cluster # 11872

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Oryza sativa
cluster # 11872 cluster # 11872 Sequences # 9 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11872#0 length = 1224 sequences # 3
consensus_11872#1 length = 839 sequences # 1

consensus_11872#2 length = 810 sequences # 2
consensus_11872#3 length = 783 sequences # 1
consensus_11872#4 length = 714 sequences # 2

consensusID : consensus_11872#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1224
fasta sequence

                              [CCCTTTATTTTTTTTTTTTTTTTTTTTTTTTTAGCAACCTTTTCCCAAGCACAACATATGCTTCGGGGCCTGGGCTAGTGTAATATTGCATCATTATCATTTCCCTTTCTTTTATGGGAAATCTCACTTTGCTCTCGATACATCCAAAAAAATTGGGGCACCATGCATGTTTTACAAATCCATGCAAAAAAATGCTATTTTTTTTTCGAAAAAAATACGGGCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGGGGGTATCTGTCCTTGAACAACGGGGTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTGAAGTTGACGAATGGTGCCCACAACATCATCCTGCAAAATGGTAAAAATGCCCACAGACAAGGAATTGGGTTCAATTGATACTATGACTAGGCCATTCACAGCAAGAAATATATGTTGTTGAAAATGGGAATTTTGAGTTTCACGGTTATTTGGTTCACACAAACAAAATTTGGCAACGGCATGCGCATCGATTCCATTGATATGATGATCTTCGGCAAAGCAATACTGCAGTCCTTTTTAAAAAATTTATGGTCCTTAGAATGTACGGAGAGATGCCAAATTTTATAACAGAAAAATTAATTCTACACCGCAGTAAAATTTAGTAACTCTGGGTATCTCCTTAAGACAGCAAAATATGTATATATATTTAAATTTTTGTCCAGA-GGGATAGAGCAGATCACTAGATGATTATCTTTGCTGCATTAATGCTCAACAGAAAATCAGATTGAAAGGTAATTACAATACTATATATTCACGATTCGAAGATGCCGCATTTTGTTCTTTAATTTGTTCTTTGTAAGCATACGTGGTAGCAAGAGGCAACTCACCCGGGGAAGAAGAGGTAGGTGAACATGAACTGCAGGTACGTCTCGACGAACTTGCGCTTGAACCACCTCAGCCTCATCCAGTTCATGATAATCGGCGGGAAGACGAACAGGTAAACGAAGGCGATGGCGGCCACCGTCGGCAGGATCCCCAGGATGTCGAGGTCCTCCTCGCCCGTCACCGCCAGCGCCGCCGGGGCCTCAACCGCTGCCCAGATGGCACCGCACTGCAGCGCCGCGGCCAGCTTCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGGCGGGCGGCGGTGCAGGAGGAGGCGTGTCATGGAGGAGGCAGAGGAGCCTCGTCGTCCGC]

[+] EMBL CB653812             [CCCTTTATTTTTTTTTTTTTTTTTTTTTTTTTAGCAACCTTTTCCCAAGCACAACATATGCTTCGGGGCCTGGGCTAGTGTAATATTGCATCATTATCATTTCCCTTTCTTTTATGGGAAATCTCACTTTGCTCTCGATACATCCAAAAAAATTGGGGCACCATGCATGTTTTACAAATCCATGCAAAAAAATGCTATTTTTTTTTCGAAAAAAATACGGGCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGGGGGTATCTGTCCTTGAACAACGGGGTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTGAAGTTGACGAATGGTGCCCACAACATCATCCTGCAAAATGGTAAAAATGCCCACAGACAAGGAATTGGGTTCAATTGATACTATGACTAGGCCATTCACAGCAAGAAATATATGTTGTTGAAAATGGGAATTTTGAGTTTCACGGTTATTTGGTTCACACAAACAAAATTTGGCAACGGCATGCGCATCGATTCCATTGATATGATGATCTTCGGCAAAGCAATACTGCAGTCCTTTTTAAAAAATTTATGGTCCTTAGAATGTACGGAGAGATGCCAAATTTTATAACAGAAAAATTAATTCTACACCGCAGTAAAATTTAGTAACTCTGGGTATCTCCTTAAGACAGCAAAATATGTATATATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB645979             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GATTCCATTGATATGATGATCTTCGGCAAAGCAATACTGCAGTCCTTTTTAGAAAATTTATGGTCCTTAGAATGTACGGAGAGATGCCAAATTTTATAACAGAAAAATTAATTCTACACCGCAGTAAAATTTAGTAACTCTGGGTATCTCCTTAAGACAGCAAAATATGTATATATATTTAAATTTTTGTCCAGA GGGATAGAGCAGATCACTAGATGATTATCTTTGCTGCATTAATGCTCAACAGAAAATCAGATTGAAAGGTAATTACAATACTATATATTCACGATTCGAAGATGCCGCATTTTGTTCTTTAATTTGTTCTTTGTAAGCATACGTGGTAGCAAGAGGCAACTCACCCGGGGAAGAAGAGGTAGGTGAACATGAACTGCAGGTACGTCTCGACGAACTTGCGCTTGAACCACCTCAGCCTCATCCAGTTCATGATAATCGGCGGGAAGACGAACAGGTAAACGAAGGCGATGGCGGCCACCGTCGGCAGGATCCCCAGGATGTCGAGGTCCTCCTCGCCCGTCACCGCCAGCGCCGCCGGGGCCTCAACCGCTGCCCAGATGGCACCGCACTGCAGCGCCGCGGCCAGCTTCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGGCGGGCGGCGGTGCAGGAGGAGGCGTGTCATGGAGGAGGCAGAGGAGCCTCGTCGTCCGC]
[-] EMBL CB653811             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTATATATATTTAAATTTTTGTCCAGAGGGGATAGAGCAGATCACTAGATGATTATCTTTGCTGCATTAATGCTCAACAGAAAATCAGATTGAAAGGTAATTACAATACTATATATTCACGATTCGAAGATGCCGCATTTTGTTCTTTAATTTGTTCTTTGTAAGCATACGTGGTAGCAAGAGGCAACTCACCCGGGGAAGAAGAGGTAGGTGAACATGAACTGCAGGTACGTCTCGACGAACTTGCGCTTGAACCACCTCAGCCTCATCCAGTTCATGATAATCGGCGGGAAGACGAACAGGTAAACGAAGGCGATGGCGGCCACCGTCGGCAGGATCCCCAGGATGTCGAGGTCCTCCTCGCCCGTCACCGCCAGCGCCGCCGGGGCCTCAACCGCTGCCCAGATGGCACCGCACTGCAGCGCCGCGGCCAGCTTCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGGCGGGCGGCGGTGCAGGAGGAGGCGTGTCATGGAGGAGGCAGAGGAGCCTCGTCGTCCGC]




