cluster # 11880

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Oryza sativa
cluster # 11880 cluster # 11880 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11880#0 length = 1087 sequences # 8

consensus_11880#1 length = 338 sequences # 1

consensusID : consensus_11880#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1087
fasta sequence

                              [TTGCCTTCCTTTCCAAACCAGAGAGCGGTTTACAGAAAACCGCCTTTCTCTTCTTCCGTCTTCTTCCCTTTCCATTTCTCCCTTTTCCTACCTCGCCTCGCCGCCCGCACCGAGCAAACTCAAACCCTCGCCGCAAGAAAGAAAAACAAATCGAGAGAAAAAACCCTCGCTGCTCGCCGCCCCAAGCGAA-NCAGCCATGGTGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGCGCTCTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGCGTCGACCCGGAGGCGGGGCGGCTGCAGGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGCTCCCCTTCATCC-TCCGCCGCCTCCTCCCCGCCGCGGCGTCGTCCCCGTCCGGCGCGGC-GCTCTGCCACTGCG-TCGAGACCTCG-CTCGTCG-ACGCGCCGC-GCCGCGCCATGGACGTCGTCGTCCGCAACGTCTCCCTCCGCGGCCTCATCGAGGTCGAGG-AGCGGTCC-ACCTACCGGCCGCACCCGGAGCGGCCCGAGGAGTGGACGC-AGTTCAGGCAGGAGACCACGATCCGGTGCCGACCGCTCTCGGCCCTCGCCGCCGTCGCGGAGAAGGTCGAGACCCGCTGCGCCGAGAGATTCCTGCAGAACAGCGCCAAGGGGAGGGAGGTCGTCGAGCGGATCTGCCGGTATCTCGAGGCCGAGGCCGCCGGTGCTGCATCCTCCGCCATCTGAGTTGGCCTGGTTTGCGCCTCCTCACTTGGCCTTCCTTGATCTGATCGGATCGAAGGATTCGCTCGATCTGTGCTGCGTGCGCGCGGCGGGACCTCGCCTCTTGGCCAGGTCCCTTGCAGTTTTCCATTTTTTTTTATGAAATGATGAGCTGAATCCTGAATGGAATAAAGCTTCTGGACATATACTTAATTTCTTCTTGACCGTGGAACCATGTTAACCCCAATTTGTGCCTGTTCTTGTTAAGCATATTCAGATATGCTATGACATTTCTAGTTGTTATTGTGCTGATTTGACGAAAAA]

