCCATTACCCTGC
ACCTCCAACATATATGAACCCAAGTCTTCCTCCTCAAGCTTCACCCCCTTTGCCTGACAC
AAATCCTTGCTTTCCATGTTTCAATTGTGACCGCTTTTCTTCCGCTGGTAGCCCAACAGG
CAAACCACCTTGTTTTCGCAGAGACCCTAAGCTACCTCCATTTATACACTCCCCGCAGCC
ATCTGTTGCTCCTTCCCCATATCTTTCTCCAGCTTTTCCACCAATTCCTGGTCATGTAGA
TCCTCCCAATCATTTACCTGGTGCAGTCCCTGGACCAACTTATCAAATGATGTCAATACC
TTCACCCTCATTGCCTGTGTTTCGACCTTCAACGGCTCCATGGAAGAAGCGACGAAAAAC
CAAGTCCCCCCCTTCAATTGCCCCTTCCCCATATTCTCTCCATTCCTGANNNGNNNNNTG
GCTGGTGCCCTGGNCTGNNNGNCTACNNNNNNANNAGTGCNNNNNNNNGTTGTNGTTGNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11870#0      CAACCAACAGTCGGCGCACCAGCAGCTGAGGTTGGAGGAGGAGGAGGAGGCGCCGCCCCT 60
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      CACCGCACCTCGCGCGGCGCGGGCGCAGGCGGTTGCGAGCGACGGCCTCAGCGGCGGCGG 120
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      CGGCGGCGGCGGTGGTGGTGAGGAGGAGGAGGAGGAGGAGCGGGGAGAGTGTCGCGGTGT 180
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      TGTCAGGGTGAGGGGAGTCAGATGCGCGCGGAATGGGGAAGCCCGTCGATGTGGAGCTCG 240
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      GCGGCGCGGCAGGCCTCGAGATCGCCGGCGGCGGAGGGGGAGGAGGGGGAGGGGTGTGGG 300
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      CCGTCGCCGGGGCGATCGGCCGCGCCGCGTCGTTCCGGTGCGTGTTCGTGCTCGCGCTCT 360
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      CCGTGGGAGTCCTCGTCTCGGCGCTGCTGCTCCTCGTGCCCACCCGCGGGCACGGGTTCC 420
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      TCTCCGACGACCCCGTCGTGCTCGGAGCTGAAATCCAGGTTGGTTTTACCTTGGAAAAGC 480
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      CAGTTTCATTCCTTGCTGCTCACATGGATAAACTAGGGGGTGACATATTTGAAGAAATTG 540
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      GTATTCCTAATAGCAAGGTTTCCATTGTGTCAATGCGTTCTTTGACCTCTAAGTACTCCA 600
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      CAAATGTGGTTTTTAGTGTTCTTCCTTCTCCAAAAGAAGCCTCAATAAGTTTGCCTGCCC 660
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      TAAGTGTGCTGAGATCATCCTTAATAGCGATGATGCTAAATCAGGTGAACCTATCGTTGA 720
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      CAGAACCACTTTTTGGCCATCCATCTTCCGTTGAGCTGTTGAGGTTCCCTGGAGGAATTA 780
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      CAGTAATTCCTGAGCAGTCTGGTTCTGTATGGGCGGATCCTCTTTTCAACTTTGTGTTGA 840
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      ACAATTCCATTTATCAGATCTTGGGTAATATTACAGAGCTAAAGGACCAGTTGAAGCTTG 900
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      GATTGAACTTGAGGTCCTACGAGAAAGTATATTTGCAGTTCAGGAATGAGATTGGATCTT 960
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      CAGTTGATGCCCCGGCAACTATTGAGGCATCTGTTCTAGATGGGAGCAGCATTCTTTTAC 1020
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      CATATAGATTGAAACAACTAGCTCAGCTAATCAAAGAACCCAATGCAAGGAACCTTGGGC 1080
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      TTAATCACTCTGTATTTGGTAAAGTAAAAGGTGTTCAACTGTCATCATACCTACAGCATT 1140
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      CGATCTCAGATTTATCTCCGAGTCCATCTCCTTCACCATCTCCATCCCCATCCCCATCTC 1200
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      CATCTCCATCTCCATTCCCTTCTTCAAGTGTACCACCATCTTTCTCACCATCTGGGAGCA 1260
consensus_11870#1      -------------ATTCCCTTCTTCAAGTGTACCACCATCTTTCTCACCATCTGGGAGCA 47
                                    ***********************************************