>consensus_11872#0
CCCTTTATTTTTTTTTTTTTTTTTTTTTTTTTAGCAACCTTTTCCCAAGCACAACATATG
CTTCGGGGCCTGGGCTAGTGTAATATTGCATCATTATCATTTCCCTTTCTTTTATGGGAA
ATCTCACTTTGCTCTCGATACATCCAAAAAAATTGGGGCACCATGCATGTTTTACAAATC
CATGCAAAAAAATGCTATTTTTTTTTCGAAAAAAATACGGGCTAGTACTTCTGATCACTT
GTAGGTTTCTATAGGGGGGTATCTGTCCTTGAACAACGGGGTGCCTTCCTTTGGCTTGGA
CCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTGAAGTTGACGAATGGTGCCCA
CAACATCATCCTGCAAAATGGTAAAAATGCCCACAGACAAGGAATTGGGTTCAATTGATA
CTATGACTAGGCCATTCACAGCAAGAAATATATGTTGTTGAAAATGGGAATTTTGAGTTT
CACGGTTATTTGGTTCACACAAACAAAATTTGGCAACGGCATGCGCATCGATTCCATTGA
TATGATGATCTTCGGCAAAGCAATACTGCAGTCCTTTTTAAAAAATTTATGGTCCTTAGA
ATGTACGGAGAGATGCCAAATTTTATAACAGAAAAATTAATTCTACACCGCAGTAAAATT
TAGTAACTCTGGGTATCTCCTTAAGACAGCAAAATATGTATATATATTTAAATTTTTGTC
CAGAGGGATAGAGCAGATCACTAGATGATTATCTTTGCTGCATTAATGCTCAACAGAAAA
TCAGATTGAAAGGTAATTACAATACTATATATTCACGATTCGAAGATGCCGCATTTTGTT
CTTTAATTTGTTCTTTGTAAGCATACGTGGTAGCAAGAGGCAACTCACCCGGGGAAGAAG
AGGTAGGTGAACATGAACTGCAGGTACGTCTCGACGAACTTGCGCTTGAACCACCTCAGC
CTCATCCAGTTCATGATAATCGGCGGGAAGACGAACAGGTAAACGAAGGCGATGGCGGCC
ACCGTCGGCAGGATCCCCAGGATGTCGAGGTCCTCCTCGCCCGTCACCGCCAGCGCCGCC
GGGGCCTCAACCGCTGCCCAGATGGCACCGCACTGCAGCGCCGCGGCCAGCTTCCGCAGC
GGCGGCGAGCTGATCTCGTCAGCGGCGGGCGGCGGTGCAGGAGGAGGCGTGTCATGGAGG
AGGCAGAGGAGCCTCGTCGTCCGC

consensusID : consensus_11872#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 839
fasta sequence

                              [TGCCTTAACTGTGAAACAGAAAGACAGGCTGCTACTCCAGTACTAGATTTTGCCAACACCTGCAACTTATCTAGCAACCTTTTCCCAAGCACAACATATGCTTCGGTGCCTGGGCTAGTGTAATATTGCATCATTATCATTTCCCTTTCTTTTATGTGAGATCTCACTTTGCTCTCGATACATCCAAGAAGATTGTGGCACCATGCATGTTTTACAAATCCATGCAAAGAAATGCTATTTTTTTCGAAAAGAATACGGTCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGTGGGTATCTGTCCTTGAACAACGGTGTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTGAAGTTGACGAATGGTGCCCACAACATCATCCCGGGGAAGAAGAGGTAGGTGAACATGAACTGCAGGTACGTCTCGACGAACTTGCGCTTGAACCACCTCAGCCTCATCCAGTTCATGATAATCGGCTGCAGAAACAAAGGAAAAAAAACCATCACAAACCTGTACACCCGATCTCTGAATTAGCCTCGCAAGAAACCAAGAATGGCGGCCCGGATCTCACCGGGAAGACGAACAGGTAAACGAAGGCGATGGCGGCCACCGTCGGCAGGATCCCCAGGATGTCGAGGTCCTCCTCGCCCGTCACCGCCAGCGCCGCCGGGGCCTCAACCGCTGCCCAGATGGCACCGCACTGCAGCGCCGCGGCCAGCTTCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGGCGGGCGGCGGTGCAGGAGGAGGCGTGTCATGGAGGAGGCAGAGGAGCCTCGTCGTCCGC]