[+] EMBL AK069653             [TTGCCTTCCTTTCCAAACCAGAGAGCGGTTTACAGAAAACCGCCTTTCTCTTCTTCCGTCTTCTTCCCTTTCCATTTCTCCCTTTTCCTACCTCGCCTCGCCGCCCGCACCGAGCAAACTCAAACCCTCGCCGCAAGAAAGAAAAACAAATCGAGAGAAAAAACCCTCGCTGCTCGCCGCCCCAAGCGAAGCCAGCCATGGTGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGCGCTCTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGCGTCGACCCGGAGGCGGGGCGGCTGCAGGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGCTCCCCTTCATCC TCCGCCGCCTCCTCCCCGCCGCGGCGTCGTCCCCGTCCGGCGCGGC GCTCTGCCACTGCG TCGAGACCTCG CTCGTCG ACGCGCCGC GCCGCGCCATGGACGTCGTCGTCCGCAACGTCTCCCTCCGCGGCCTCATCGAGGTCGAGG AGCGGTCC ACCTACCGGCCGCACCCGGAGCGGCCCGAGGAGTGGACGC AGTTCAGGCAGGAGACCACGATCCGGTGCCGACCGCTCTCGGCCCTCGCCGCCGTCGCGGAGAAGGTCGAGACCCGCTGCGCCGAGAGATTCCTGCAGAACAGCGCCAAGGGGAGGGAGGTCGTCGAGCGGATCTGCCGGTATCTCGAGGCCGAGGCCGCCGGTGCTGCATCCTCCGCCATCTGAGTTGGCCTGGTTTGCGCCTCCTCACTTGGCCTTCCTTGATCTGATCGGATCGAAGGATTCGCTCGATCTGTGCTGCGTGCGCGCGGCGGGACCTCGCCTCTTGGCCAGGTCCCTTGCAGTTTTCCATTTTTTTTTATGAAATGATGAGCTGAATCCTGAATGGAATAAAGCTTCTGGACATATACTTAATTTCTTCTTGACCGTGGAACCATGTTAACCCCAATTTGTGCCTGTTCTTGTTAAGCATATTCAGATATGCTATGACATTTCTAGTTGTTATTGTGCTGATTTGA       ]
[+] EMBL AU069253             [                                                                        CATTTCTCCCTTTTCCTACCTCGCCTCGCCGCCCGCACCGAGCAAACTCAAACCCTCGCCGCAAGAAAGAAAAACAAATCGAGAGAAAAAACCCTCGCTGCTCGCCGCCCCAAGCGAA NCAGCCATGGTGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGCGCTCTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGCGTCGACCCGGAGGCGGGGCGGCTGCAGGCTGCGCGCTNCATCACGGTGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU057507             [                                                                         ATTTCTCCCTTTTCCTACCTCGCCTCGCCGCCCGCACCGAGCAAACTCAAACCCTCGCCGCAAGAAAGAAAAACAAATCGAGAGAAAAAACCCTCGCTGCTCGCCGCCCCAAGCGAA NCAGCCATGGTGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGCGCTCTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGCGTCGACCCGGAGGCGGGGCGGCTGCAGGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGCTCCCCTTCATCCTTCCGCCGCCTCCTCCCCGCCGCGGCGTCGTCCCCGTCCGGCGCGGCGGCTCTGCCACTGCGTTCGAGACCTCGNTTCGTCGAAGGNGCCGCGGCNGGCCCATGGAAGTCGTCGTCCGCAACGTCTCCCTCCGCGGCCTCATCGAGGTCGAGGAAGCGGTCCAACTTAACGGCNGGAACCGGAGCGGCCCGAAGAGTGGAAGCAATTTCAGGCAGGAGANCAAGATCCGGTGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU057724             [                                                                         ATTTCTCCCTTTTCCTACCTCGCCTCGCCGCCCGCACCGAGCAAACTCAAACCCTCGCCGCAAGAAAGAAAAACAAATCGAGAGAAAAAACCCTCGCTGCTCGCCGCCCCAAGCGAA NCAGCCATGGTGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGCGCTCTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGCGTCGACCCGGAGGCGGGGCGGCTGCAGGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGCTCCCCTTCATCC TCCGCCGCCTCCTCCCCGCCGCGGCGTCGTCCCCGTCCGGCGCGGC GCTCTGCCACTGCG TCGAGACCTCG CTCGTCG ACGCGCCGC GCCGCGCCATGGACGTCGTCGTCCGCAACGTCTCCCTCCGCGGCCTCATCGAGGTCGAGG AGCGGTCC ACCTACCGGCCGCACCCGGAGCGGCCCGAGGAGTGGACGC A TTCAGGCAGGAGACCACGATTCGGTGCCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C73510               [                                                                                                                  CAAACTCAAACCCTCGCCGCAAGAAAGAAAAACAAATCGAGAGAAAAAACCCTCGCTGCTCGCCGCCCCAAGCGAA GCAGCCATGGTGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGCGCTCTCCCACGTNGCCGACGTCCACACCCTCCACCGTCGCGTCGACCCGGAGGCGGGGCGGCTGCAGNCTGCGCGCTCCATNACGGTGCGCTCCCCGCCGTTCCn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU165742             [                                                                                                                                                                                                                                                                                                                                                                                                                                         nccgggGGCGTCGTCCCCGTCCGGCNCGGC G TTTGCCATTG G TCGAGACCTCG TTCGTCG ACGCGCCGCNCCCGCGCCATGGACGTCGTCGTCCGCAACGTCTCCCTCCGCGGCCTCATCGAGGTCGAGG AGCGGTCC ACCTACCGGCCGCACCCGGAGCGGCCCGAGGAGTGGACGC AGTTCAGGCAGGAGACCACGATCCGGTGCCGACCGCTCTCGGCCCTCGCCGCCGTCGCGGAGAAGGTCGAGACCCGCTGCGCCGAGAGATTCCTGCAGAACAGCGCCAAGGGGAGGGAGGTCGTCGAGCGGATCTGCCGGTATCTCGAGGCCGAGGCCGCCGGTGCTGCATCCTCCGCCATCTGAGTTGGCCTGGTTTGCGCCTCCTCACTTGGCCTTCCTTGATCTGATCGGATCGAAGGATTCGCTCGATCTGTGCTGCGTGCGCGCGGCGGGACCTCGCCTCTTGGCCAGGTCCCTTGCAGTTTTCCATTTTTTTTTATGAAATGATGAGCTGAATCCTGAATGGAATAAAGCTTCTGGACATATACTTAATTTCTTCTTGACCGTGGAACCATGTTAACCCCAATTTGTGCCTGTTCTTGTTAAGCATATTCAGATATGCTATGACATTTCTAGTTGTTATTGTGCTGATTTGACGAAAAA]
[+] EMBL AU197790             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCCGGAGCGGCCCGAGGAGTGGACGC AGTTCAGGCAGGAGACCACGATCCGGTGCCGACCGCTCTCGGCCCTCGCCGCCGTCGCGGAGAAGGTCGAGACCCGCTGCGCCGAGAGATTCCTGCAGAACAGCGCCAAGGGGAGGGAGGTCGTCGAGCGGATCTGCCGGTATCTCGAGGCCGAGGCCGCCGGTGCTGCATCCTCCGCCATCTGAGTTGGCCTGGTTTGCGCCTCCTCACTTGGCCTTCCTTGATCTGATCGGATCGAAGGATTCGCTCGATCTGTGCTGCGTGCGCGCGGCGGGACCTCGCCTCTTGGCCAGGTCCCTTGCAGTTTTCCATTTTTTTTTATGAAATGATGAGCTGAATCCTGAATGGAATAAAGCTTCTGGACATATACTTAATTTCTTCTTGACCGTGGAACCATGTTAACCCCAAaaaa                                                                         ]
[+] EMBL AU101721             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGAGCGGCCCGAGGAGTGGACGC AGTTCAGGCAGGAGACCACGATCCGGTGCCGACCGCTCTCGGCCCTCGCCGCCGTCGCGGAGAAGGTCGAGACCC NTGCGCCGAGAGATTCCTGCAGAACAGCGCCAAGGGGAGGGAGGTCGTCGAGCGGATCTGCCGGTATCTCGAGGCCGAGGCCGCCGGTGCTGCATCCTCCGCCATCTGAGTTGGCCTGGTTTGCGCCTCCTCACTTGGCCTTCCTTGATCTGATCGGATCGAAGGATTCGCTCGATCTGTGCTGCGTGCGCGCGGCGGGACCTCGCCTCTTGGCCAGGTCCCTTGCAGTTTTCCATTTTTTTTTATGAAATGATGAGCTGAATCCTGAATGGAATAAAGCTTCTGGACATATACTTAATTTCTTCTTGACCGTGGAACCATGTTAACCCCAAaaaa                                                                         ]