consensus_11870#0      TCCATTACCCTGCACCTCCAACATATATGAACCCAAGTCTTCCTCCTCAAGCTTCACCCC 1320
consensus_11870#1      TCCATTACCCTGCACCTCCAACATATATGAACCCAAGTCTTCCTCCTCAAGCTTCACCCC 107
                       ************************************************************

consensus_11870#0      CTTTGCCTGACACAAATCCTTGCTTTCCATGTTTCAATTGTGACCGCTTTTCTTCCGCTG 1380
consensus_11870#1      CTTTGCCTGACACAAATCCTTGCTTTCCATGTTTCAATTGTGACCGCTTTTCTTCCGCTG 167
                       ************************************************************

consensus_11870#0      GTAGCCCAACAGGCAAACCACCTTGTTTTCGCAGAGACCCTAAGCTACCTCCATTTATAC 1440
consensus_11870#1      GTAGCCCAACAGGCAAACCACCTTGTTTTCGCAGAGACCCTAAGCTACCTCCATTTATAC 227
                       ************************************************************

consensus_11870#0      ACTCCCCGCAGCCATCTGTTGCTCCTTCCCCATATCTTTCTCCAGCTTTTCCACCAATTC 1500
consensus_11870#1      ACTCCCCGCAGCCATCTGTTGCTCCTTCCCCATATCTTTCTCCAGCTTTTCCACCAATTC 287
                       ************************************************************

consensus_11870#0      CTGGTCATGTAGATCCTCCCAATCATTTACCTGGTGCAGTCCCTGGACCAACTTATCAAA 1560
consensus_11870#1      CTGGTCATGTAGATCCTCCCAATCATTTACCTGGTGCAGTCCCTGGACCAACTTATCAAA 347
                       ************************************************************

consensus_11870#0      TGATGTCAATACCTTCACCCTCATTGCCTGTGTTTCGACCTTCAATGGCTCCATGGAAGA 1620
consensus_11870#1      TGATGTCAATACCTTCACCCTCATTGCCTGTGTTTCGACCTTCAACGGCTCCATGGAAGA 407
                       ********************************************* **************

consensus_11870#0      AGCGACGAAAAACCAAGTCCCCCCCTTCAATTGCCCCTTCCCCATATTCTCTCCATTCCT 1680
consensus_11870#1      AGCGACGAAAAACCAAGTCCCCCCCTTCAATTGCCCCTTCCCCATATTCTCTCCATTCCT 467
                       ************************************************************

consensus_11870#0      GAAGTGAGACTTGGCTGGTGCCCTGGACTGTTTGCCTACAGAGTTACCAGTGCACAAGGT 1740
consensus_11870#1      GANNNGNNNNNTGGCTGGTGCCCTGGNCTGNNNGNCTACNNNNNNANNAGTGCNNNNNNN 527
                       **   *     *************** ***   * ****      *  *****       

consensus_11870#0      GGTTGTGGTTGCAAAGTTTGCTTCTTGAAATCTCCTGAAGCATGGAGTTGCAATCGTGAG 1800
consensus_11870#1      NGTTGTNGTTGNN----------------------------------------------- 540
                        ***** ****                                                 

consensus_11870#0      CGATCGTACTGCAAAGGCAGGTTTATGAATGCAATCATGAGCAATCATACTGCAAAAAGG 1860
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      CAGGTTTTGCTTATCGGTTACTTCTAACTGTATGGTGGTTTCTCGCACTTCAGAGTTGGA 1920
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      GTATAACTGTAGATATAGGTCTGTATTATGCTAATTTACCAGGGTTTTTATGTCACGAAG 1980
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      GTGACTGCCCTACGCCTCTACCAAATATCAAGTTTCTCACCGAAGGGTTGGGTGCTTATG 2040
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      GTAGAGGAGAATGTAATGACTTACCATAGTCGAATTGATGTTGTATCTTGCGATACGACT 2100
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      GTTCGTTTCCTGTAACATCATCATATACTGAGCATAATACGATACATTTACACCCGAAAA 2160
consensus_11870#1      ------------------------------------------------------------
                                                                                   

consensus_11870#0      TCTGCGACAAAAAAAAAAAAAAAA 2184
consensus_11870#1      ------------------------