[-] EMBL AK061434             [TGCCTTAACTGTGAAACAGAAAGACAGGCTGCTACTCCAGTACTAGATTTTGCCAACACCTGCAACTTATCTAGCAACCTTTTCCCAAGCACAACATATGCTTCGGTGCCTGGGCTAGTGTAATATTGCATCATTATCATTTCCCTTTCTTTTATGTGAGATCTCACTTTGCTCTCGATACATCCAAGAAGATTGTGGCACCATGCATGTTTTACAAATCCATGCAAAGAAATGCTATTTTTTTCGAAAAGAATACGGTCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGTGGGTATCTGTCCTTGAACAACGGTGTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTGAAGTTGACGAATGGTGCCCACAACATCATCCCGGGGAAGAAGAGGTAGGTGAACATGAACTGCAGGTACGTCTCGACGAACTTGCGCTTGAACCACCTCAGCCTCATCCAGTTCATGATAATCGGCTGCAGAAACAAAGGAAAAAAAACCATCACAAACCTGTACACCCGATCTCTGAATTAGCCTCGCAAGAAACCAAGAATGGCGGCCCGGATCTCACCGGGAAGACGAACAGGTAAACGAAGGCGATGGCGGCCACCGTCGGCAGGATCCCCAGGATGTCGAGGTCCTCCTCGCCCGTCACCGCCAGCGCCGCCGGGGCCTCAACCGCTGCCCAGATGGCACCGCACTGCAGCGCCGCGGCCAGCTTCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGGCGGGCGGCGGTGCAGGAGGAGGCGTGTCATGGAGGAGGCAGAGGAGCCTCGTCGTCCGC]




>consensus_11872#1
TGCCTTAACTGTGAAACAGAAAGACAGGCTGCTACTCCAGTACTAGATTTTGCCAACACC
TGCAACTTATCTAGCAACCTTTTCCCAAGCACAACATATGCTTCGGTGCCTGGGCTAGTG
TAATATTGCATCATTATCATTTCCCTTTCTTTTATGTGAGATCTCACTTTGCTCTCGATA
CATCCAAGAAGATTGTGGCACCATGCATGTTTTACAAATCCATGCAAAGAAATGCTATTT
TTTTCGAAAAGAATACGGTCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGTGGGTAT
CTGTCCTTGAACAACGGTGTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGA
TCCCTTGGGAACTTCCTGAAGTTGACGAATGGTGCCCACAACATCATCCCGGGGAAGAAG
AGGTAGGTGAACATGAACTGCAGGTACGTCTCGACGAACTTGCGCTTGAACCACCTCAGC
CTCATCCAGTTCATGATAATCGGCTGCAGAAACAAAGGAAAAAAAACCATCACAAACCTG
TACACCCGATCTCTGAATTAGCCTCGCAAGAAACCAAGAATGGCGGCCCGGATCTCACCG
GGAAGACGAACAGGTAAACGAAGGCGATGGCGGCCACCGTCGGCAGGATCCCCAGGATGT
CGAGGTCCTCCTCGCCCGTCACCGCCAGCGCCGCCGGGGCCTCAACCGCTGCCCAGATGG
CACCGCACTGCAGCGCCGCGGCCAGCTTCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGG
CGGGCGGCGGTGCAGGAGGAGGCGTGTCATGGAGGAGGCAGAGGAGCCTCGTCGTCCGC

consensusID : consensus_11872#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 810
fasta sequence

                              [TCTTTTAAGTTTTAACTGTGAAACAGAAAGACAGGCTGCTACTCCAGTACTAGATTTTGCCAACACCTGCAACTTATCTA-GCAACCTTTTCCCAAGCACAACATATGCTTCGGTGCCTGGGCTAGTGTAATATTGCATCATTATCATTTCCCTTTCTTTTATGTGAGATCTCACTTTGCTCTCGATACATCCAAGAAGATTGTGGCACCATGCATGTTTTACAAATCCATGCAA-AGAAATGCTATTTTGTTTCGAAAAGAATACGGTCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGTGGGTATCTGTCCTTGAACAACGGTGTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTGAAGTTGACGAATGGTGCCCACAACATCATCCCGGGGAAGAAGAGGTACGTGAACATGAACTGCAGGTACGTCTCGACGAACTTGCGCTTGAACCACCTCAGCCTCATCCAGTTCATGATAATCGGCGGGAAGACGAACAGGTAAACGAAGGCGATGGCGGCCACCGTCGGCAGGATCCCCAGGATGTCGAGGTCCTCCTCGCCCGTCACCGCCAGCGCCGCCGGGGCCTCAACCGCTGCCCAGATGGCGCCGCACTGCAGCGCCGCGGCCAGCTTCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGGCGGGCGGCGGCGCAGGAGGAGGCTGCCGAAACGGATGGCAAGAAACAACACGGCAAGTGATTAATGGCGCTGATCGATCGATCGATCGATCGGGGAGATTCGAGAGAGACGGATGTT]