>consensus_11880#0
TTGCCTTCCTTTCCAAACCAGAGAGCGGTTTACAGAAAACCGCCTTTCTCTTCTTCCGTC
TTCTTCCCTTTCCATTTCTCCCTTTTCCTACCTCGCCTCGCCGCCCGCACCGAGCAAACT
CAAACCCTCGCCGCAAGAAAGAAAAACAAATCGAGAGAAAAAACCCTCGCTGCTCGCCGC
CCCAAGCGAANCAGCCATGGTGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGA
CCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGCGCTCTC
CCACGTCGCCGACGTCCACACCCTCCACCGCCGCGTCGACCCGGAGGCGGGGCGGCTGCA
GGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGCTCCCCTTCATCCTCCGCCGCCTCCT
CCCCGCCGCGGCGTCGTCCCCGTCCGGCGCGGCGCTCTGCCACTGCGTCGAGACCTCGCT
CGTCGACGCGCCGCGCCGCGCCATGGACGTCGTCGTCCGCAACGTCTCCCTCCGCGGCCT
CATCGAGGTCGAGGAGCGGTCCACCTACCGGCCGCACCCGGAGCGGCCCGAGGAGTGGAC
GCAGTTCAGGCAGGAGACCACGATCCGGTGCCGACCGCTCTCGGCCCTCGCCGCCGTCGC
GGAGAAGGTCGAGACCCGCTGCGCCGAGAGATTCCTGCAGAACAGCGCCAAGGGGAGGGA
GGTCGTCGAGCGGATCTGCCGGTATCTCGAGGCCGAGGCCGCCGGTGCTGCATCCTCCGC
CATCTGAGTTGGCCTGGTTTGCGCCTCCTCACTTGGCCTTCCTTGATCTGATCGGATCGA
AGGATTCGCTCGATCTGTGCTGCGTGCGCGCGGCGGGACCTCGCCTCTTGGCCAGGTCCC
TTGCAGTTTTCCATTTTTTTTTATGAAATGATGAGCTGAATCCTGAATGGAATAAAGCTT
CTGGACATATACTTAATTTCTTCTTGACCGTGGAACCATGTTAACCCCAATTTGTGCCTG
TTCTTGTTAAGCATATTCAGATATGCTATGACATTTCTAGTTGTTATTGTGCTGATTTGA
CGAAAAA

