These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11871#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2316 fasta sequence [CGTCTTGACACGCGCCTCCTCCTCGCCTCGCCTCGCCGCCGGTGGCCGCCACCGCCGCCGCCGACGCAGCCGTCGCCATCGCCGCGCCCACCCTGGCTTGGCGGCGAGCCGAGCAACAGGAAGGCGATAAGCACGCGAGGAGGAGCCCATAGCAAAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTTGATCACGCAAGACCGCGGCGTGCGAGGACCTTCCGGGTGCTGTGCTGTGCTGCGCGTGCGGCTGTTTGGGCGGCGGCGCGCGCCTTCGGATGAGATGCGCAGGGGCGGGGTGAAGGCGGCGGCGGCGGCCGAGAAGGCGCGGGAGGCGGCGCGGGCGAAGGTGTGGGCGGCGCGGGCGAGCACCACCGTGGTGCTCTGGCTGTGCTGCGCGCTGCTGCTCGCGACGTCGCGGGAGCTCGGGAGGTGGTCGGGCTGCCTCACCCAGCCGCTGATCGTCGTAGAGCGCCGGTTCGAGGCGGTTGCCGCCGCGGGCAGCGAGAGGGCGGCTGCATCAGCATCGGCAGCGGCAGCGGCGCGCGGCGAGAGGGCAGAATCATCAGCATCGGAAGCGGCGGTGGCGGCGCTCCCGCCGAAGAGAATCTACAAGAACAATGGCTATCTGATGGTCTCCTGCAACGGTGGGCTTAACCAGATGCGAGCAGCTATATGTGATATGGTGACGATTGCAAGATACCTGAACGTCACCCTTATCGTCCCAGAACTGGACAAAACTTCATTTTGGGCTGATCCTAGTGAGTTCAAGGATATATTTGATGTGGATTACTTCATATCATCATTGAGAGACGAGGTTCGGATACTGAAAGAGCTGCCTCCAAGGCTGAAAAGAAGAGTTGAACTGGGATATGTTCGCTCGATGCCACCTGTCAGTTGGTCTGATATATCTTATTACCAAAATCAGGTTTGGTGAATCTCTCGTTTTCGTTGATGTATTCATCATGAACTGAAAATCATGTGCAAAAATCAGGGGAGGATTGTAAGTGTTTATTTGCGGAAAACAGATTCTACCACTGATTAGGAAGTACAAGATCGTTCATCTGAACAAAACTGATGCTCGCCTTGCAAATAATGGCCTACCTATGGAGATTCAGAAATTGAGGTGCCGTGTCAATTTTGCTGCATTGAGATTTACCCCTGAGATAGAAGAGCTGGGTAGGCGTGTGGTTCGAATTCTTCGTCGTAATGGCCCTTTTCTGGTTCTTCACTTGCGATATGAAATGGACATGCTCGCGTTCTCTGGTTGCACACATGGTTGCAGCAACGAGGAGGCTGAGGAGCTCACAAGAATGAGATATGCTTACCCATGGTGGAAAGAGAAGGTGATTGACTCAAATGCAAAGAGGAACGACGGGCTCTGTCCATTAACACCGGAGGAGACTGCAATGGTATTAAAGGCACTAGACATTGATAGCAGTTATCAAATATACATTGCCGCTGGTGAAATATACGGTGGGCAAAGAAGAATGTCTGCCCTTACCTCAGCTTATCCCAATGTGGTGAGAAAAGAGACATTATTGCCTTCAGATCTCAGGTTTTTCCAGAACCATTCCTCCCAGATGGCAGCATTAGATTACATTGTATCCTTGGAGAGTGATATTTTTATCCCCACTTATGATGGTAATATGGCAAAAGTTGTTGAAGGTCATCGCAGATACTTGGGCTTCAAGAAGACTGTACTGCTAGATAGGAAGCTTATAGTTGAGCTCGTTGATCAGTACAAAAACGGCACAATGAGATGGAACCATTTCTCCTCCGCTGTGAAGGCGTCGCATAGCAGCCGCATGGGCGCGCCATCAAGGAGGCAGATGATTCCTGACAAACCTAAGGAAGAAGACTACTTCTATGCAAATCCTCATGAGTGTTTGCACCAA-CCAGAAGAGCTATCAGTTTTGTGACACCCCTCCCACTATACAGAATTACACATTCTTTCAGGATTATATTACAGATTGAATTGGCAATAAATGGAGGCCCAGTTGTATTGATGAATAAAAGCACACGAGATGAGAGAATTTGGCCTCCTTTTGCTAGGTGACTGTTACATAACATACACGTTGGCATAATTTTTTGCCGTTTTCT-CCCAAAAAT-AAG-CATGTAATTTTGTTTTGTAAATATAAGCATACATGCTCACAGGTGTTGAGTTGTTCGTACATATACATACGGATCAAGACTTGTCAAAAATTCTTCCACTGTACTTCTCTGTACTACATTTGGGCAGTTGGTGGTTCATGCATGTACTTTCCTGATTGTTTCTGAATTCTGAATTATCATTTT] [+] EMBL AK073003 [CGTCTTGACACGCGCCTCCTCCTCGCCTCGCCTCGCCGCCGGTGGCCGCCACCGCCGCCGCCGACGCAGCCGTCGCCATCGCCGCGCCCACCCTGGCTTGGCGGCGAGCCGAGCAACAGGAAGGCGATAAGCACGCGAGGAGGAGCCCATAGCAAAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTTGATCACGCAAGACCGCGGCGTGCGAGGACCTTCCGGGTGCTGTGCTGTGCTGCGCGTGCGGCTGTTTGGGCGGCGGCGCGCGCCTTCGGATGAGATGCGCAGGGGCGGGGTGAAGGCGGCGGCGGCGGCCGAGAAGGCGCGGGAGGCGGCGCGGGCGAAGGTGTGGGCGGCGCGGGCGAGCACCACCGTGGTGCTCTGGCTGTGCTGCGCGCTGCTGCTCGCGACGTCGCGGGAGCTCGGGAGGTGGTCGGGCTGCCTCACCCAGCCGCTGATCGTCGTAGAGCGCCGGTTCGAGGCGGTTGCCGCCGCGGGCAGCGAGAGGGCGGCTGCATCAGCATCGGCAGTGGCAGCGGCGCGCGGCGAGAGGGCAGAATCATCAGCATCGGAAGCGGCGGTGGCGGCGCTCCCGCCGAAGAGAATCTACAAGAACAGTGGCTATCTGATGGTCTCCTGCAACGGTGGGCTTAACCAGATGCGAGCAGCTATATGTGATATGGTGACGATTGCAAGATACCTGAACGTCACCCTTATCGTCCCAGAACTGGACAAAACTTCATTTTGGGCTGATCCTAGTGAGTTCAAGGATATATTTGATGTGGATTACTTCATATCATCATTGAGAGACGAGGTTCGGATACTGAAAGAGCTGCCTCCAAGGCTGAAAAGAAGAGTTGAACTGGGATATGTTCGCTCGATGCCACCTGTCAGTTGGTCTGATATATCTTATTACCAAAATCAGGTTTGGTGAATCTCTCGTTTTCGTTGATGTATTCATCATGAACTGAAAATCATGTGCAAAAATCAGGGGAGGATTGTAAGTGTTTATTTGCGGAAAACAGATTCTACCACTGATTAGGAAGTACAAGATCGTTCATCTGAACAAAACTGATGCTCGCCTTGCAAATAATGGCCTACCTATGGAGATTCAGAAATTGAGGTGCCGTGTCAATTTTGCTGCATTGAGATTTACCCCTGAGATAGAAGAGCTGGGTAGGCGTGTGGTTCGAATTCTTCGTCGTAATGGCCCTTTTCTGGTTCTTCACTTGCGATATGAAATGGACATGCTCGCGTTCTCTGGTTGCACACATGGTTGCAGCAACGAGGAGGCTGAGGAGCTCACAAGAATGAGGTATGCTTACCCATGGTGGAAAGAGAAGGTGATTGACTCAAATGCAAAGAGGAACGACGGGCTCTGTCCATTAACACCGGAGGAGACTGCAATGGTATTAAAGGCACTAGACATTGATAGCAGTTATCAAATATACATTGCCGCTGGTGAAATATACGGTGGGCAAAGAAGAATGTCTGCCCTTACCTCAGCTTATCCCAATGTGGTGAGAAAAGAGACATTATTGCCTTCAGATCTCAGGTTTTTCCAGAACCATTCCTCCCAGATGGCAGCATTAGATTACATTGTATCCTTGGAGAGTGATATTTTTATCCCCACTTATGATGGTAATATGGCAAAAGTTGTTGAAGGTCATCGCAGATACTTGGGCTTCAAGAAGACTGTACTGCTAGATAGGAAGCTTATAGTTGAGCTCGTTGATCAGTACAAAAACGGCACAATGAGATGGAACCATTTCTCCTCCGCTGTGAAGGCGTCGCATAGCAGCCGCATGGGCGCGCCATCAAGGAGGCAGATGATTCCTGACAAACCTAAGGAAGAAGACTACTTCTATGCAAATCCTCATGAGTGTTTGCACCAA CCAGAAGAGCTATCAGTTTTGTGACACCCCTCCCACTATACAGAATTACACATTCTTTCAGGATTATATTACAGATTGAATTGGCAATAAATGGAGGCCCAGTTGTATTGATGAATAAAAGCACACGAGATGAGAGAATTTGGCCTCCTTTTGCTAGGTGACTGTTACATAACATACACGTTGGCATAATTTTTTGCCGTTTTCT CCCAAAAAT AAG CATGTAATTTTGTTTTGTAAATATAAGCATACATGCTCACAGGTGTTGAGTTGTTCGTACATATACATACGGATCAAGACTTGTCAAAAATTCTTCCACTGTACTTCTCTGTACTACATTTGGGCAGTTGGTGGTTCATGCATGTACTTTCCTGATTGTTTCTGAATTCTGAATTATCATTTT] [+] EMBL CB636273 [ AGAGAGCTTTGATCACGCAAGACCGCGGCGTGCGAGGACCTTCCGGGTGCTGTGCTGTGCTGCGCGTGCGGCTGTTTGGGCGGCGGCGCGCGCCTTCGGATGAGATGCGCAGGGGCGGGGTGAAGGCGGCGGCGGCGGCCGAGAAGGCGCGGGAGGCGGCGCGGGCGAAGGTGTGGGCGGCGCGGGCGAGCACCACCGTGGTGCTCTGGCTGTGCTGCGCGCTGCTGCTCGCGACGTCGCGGGAGCTCGGGAGGTGGTCGGGCTGCCTCACCCAGCCGCTGATCGTCGTAGAGCGCCGGTTCGAGGCGGTTGCCGCCGCGGGCAGCGAGAGGGCGGCTGCATCAGCATCGGCAGCGGCAGCGGCGCGCGGCGAGAGGGCAGAATCATCAGCATCGGAAGCGGCGGTGGCGGCGCTCCCGCCGAAGAGAATCTACAAGAACAATGGCTATCTGATGGTCTCCTGCAACGGTGGGCTTAACCAGATGCGAGCAGCTATATGTGATATGGTGACGATTGCAAGATACCTGAACGTCA ] [+] EMBL CK085203 [ GGAGGTGGTCGGGCTGCCTCACCCAGCCGCTGATCGTCGTAGAGCGCCGGTTCGAGGCGGTTGCCGCCGCGGGCAGCGAGAGGGCGGCTGCATCAGCATCGGCAGCGGCAGCGGCGCGCGGCGAGAGGGCAGAATCATCAGCATCGGAAGCGGCGGTGGCGGCGCTCCCGCCGAAGAGAATCTACAAGAACAATGGCTATCTGATGGTCTCCTGCAACGGTGGGCTTAACCAGATGCGAGCAGCTATATGTGATATGGTGACGATTGCAAGATACCTGAACGTCACCCTTATCGTCCCAGAACTGGACAAAACTTCATTTTGGGCTGATCCTAGTGAGTTCAAGGATATATTTGATGTGGATTACTTCATATCATCATTGAGAGACGAGGTTCGGATACTGAAAGAGCTGCCTCCAAGGCTGAAAAGAAGAGTTGAACTGGGATATGTTCGCTCGATGCCACCTGTCAGTTGGTCTGATATATCTTATTACCAAAATCAGGTTTGGTGAATCTCTCGTTTTCGTTGATGTATTCATCATGAACTGAAAATCATGTGCAAAAATCAGGGGAGGATTGT ] [+] EMBL CB642561 [ GCGCGCGGCGAGAGGGCAGAATCATCAGCATCGGAAGCGGCGGTGGCGGCGCTCCCGCCGAAGAGAATCTACAAGAACAATGGCTATCTGATGGTCTCCTGCAACGGTGGGCTTAACCAGATGCGAGCAGCTATATGTGATATGGTGACGATTGCAAGATACCTGAACGTCACCCTTATCGTCCCAGAACTGGACAAAACTTCATTTTGGGCTGATCCTAGTGAGTTCAAGGATATATTTGATGTGGATTACTTCATATCATCATTGAGAGACGAGGTTCGGATACTGAAAGAGCTGCCTCCAAGGCTGAAAAGAAGAGTTGAACTGGGATATGTTCGCTCGATGCCACCTGTCAGTTGGTCTGATATATCTTATTACCAAAATCAGGTTTGGTGAATCTCTCGTTTTCGTTGATGTATTCATCATGAACTGAAAATCATGTGCAAAAATCAGGGGAGGATTGTAAGTGTTTATTTGCGGAAAACAGATTCTACCACTGATTAGGAAGTACAAGATCGTTCATCTGAACAAAACTGATGCTCGCCTTGCAAATAATGGCCTACCTATGGAGATTCAGAAATTGAGGTGCCGTGTCAATTTTGCTGCATTGAGATTTACCCCTGAGATAGAAGAGCTGGGTAGGCGTGTGGTTCGAATTCTTCGTCGTAATGGCCCTTTTCTGGTTCTTCACTTGCGATATGAAATGGACATGCTCGCGTTCTCTGGTTGCACACATGGTTGCAGCAACGAGGAGGCTGANGAGCTCACAAGAATGAGATA ] [+] EMBL CK085093 [ CGTCCCAGAACTGGACAAAACTTCATTTTGGGCTGATCCTAGTGAGTTCAAGGATATATTTGATGTGGATTACTTCATATCATCATGGAGAGACGAGGTTCGGATACTGAAAGAGCTGCCTCCAAGGCTGAAAA ] [+] EMBL CA766536 [ gacnAGA CAGGG GGGCGTGTGGTTCGAATTCTTCGTCGTAATGGCCCTTTTCTGGTTCTCCACTTGCGATATGAAATGGACATGCTCGCGTTCTCTGGTTGCACACATGGTTGCAGCAACGAGGAGGCTGAGGAGCTCACAAGAATGAGATATGCTTACCCATGGTGGAAAGAGAAGGTGATTGACTCAAATGCAAAGAGGAACGACGGGCTCTGTCCATTAACACCGGAGGAGACTGCAATGGTATTAAAGGCACTAGACATTGATAGCAGTTATCAAATATACATTGCCGCTGGTGAAATATACGGTGGGCAAAGAAGAATGGCTGCCCTTACCTCAGCTTATCCCAATGTGGTGAGAAAAGAGACATTATTGCCTTCAGATCTCAGGTTTTTCCAGAACCATTCCTCCCAGATGGCAGCATTAGATTACATTGTATCCTTGGAGAGTGATATTTTTATCCCCACTTATGATGGTAATATGGCAAAAGTTGTTGAAGGTCATCGCAGATACTTGGGCTTCAAGAAGACTGTACTGCTAGATAGGAAGCTTATAGTTGAGCTCGTTGATCAGTACAAAAACGGCACAATGAGCTGGNACCATTTCTCCTCCGCTGTGAANGCGTCGCATAGCAGCCGCATGGGCGCGCCATCAAGGAGGCAGATGATTNCTGACAAACCTAANGAAGAAGACTACTTCTATGCAAATCCTCATGAGTGGTTGCACCAANCCAGAANAGCTNTCAGTTTTGNGACANCCCTTCCACTATACAAAAATACACA ] [-] EMBL CB642562 [ GTTATCAAATATACATTGCCGCTGGTGAAATATACGGTGGGCAAAGAAGAATGTCTGCCCTTACCTCAGCTTATCCCAATGTGGTGAGAAAAGAGACATTATTGCCTTCAGATCTCAGGTTTTTCCAGAACCATTCCTCCCAGATGGCAGCATTAGATTACATTGTATCCTTGGAGAGTGATATTTTTATCCCCACTTATGATGGTAATATGGCAAAAGTTGTTGAAGGTCATCGCAGATACTTGGGCTTCAAGAAGACTGTACTGCTAGATAGGAAGCTTATAGTTGAGCTCGTTGATCAGTACAAAAACGGCACAATGAGATGGAACCATTTCTCCTCCGCTGTGAAGGCGTCGCATAGCAGCCGCATGGGCGCGCCATCAAGGAGGCAGATGATTCCTGACAAACCTAAGGAAGAAGACTACTTCTATGCAAATCCTCATGAGTGTTTGCACCAA CCAGAAGAGCTATCAGTTTTGTGACACCCCTCCCACTATACAGAATTACACATTCTTTCAGGATTATATTACAGATTGAATTGGCAATAAATGGAGGCCCAGTTGTATTGATGAATAAAAGCACACGAGATGAGAGAATTTGGCCTCCTTTTGCTAGGTGACTGTTACATAACATACACGTTGGCATAATTTTTTGCCGTTTTCT CCCAAAAAT AAG CATGTAATTTTGTTTTGTAAATATAAGCATACATGCTCACAGGTGTTGAGTTGTTCGTACATATACATACGGATCAAGACTTGTCAAAAATTCTTCCACTGTA ] [-] EMBL CB636274 [ TCCTCCGCTGTGAAGGCGTCGCATAGCAGCCGCATGGGCGCGCCATCAAGGAGGCAGATGATTCCTGACAAACTTAAGGAAGAAGACTACTTCTATGCAAATCCTCATGAGTGTTTGCACCAA CCAGAAGAGCTATCAGTTTTGTGACACCCCTCCCACTATACAGAATTACACATTCTTTCAGGATTATATTACAGATTGAATTGGCAATAAATGGAGGCCCAGTTGTATTGATGAATAAAAGCACACGAGATGAGAGAATTTGGCCTCCTTTTGCTAGGTGACTGTTACATAACATACACGTTGGCATAATTTTTTGCCGTTTTCTCCCCAAAAATAAAGCCATGTAATTTTGTTTTGTAAATATAAGCATACATGCTCACAGGTGTTGAGTTGTT ] [+] EMBL BI804852 [ CTGTGAAGGCGTCGCATA CA CCGCATGGGCGCGCCATCAAGGA GCAGATGATTCCTGAC AACCTAAGGAAGAAGACTACTTCTATGCAAATCCTCATGAGTGTTTGCACCAA CCAGAAGAGCTATCAGTTTTGTGACACCCCTCCCACTATACAGAATTACACATTCTTTCAGGATTATATTACAGATTGAATTGGCAATAAATGGAGGCCCAGTTGTATTGATGAATAAAAGCACACGAGATGAGAGAATTTGGCCTCCTTTTGCTAGGTGACTGTTACATAACATACACGTTGGCATAATTTTTTGCCGTTTTCT CCCAAAAAT AAG CATGTAATTTTGTTTTGTAAATATAAGCATACATGCTCACAGGTGTTGAGTTGTTCGTACATATACATACGGATCAAGACTTGTC AAAATTCTTCCAaaaaaaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||