[+] EMBL CB618323             [TCTTTTAAGTTTTAACTGTGAAACAGAAAGACAGGCTGCTACTCCAGTACTAGATTTTGCCAACACCTGCAACTTATCTA GCAACCTTTTCCCAAGCACAACATATGCTTCGGTGCCTGGGCTAGTGTAATATTGCATCATTATCATTTCCCTTTCTTTTATGTGAGATCTCACTTTGCTCTCGATACATCCAAGAAGATTGTGGCACCATGCATGTTTTACAAATCCATGCAA AGAAATGCTATTTTGTTTCGAAAAGAATACGGTCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGTGGGTATCTGTCCTTGAACAACGGTGTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTGAAGTTGACGAATGGTGCCCACAACATCATCCCGGGGAAGAAGAGGTACGTGAACATGAACTGCAGGTACGTCTCGACGAACTTGCGCTTGAACCACCTCAGCCTCATCCAGTTCATGATAATCGGCGGGAAGACGAACAGGTAAACGAAGGCGATGGCGGCCACCGTCGGCAGGATCCCCAGGATGTCGAGGTCCTCCTCGCCCGTCACCGCCAGCGCCGCCGGGGCCTCAACCGCTGCCCAGATGGCGCCGCACTGCAGCGCCGCGGCCAGCTTCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGGCGGGCGGCGGCGCAGGAGGAGGCTGCCGAAACGGATGGCAAGAAACAACACGGCAAGTGATTAATGGCGCTGATCGATCGATCGATCGATCGGGGAGATTCGAGAGAGACGGATGTT]
[-] EMBL BM419184             [                                                                   ttttttTTATCTAGGCAACCTTNTCCCAAGCACAACATATGCTTCGGTGCCTGGGCTAGTGTAATATTGCATCATTATCATTTCCCTTTCTTTTATGTGAGATCTCACTTTGCTCTCGATACATCCAAGAAGATTGTGGCACCATGCATGTTTTACAAATCCATGCAAGAGAAATGCTATTTTGTTTCGAAAAGAATACGGTCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGTGGGTATCTGTCCTTGAACAACGGTGTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTGAAGTTGACGAATGGTGCCCACAA ATCATCCCGGGGAAGAAGAGGTACGTGAACATGAACTGCAGGTACGTCTCGACGAACTTGCGCTTGAACCACCTCAGCCTCATCCAGTTCATGATAATCGGCGGGAAGACGAACAGGTAAACGAAGGCGATGGCGG CACCGTCGGCAGGATCCCCAGGATGTCGAGGTCCTCCTCGNCCGTCACCGCCAGCGCCG CGGGGCCTCAAACGCTGGCCAGATGGCGCCGCACTGga                                                                                                                                                                     ]




>consensus_11872#2
TCTTTTAAGTTTTAACTGTGAAACAGAAAGACAGGCTGCTACTCCAGTACTAGATTTTGC
CAACACCTGCAACTTATCTAGCAACCTTTTCCCAAGCACAACATATGCTTCGGTGCCTGG
GCTAGTGTAATATTGCATCATTATCATTTCCCTTTCTTTTATGTGAGATCTCACTTTGCT
CTCGATACATCCAAGAAGATTGTGGCACCATGCATGTTTTACAAATCCATGCAAAGAAAT
GCTATTTTGTTTCGAAAAGAATACGGTCTAGTACTTCTGATCACTTGTAGGTTTCTATAG
GTGGGTATCTGTCCTTGAACAACGGTGTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCA
TGGTTGGATCCCTTGGGAACTTCCTGAAGTTGACGAATGGTGCCCACAACATCATCCCGG
GGAAGAAGAGGTACGTGAACATGAACTGCAGGTACGTCTCGACGAACTTGCGCTTGAACC
ACCTCAGCCTCATCCAGTTCATGATAATCGGCGGGAAGACGAACAGGTAAACGAAGGCGA
TGGCGGCCACCGTCGGCAGGATCCCCAGGATGTCGAGGTCCTCCTCGCCCGTCACCGCCA
GCGCCGCCGGGGCCTCAACCGCTGCCCAGATGGCGCCGCACTGCAGCGCCGCGGCCAGCT
TCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGGCGGGCGGCGGCGCAGGAGGAGGCTGCC
GAAACGGATGGCAAGAAACAACACGGCAAGTGATTAATGGCGCTGATCGATCGATCGATC
GATCGGGGAGATTCGAGAGAGACGGATGTT

consensusID : consensus_11872#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 783
fasta sequence

                              [GTAGGAAAGTATTTTTTGAAGATGATCATGAGAAAACGGTGCCTTAACTGTGAAACAGAAAGACAGGCTGCTACTCCAGTACTAGATTTTGCCAACACCTGCAACTTATCTAGCAACCTTTTCCCAAGCACAACATATGCTTCGGTGCCTGGGCTAGTGTAATATTGCATCATTATCATTTCCCTTTCTTTTATGTGAGATCTCACTTTGCTCTCGATACATCCAAGAAGATTGTGGCACCATGCATGTTTTACAAATCCATGCAAAGAAATGCTATTTTTTTTCGAAAAGAATACGGTCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGTGGGTATCTGTCCTTGAACAACGGTGTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTGAAGTTGACGAATGGTGCCCACAACATCATCCTGCAAAATGGTAGAGATGCACACAGACAAGGAATTGGGTTCAATTGATACTATGACTAGGCCATTCACAGCAAGAGATATATGTTGTTGAAGATGGGAATTTTGAGTTTCACGGTTATTTGGTTCACACAAACAAAATTTGGCAACGGCATGCGCATCGATTCCATTGATATGATGATCTTCGGCAAAGCAATACTGCAGTCCTTTTTAGAAAATTTATGGTCCTTAGAATGTACGGAGAGATGCCAAATTTTATAACAGAAAAATTAATTCTACACCGCAGTAAAATTTAGTAACTCTGGGTATCTCCTTAAGACAGCAAAATATGTATATAT]