consensusID : consensus_11880#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [TTCTTACTTGGCTTGGCCGCCCGGAACCGNGCAAANTNAAACCNTCGCCGNAGGAAAGAAAAACAAATCGAGAGAAAAAACCNTCGTTGTTCGCCGCCCCAAGCGAAGCCAGCCATGGGNGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGNGCTNTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGNGTCGACCCGGAGGCGGGGCGGNTGCAGGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGTTCCCCTTCATCCTCCGCCGCCTCC]

[-] EMBL AU181823             [TTCTTACTTGGCTTGGCCGCCCGGAACCGNGCAAANTNAAACCNTCGCCGNAGGAAAGAAAAACAAATCGAGAGAAAAAACCNTCGTTGTTCGCCGCCCCAAGCGAAGCCAGCCATGGGNGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGNGCTNTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGNGTCGACCCGGAGGCGGGGCGGNTGCAGGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGTTCCCCTTCATCCTCCGCCGCCTCC]




>consensus_11880#1
TTCTTACTTGGCTTGGCCGCCCGGAACCGNGCAAANTNAAACCNTCGCCGNAGGAAAGAA
AAACAAATCGAGAGAAAAAACCNTCGTTGTTCGCCGCCCCAAGCGAAGCCAGCCATGGGN
GGTGTACACGCAGGAGCACGTGTACCGGCACCCGTGGGACCGCGTCACGGCGGCGGCGTG
GCGGAAGTTCACCGACCCGGCGTCGCGCACGGNGCTNTCCCACGTCGCCGACGTCCACAC
CCTCCACCGCCGNGTCGACCCGGAGGCGGGGCGGNTGCAGGCTGCGCGCTCCATCACGGT
GCGCTCCCCGCCGTTCCCCTTCATCCTCCGCCGCCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11880#0      TTGCCTTCCTTTCCAAACCAGAGAGCGGTTTACAGAAAACCGCCTTTCTCTTCTTCCGTC 60
consensus_11880#1      ------------------------------------------------------------
                                                                                   

consensus_11880#0      TTCTTCCCTTTCCATTTCTCCCTTTTCCTACCTCGCCTCGCCGCCCGCA-CCGAGCAAAC 119
consensus_11880#1      ------------------------TTCTTACTTGGCTTGGCCGCCCGGAACCGNGCAAAN 36
                                               *** *** * ** * ******** * *** ***** 