[+] EMBL CB645980             [GTAGGAAAGTATTTTTTGAAGATGATCATGAGAAAACGGTGCCTTAACTGTGAAACAGAAAGACAGGCTGCTACTCCAGTACTAGATTTTGCCAACACCTGCAACTTATCTAGCAACCTTTTCCCAAGCACAACATATGCTTCGGTGCCTGGGCTAGTGTAATATTGCATCATTATCATTTCCCTTTCTTTTATGTGAGATCTCACTTTGCTCTCGATACATCCAAGAAGATTGTGGCACCATGCATGTTTTACAAATCCATGCAAAGAAATGCTATTTTTTTTCGAAAAGAATACGGTCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGTGGGTATCTGTCCTTGAACAACGGTGTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTGAAGTTGACGAATGGTGCCCACAACATCATCCTGCAAAATGGTAGAGATGCACACAGACAAGGAATTGGGTTCAATTGATACTATGACTAGGCCATTCACAGCAAGAGATATATGTTGTTGAAGATGGGAATTTTGAGTTTCACGGTTATTTGGTTCACACAAACAAAATTTGGCAACGGCATGCGCATCGATTCCATTGATATGATGATCTTCGGCAAAGCAATACTGCAGTCCTTTTTAGAAAATTTATGGTCCTTAGAATGTACGGAGAGATGCCAAATTTTATAACAGAAAAATTAATTCTACACCGCAGTAAAATTTAGTAACTCTGGGTATCTCCTTAAGACAGCAAAATATGTATATAT]




>consensus_11872#3
GTAGGAAAGTATTTTTTGAAGATGATCATGAGAAAACGGTGCCTTAACTGTGAAACAGAA
AGACAGGCTGCTACTCCAGTACTAGATTTTGCCAACACCTGCAACTTATCTAGCAACCTT
TTCCCAAGCACAACATATGCTTCGGTGCCTGGGCTAGTGTAATATTGCATCATTATCATT
TCCCTTTCTTTTATGTGAGATCTCACTTTGCTCTCGATACATCCAAGAAGATTGTGGCAC
CATGCATGTTTTACAAATCCATGCAAAGAAATGCTATTTTTTTTCGAAAAGAATACGGTC
TAGTACTTCTGATCACTTGTAGGTTTCTATAGGTGGGTATCTGTCCTTGAACAACGGTGT
GCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTGAA
GTTGACGAATGGTGCCCACAACATCATCCTGCAAAATGGTAGAGATGCACACAGACAAGG
AATTGGGTTCAATTGATACTATGACTAGGCCATTCACAGCAAGAGATATATGTTGTTGAA
GATGGGAATTTTGAGTTTCACGGTTATTTGGTTCACACAAACAAAATTTGGCAACGGCAT
GCGCATCGATTCCATTGATATGATGATCTTCGGCAAAGCAATACTGCAGTCCTTTTTAGA
AAATTTATGGTCCTTAGAATGTACGGAGAGATGCCAAATTTTATAACAGAAAAATTAATT
CTACACCGCAGTAAAATTTAGTAACTCTGGGTATCTCCTTAAGACAGCAAAATATGTATA
TAT

consensusID : consensus_11872#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 714
fasta sequence

                              [CCTTTTTTTTTTAGATTTTGCCAACACCTGCAACTTATCTAGCAACCCTTTTCCCAAGCACAACATATGCTTCGGTGCCTGGGCTAGTGTAATATTGCATCATTATCATTTCCCTTTCTTTTATGTGAGATCTCACTTTGCTCTCGATACATCCAAGAAGATTGTGGCACCATGCATGTTTTACAAATCCATGCAAAGAAATGCTATTTTTTTTCGAAAAGAATACGGTCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGTGGGTATCTGTCCTTGAACAACGGTGTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTGAAGTTGACGAATGGTGCCCACAACATCATCCCGGGGAAGAAGAGGTAGGTGAACATGAACTGCAGGTACGTCTCGACGAACTTGCGCTTGAACCACCTCAGCCTCATCCAGTTCATGATAATCGGCGGGAAGACGAACAGGTAAACGAAGGCGATGGCGGCCACCGTCGGCAGGATCCCCAGGATGTCGAGGTCCTCCTCGCCCGTCACCGCCAGCGCCGCCGGGGCCTCAACCGCTGCCCAGATGGCACCGCACTGCAGCGCCGCGGCCAGCTTCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGGCGGGCGGCGGTGCAAGAGGAGGCGTGTCATGGAGGAGGCAGAGGAGCCTCGTCGTCCGC]

[+] EMBL CB682659             [CCTTTTTTTTTTAGATTTTGCCAACACCTGCAACTTATCTAGCAACCCTTTTCCCAAGCACAACATATGCTTCGGTGCCTGGGCTAGTGTAATATTGCATCATTATCATTTCCCTTTCTTTTATGTGAGATCTCACTTTGCTCTCGATACATCCAAGAAGATTGTGGCACCATGCATGTTTTACAAATCCATGCAAAGAAATGCTATTTTTTTTCGAAAAGAATACGGTCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGTGGGTATCTGTCCTTGAACAACGGTGTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTGAAGTTGACGAATGGTGCCCACAACATCATCCCGGGGAAGAAGAGGTAGGTGAACATGAACTGCAGGTACGTCTCGACGAACTTGCGCTTGAACCACCTCAGCCTCATCCAGTTCATGATAATCGGCGGGAAGACGAACAGGTAAACGAAGGCGATGGCGGCCACCGTCGGCAGGATCCCCAGGATGTCGAGGTCCTCCTCGCCCGTCACCGCCAGCGCCGCCGGGGCCTCAACCGCTGCCCAGATGGCACCGCACTGCAGCGCCGCGGCCAGCTTCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGGCGGGCGGCGGTGCAAGAGGAGGCGTGTCATGGAGGAGGCAGAGGAGCCTCGT       ]
[-] EMBL CB682658             [                                                              ACATATGCTTCGGTGCCTGGGCTAGTGTAATATTGCATCATTATCATTTCCCTTTCTTTTATGTGAGATCTCACTTTGCTCTCGATACATCCAAGAAGATTGTGGCACCATGCATGTTTTACAAATCCATGCAAAGAAATGCTATTTTTTTTCGAAAAGAATACGGTCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGTGGGTATCTGTCCTTGAACAACGGTGTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTGAAGTTGACGAATGGTGCCCACAACATCATCCCGGGGAAGAAGAGGTAGGTGAACATGAACTGCAGGTACGTCTCGACGAACTTGCGCTTGAACCACCTCAGCCTCATCCAGTTCATGATAATCGGCGGGAAGACGAACAGGTAAACGAAGGCGATGGCGGCCACCGTCGGCAGGATCCCCAGGATGTCGAGGTCCTCCTCGCCCGTCACCGCCAGCGCCGCCGGGGCCTCAACCGCTGCCCAGATGGCACCGCACTGCAGCGCCGCGGCCAGCTTCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGGCGGGCGGCGGTGCAGGAGGAGGCGTGTCATGGAGGAGGCAGAGGAGCCTCGTCGTCCGC]