consensus_11880#0      TCAAACCCTCGCCGCAAGAAAGAAAAACAAATCGAGAGAAAAAACCCTCGCTGCTCGCCG 179
consensus_11880#1      TNAAACCNTCGCCGNAGGAAAGAAAAACAAATCGAGAGAAAAAACCNTCGTTGTTCGCCG 96
                       * ***** ****** * ***************************** *** ** ******

consensus_11880#0      CCCCAAGCGAANC-AGCCATGG-TGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTG 237
consensus_11880#1      CCCCAAGCGAAGCCAGCCATGGGNGGTGTACACGCAGGAGCACGTGTACCGGCACCCGTG 156
                       *********** * ********  ************************************

consensus_11880#0      GGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGCGCT 297
consensus_11880#1      GGACCGCGTCACGGCGGCGGCGTGGCGGAAGTTCACCGACCCGGCGTCGCGCACGGNGCT 216
                       ******************************************************** ***

consensus_11880#0      CTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGCGTCGACCCGGAGGCGGGGCGGCT 357
consensus_11880#1      NTCCCACGTCGCCGACGTCCACACCCTCCACCGCCGNGTCGACCCGGAGGCGGGGCGGNT 276
                        *********************************** ********************* *

consensus_11880#0      GCAGGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGCTCCCCTTCATCCTCCGCCGCCT 417
consensus_11880#1      GCAGGCTGCGCGCTCCATCACGGTGCGCTCCCCGCCGTTCCCCTTCATCCTCCGCCGCCT 336
                       ************************************* **********************

consensus_11880#0      CCTCCCCGCCGCGGCGTCGTCCCCGTCCGGCGCGGCGCTCTGCCACTGCGTCGAGACCTC 477
consensus_11880#1      CC---------------------------------------------------------- 338
                       **                                                          

consensus_11880#0      GCTCGTCGACGCGCCGCGCCGCGCCATGGACGTCGTCGTCCGCAACGTCTCCCTCCGCGG 537
consensus_11880#1      ------------------------------------------------------------
                                                                                   

consensus_11880#0      CCTCATCGAGGTCGAGGAGCGGTCCACCTACCGGCCGCACCCGGAGCGGCCCGAGGAGTG 597
consensus_11880#1      ------------------------------------------------------------
                                                                                   

consensus_11880#0      GACGCAGTTCAGGCAGGAGACCACGATCCGGTGCCGACCGCTCTCGGCCCTCGCCGCCGT 657
consensus_11880#1      ------------------------------------------------------------
                                                                                   

consensus_11880#0      CGCGGAGAAGGTCGAGACCCGCTGCGCCGAGAGATTCCTGCAGAACAGCGCCAAGGGGAG 717
consensus_11880#1      ------------------------------------------------------------
                                                                                   

consensus_11880#0      GGAGGTCGTCGAGCGGATCTGCCGGTATCTCGAGGCCGAGGCCGCCGGTGCTGCATCCTC 777
consensus_11880#1      ------------------------------------------------------------
                                                                                   

consensus_11880#0      CGCCATCTGAGTTGGCCTGGTTTGCGCCTCCTCACTTGGCCTTCCTTGATCTGATCGGAT 837
consensus_11880#1      ------------------------------------------------------------
                                                                                   

consensus_11880#0      CGAAGGATTCGCTCGATCTGTGCTGCGTGCGCGCGGCGGGACCTCGCCTCTTGGCCAGGT 897
consensus_11880#1      ------------------------------------------------------------
                                                                                   

consensus_11880#0      CCCTTGCAGTTTTCCATTTTTTTTTATGAAATGATGAGCTGAATCCTGAATGGAATAAAG 957
consensus_11880#1      ------------------------------------------------------------
                                                                                   

consensus_11880#0      CTTCTGGACATATACTTAATTTCTTCTTGACCGTGGAACCATGTTAACCCCAATTTGTGC 1017
consensus_11880#1      ------------------------------------------------------------
                                                                                   

consensus_11880#0      CTGTTCTTGTTAAGCATATTCAGATATGCTATGACATTTCTAGTTGTTATTGTGCTGATT 1077
consensus_11880#1      ------------------------------------------------------------
                                                                                   

consensus_11880#0      TGACGAAAAA 1087
consensus_11880#1      ----------