>consensus_11872#4
CCTTTTTTTTTTAGATTTTGCCAACACCTGCAACTTATCTAGCAACCCTTTTCCCAAGCA
CAACATATGCTTCGGTGCCTGGGCTAGTGTAATATTGCATCATTATCATTTCCCTTTCTT
TTATGTGAGATCTCACTTTGCTCTCGATACATCCAAGAAGATTGTGGCACCATGCATGTT
TTACAAATCCATGCAAAGAAATGCTATTTTTTTTCGAAAAGAATACGGTCTAGTACTTCT
GATCACTTGTAGGTTTCTATAGGTGGGTATCTGTCCTTGAACAACGGTGTGCCTTCCTTT
GGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTGAAGTTGACGAAT
GGTGCCCACAACATCATCCCGGGGAAGAAGAGGTAGGTGAACATGAACTGCAGGTACGTC
TCGACGAACTTGCGCTTGAACCACCTCAGCCTCATCCAGTTCATGATAATCGGCGGGAAG
ACGAACAGGTAAACGAAGGCGATGGCGGCCACCGTCGGCAGGATCCCCAGGATGTCGAGG
TCCTCCTCGCCCGTCACCGCCAGCGCCGCCGGGGCCTCAACCGCTGCCCAGATGGCACCG
CACTGCAGCGCCGCGGCCAGCTTCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGGCGGGC
GGCGGTGCAAGAGGAGGCGTGTCATGGAGGAGGCAGAGGAGCCTCGTCGTCCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11872#1      ---------------------------------------TGCCTTAACTGTGAAACAGAA 21
consensus_11872#4      ------------------------------------------------------------
consensus_11872#2      --------------------------------TCTTTTAAGTTTTAACTGTGAAACAGAA 28
consensus_11872#0      ------------------------------------------------------------
consensus_11872#3      GTAGGAAAGTATTTTTTGAAGATGATCATGAGAAAACGGTGCCTTAACTGTGAAACAGAA 60
                                                                                   

consensus_11872#1      AGACAGGCTGCTACTCCAGTACTAGATTTTGCCAACACCTGCAACTTATCTAGCAACC-T 80
consensus_11872#4      -----------CCTTTTTTTTTTAGATTTTGCCAACACCTGCAACTTATCTAGCAACCCT 49
consensus_11872#2      AGACAGGCTGCTACTCCAGTACTAGATTTTGCCAACACCTGCAACTTATCTAGCAACC-T 87
consensus_11872#0      -------------------CCCTTTATTTTTTTTTTTTTTTTTTTTTTTTTAGCAACC-T 40
consensus_11872#3      AGACAGGCTGCTACTCCAGTACTAGATTTTGCCAACACCTGCAACTTATCTAGCAACC-T 119
                                             *  *****         *     ** * ******** *

consensus_11872#1      TTTCCCAAGCACAACATATGCTTCGGTGCCTGGGCTAGTGTAATATTGCATCATTATCAT 140
consensus_11872#4      TTTCCCAAGCACAACATATGCTTCGGTGCCTGGGCTAGTGTAATATTGCATCATTATCAT 109
consensus_11872#2      TTTCCCAAGCACAACATATGCTTCGGTGCCTGGGCTAGTGTAATATTGCATCATTATCAT 147
consensus_11872#0      TTTCCCAAGCACAACATATGCTTCGGGGCCTGGGCTAGTGTAATATTGCATCATTATCAT 100
consensus_11872#3      TTTCCCAAGCACAACATATGCTTCGGTGCCTGGGCTAGTGTAATATTGCATCATTATCAT 179
                       ************************** *********************************

consensus_11872#1      TTCCCTTTCTTTTATGTGAGATCTCACTTTGCTCTCGATACATCCAAGAAGATTGTGGCA 200
consensus_11872#4      TTCCCTTTCTTTTATGTGAGATCTCACTTTGCTCTCGATACATCCAAGAAGATTGTGGCA 169
consensus_11872#2      TTCCCTTTCTTTTATGTGAGATCTCACTTTGCTCTCGATACATCCAAGAAGATTGTGGCA 207
consensus_11872#0      TTCCCTTTCTTTTATGGGAAATCTCACTTTGCTCTCGATACATCCAAAAAAATTGGGGCA 160
consensus_11872#3      TTCCCTTTCTTTTATGTGAGATCTCACTTTGCTCTCGATACATCCAAGAAGATTGTGGCA 239
                       **************** ** *************************** ** **** ****

consensus_11872#1      CCATGCATGTTTTACAAATCCATGCAAAGAAATGCTATTTTTTT--CGAAAAGAATACGG 258
consensus_11872#4      CCATGCATGTTTTACAAATCCATGCAAAGAAATGCTATTTTTTTT-CGAAAAGAATACGG 228
consensus_11872#2      CCATGCATGTTTTACAAATCCATGCAAAGAAATGCTATTTTGTTT-CGAAAAGAATACGG 266
consensus_11872#0      CCATGCATGTTTTACAAATCCATGCAAAAAAATGCTATTTTTTTTTCGAAAAAAATACGG 220
consensus_11872#3      CCATGCATGTTTTACAAATCCATGCAAAGAAATGCTATTTTTTTT-CGAAAAGAATACGG 298
                       **************************** ************ **  ****** *******

consensus_11872#1      TCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGTGGGTATCTGTCCTTGAACAACGGT 318
consensus_11872#4      TCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGTGGGTATCTGTCCTTGAACAACGGT 288
consensus_11872#2      TCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGTGGGTATCTGTCCTTGAACAACGGT 326
consensus_11872#0      GCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGGGGGTATCTGTCCTTGAACAACGGG 280
consensus_11872#3      TCTAGTACTTCTGATCACTTGTAGGTTTCTATAGGTGGGTATCTGTCCTTGAACAACGGT 358
                        ********************************** *********************** 

consensus_11872#1      GTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTG 378
consensus_11872#4      GTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTG 348
consensus_11872#2      GTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTG 386
consensus_11872#0      GTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTG 340
consensus_11872#3      GTGCCTTCCTTTGGCTTGGACCAAGGGTACTTCATGGTTGGATCCCTTGGGAACTTCCTG 418
                       ************************************************************

consensus_11872#1      AAGTTGACGAATGGTGCCCACAACATCATCCCGGGGAAGAAGAGGTAGGTGAACATGAAC 438
consensus_11872#4      AAGTTGACGAATGGTGCCCACAACATCATCCCGGGGAAGAAGAGGTAGGTGAACATGAAC 408
consensus_11872#2      AAGTTGACGAATGGTGCCCACAACATCATCCCGGGGAAGAAGAGGTACGTGAACATGAAC 446
consensus_11872#0      AAGTTGACGAATGGTGCCCACAACATCATCCTGCAAAATGGTAAAAATGCCCACA-GACA 399
consensus_11872#3      AAGTTGACGAATGGTGCCCACAACATCATCCTGCAAAATGGTAGAGATGCACACA-GACA 477
                       ******************************* *   **    *   * *   *** **  

consensus_11872#1      TGCAGGTACGTCTCGACGAACTTGCGCTTGAACCACCT-CAGCCTCATCCA---GTTCAT 494
consensus_11872#4      TGCAGGTACGTCTCGACGAACTTGCGCTTGAACCACCT-CAGCCTCATCCA---GTTCAT 464
consensus_11872#2      TGCAGGTACGTCTCGACGAACTTGCGCTTGAACCACCT-CAGCCTCATCCA---GTTCAT 502
consensus_11872#0      AGGAATTGGGTTCAATTGATACTATGACTAGGCCATTCACAGCAAGAAATATATGTTGTT 459
consensus_11872#3      AGGAATTGGGTTCAATTGATACTATGACTAGGCCATTCACAGCAAGAGATATATGTTGTT 537
                        * *  *  **      **   *  *  *   ***    ****   *   *   ***  *

consensus_11872#1      GATAATCGGCTGCAGAAACAAAGGAAAAAAAACCATCACAAACCTGTACACCCGATCTCT 554
consensus_11872#4      GATAATCGGC-------------------------------------------------- 474
consensus_11872#2      GATAATCGGC-------------------------------------------------- 512
consensus_11872#0      GAAAATGGGA-------------------------------------------------- 469
consensus_11872#3      GAAGATGGGA-------------------------------------------------- 547
                       **  ** **                                                   

consensus_11872#1      GAATTAGCCTCGCAAGAAACCAAGAATGGCGGCCCGGATCTCACCGGGAAGACGAACAGG 614
consensus_11872#4      ---------------------------------------------GGGAAGACGAACAGG 489
consensus_11872#2      ---------------------------------------------GGGAAGACGAACAGG 527
consensus_11872#0      ----------------ATTTTGAGTTTCACGGTTATTTGGTTCACACAAACAAAATTTGG 513
consensus_11872#3      ----------------ATTTTGAGTTTCACGGTTATTTGGTTCACACAAACAAAATTTGG 591
                                                                       ** *  *   **

consensus_11872#1      TAAACGAAGGCG-ATGGCGGCCACCGTCGGCAGGATCCCCAG------GATGTCGAGGTC 667
consensus_11872#4      TAAACGAAGGCG-ATGGCGGCCACCGTCGGCAGGATCCCCAG------GATGTCGAGGTC 542
consensus_11872#2      TAAACGAAGGCG-ATGGCGGCCACCGTCGGCAGGATCCCCAG------GATGTCGAGGTC 580
consensus_11872#0      CAACGGCATGCGCATCGATTCCATTGATATGATGATCTTCGGCAAAGCAATACTGCAGTC 573
consensus_11872#3      CAACGGCATGCGCATCGATTCCATTGATATGATGATCTTCGGCAAAGCAATACTGCAGTC 651
                        **  * * *** ** *   ***  *     * ****  * *       **   *  ***

consensus_11872#1      CTCCTCG-----CCCGTCACCGCCAGCGCCGCCGGGGCCTCAACCGCTGCCCAGATGGCA 722
consensus_11872#4      CTCCTCG-----CCCGTCACCGCCAGCGCCGCCGGGGCCTCAACCGCTGCCCAGATGGCA 597
consensus_11872#2      CTCCTCG-----CCCGTCACCGCCAGCGCCGCCGGGGCCTCAACCGCTGCCCAGATGGCG 635
consensus_11872#0      CTTTTTAAAAAATTTATGGTCCTTAGAATGTACGGAGAGATGCCAAATTTTATAACAGAA 633
consensus_11872#3      CTTTTTAGAAAATTTATGGTCCTTAGAATGTACGGAGAGATGCCAAATTTTATAACAGAA 711
                       **  *           *   *   **      *** *      *   *      *  *  

consensus_11872#1      CCGC-ACTGCAGCGCCGCGGCCAGCTTCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGGC 781
consensus_11872#4      CCGC-ACTGCAGCGCCGCGGCCAGCTTCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGGC 656
consensus_11872#2      CCGC-ACTGCAGCGCCGCGGCCAGCTTCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGGC 694
consensus_11872#0      AAATTAATTCTACACCGCAGTAAAATTTAGTAACTCTGGGTATCTCCTTAAGACAGCAAA 693
consensus_11872#3      AAATTAATTCTACACCGCAGTAAAATTTAGTAACTCTGGGTATCTCCTTAAGACAGCAAA 771
                            * * *  * **** *  *  **  * * *   **  * **  *   * ****   

consensus_11872#1      GGGCGGCGGTGCAGGAGGAGGCGTGTCATGGAGGAGGCAGAGGAGCCTCGTCGTCCGC-- 839
consensus_11872#4      GGGCGGCGGTGCAAGAGGAGGCGTGTCATGGAGGAGGCAGAGGAGCCTCGTCGTCCGC-- 714
consensus_11872#2      GGGCGGCGGCGCAGGAGGAGGC-TGCCGAAACGGATGGCAAGAAACAACACGGCAAGTGA 753
consensus_11872#0      ATATGTATATATATTTAAATTTTTGTCCAGAGGGATAGAGCAGATCACTAGATGATTATC 753
consensus_11872#3      ATATGTATATAT------------------------------------------------ 783
                           *                                                       

consensus_11872#1      ------------------------------------------------------------
consensus_11872#4      ------------------------------------------------------------
consensus_11872#2      TTAATGGCGCTGATCGATCGATCGATCGATCGGGGAGATTCGAGAGAGACGGATGTT--- 810
consensus_11872#0      TTTGCTGCATTAATGCTCAACAGAAAATCAGATTGAAAGGTAATTACAATACTATATATT 813
consensus_11872#3      ------------------------------------------------------------
                                                                                   

consensus_11872#1      ------------------------------------------------------------
consensus_11872#4      ------------------------------------------------------------
consensus_11872#2      ------------------------------------------------------------
consensus_11872#0      CACGATTCGAAGATGCCGCATTTTGTTCTTTAATTTGTTCTTTGTAAGCATACGTGGTAG 873
consensus_11872#3      ------------------------------------------------------------
                                                                                   

consensus_11872#1      ------------------------------------------------------------
consensus_11872#4      ------------------------------------------------------------
consensus_11872#2      ------------------------------------------------------------
consensus_11872#0      CAAGAGGCAACTCACCCGGGGAAGAAGAGGTAGGTGAACATGAACTGCAGGTACGTCTCG 933
consensus_11872#3      ------------------------------------------------------------
                                                                                   

consensus_11872#1      ------------------------------------------------------------
consensus_11872#4      ------------------------------------------------------------
consensus_11872#2      ------------------------------------------------------------
consensus_11872#0      ACGAACTTGCGCTTGAACCACCTCAGCCTCATCCAGTTCATGATAATCGGCGGGAAGACG 993
consensus_11872#3      ------------------------------------------------------------
                                                                                   

consensus_11872#1      ------------------------------------------------------------
consensus_11872#4      ------------------------------------------------------------
consensus_11872#2      ------------------------------------------------------------
consensus_11872#0      AACAGGTAAACGAAGGCGATGGCGGCCACCGTCGGCAGGATCCCCAGGATGTCGAGGTCC 1053
consensus_11872#3      ------------------------------------------------------------
                                                                                   

consensus_11872#1      ------------------------------------------------------------
consensus_11872#4      ------------------------------------------------------------
consensus_11872#2      ------------------------------------------------------------
consensus_11872#0      TCCTCGCCCGTCACCGCCAGCGCCGCCGGGGCCTCAACCGCTGCCCAGATGGCACCGCAC 1113
consensus_11872#3      ------------------------------------------------------------
                                                                                   

consensus_11872#1      ------------------------------------------------------------
consensus_11872#4      ------------------------------------------------------------
consensus_11872#2      ------------------------------------------------------------
consensus_11872#0      TGCAGCGCCGCGGCCAGCTTCCGCAGCGGCGGCGAGCTGATCTCGTCAGCGGCGGGCGGC 1173
consensus_11872#3      ------------------------------------------------------------
                                                                                   

consensus_11872#1      ---------------------------------------------------
consensus_11872#4      ---------------------------------------------------
consensus_11872#2      ---------------------------------------------------
consensus_11872#0      GGTGCAGGAGGAGGCGTGTCATGGAGGAGGCAGAGGAGCCTCGTCGTCCGC 1224
consensus_11872#3      ---------------------------------------------------