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Oryza sativa
cluster # 11882 cluster # 11882       Sequences # 9       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11882#0 length = 826 sequences # 1  
consensus_11882#1 length = 753 sequences # 4  
consensus_11882#2 length = 701 sequences # 1  
consensus_11882#3 length = 334 sequences # 1  
consensus_11882#4 length = 245 sequences # 1  
consensus_11882#5 length = 234 sequences # 1  

consensusID : consensus_11882#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 826
fasta sequence
                              [ACTAAAAATCGAAAAAAAGGAAAAAAAAAACAGGTGAGAAGAAACGGGAGTCGGAGACGACCAAGATTCGCCGCCGATGGCAACGCGCGCGCCGGCGACCGGGTCCGCGACCGTGACGGTGGACCCCACCCCGTCCTCCTCCGCGCCGGCCTCGTCGGCGCCCCCGCCGGCGGCGGAGACGGTGGTGCTGCGGCTGAAGCGGCGGGCGAAGAAGAAGGTGACGTGGAAGGAGGGGACGGTGGACAACGAGTCCCTCGGCCGCAAGAGCTCCAAGAAGTGCTGCATCTTCCACAAGGACGTCCCCTTCGACGAGGATTGCAGCGACGACGACCCCGACGGCGGCCGCCGGAGCCCGCCCGGGGACGCCGGCGAGGGGACAAGCGGCGGCGGCGGTGGATGCTGCTCCTCGTCCTCGGACGGCCATGGCCATTAAATATTTCGGATTGGATAGTCAACTTATCGTGGAGCTCCGTAGCAATGCGCGAAGTTGTAATTTCAAGGGAAGAATTGCTTCTTCTGTACTGCCAACTGCCAAAACAATAGGTGAAATGATACTTTTGTTTGTTTTTGTGTTGCGACTGTGGATGCTGTGCTAGCTTTTCTTTTGTGGCATTTGCAAGAGAGAAACCTTGTAACGTATAGCTGACTTTATTGCTGGTCGTGTGTAATTCTCTTGAGATGTATTTAGTATTGCTCCTGTTGTTATTGTCACCATTCCATCGCATCAAATATCCTCTTGTTCTTTATTTTTATATTGTGGGTTGGTAGTTGTATTGTATTCACATTGATAGCAGTGTATTATGTGATGATGATTGAATATCTTACC]

[+] EMBL AK105141             [ACTAAAAATCGAAAAAAAGGAAAAAAAAAACAGGTGAGAAGAAACGGGAGTCGGAGACGACCAAGATTCGCCGCCGATGGCAACGCGCGCGCCGGCGACCGGGTCCGCGACCGTGACGGTGGACCCCACCCCGTCCTCCTCCGCGCCGGCCTCGTCGGCGCCCCCGCCGGCGGCGGAGACGGTGGTGCTGCGGCTGAAGCGGCGGGCGAAGAAGAAGGTGACGTGGAAGGAGGGGACGGTGGACAACGAGTCCCTCGGCCGCAAGAGCTCCAAGAAGTGCTGCATCTTCCACAAGGACGTCCCCTTCGACGAGGATTGCAGCGACGACGACCCCGACGGCGGCCGCCGGAGCCCGCCCGGGGACGCCGGCGAGGGGACAAGCGGCGGCGGCGGTGGATGCTGCTCCTCGTCCTCGGACGGCCATGGCCATTAAATATTTCGGATTGGATAGTCAACTTATCGTGGAGCTCCGTAGCAATGCGCGAAGTTGTAATTTCAAGGGAAGAATTGCTTCTTCTGTACTGCCAACTGCCAAAACAATAGGTGAAATGATACTTTTGTTTGTTTTTGTGTTGCGACTGTGGATGCTGTGCTAGCTTTTCTTTTGTGGCATTTGCAAGAGAGAAACCTTGTAACGTATAGCTGACTTTATTGCTGGTCGTGTGTAATTCTCTTGAGATGTATTTAGTATTGCTCCTGTTGTTATTGTCACCATTCCATCGCATCAAATATCCTCTTGTTCTTTATTTTTATATTGTGGGTTGGTAGTTGTATTGTATTCACATTGATAGCAGTGTATTATGTGATGATGATTGAATATCTTACC]


>consensus_11882#0 ACTAAAAATCGAAAAAAAGGAAAAAAAAAACAGGTGAGAAGAAACGGGAGTCGGAGACGA CCAAGATTCGCCGCCGATGGCAACGCGCGCGCCGGCGACCGGGTCCGCGACCGTGACGGT GGACCCCACCCCGTCCTCCTCCGCGCCGGCCTCGTCGGCGCCCCCGCCGGCGGCGGAGAC GGTGGTGCTGCGGCTGAAGCGGCGGGCGAAGAAGAAGGTGACGTGGAAGGAGGGGACGGT GGACAACGAGTCCCTCGGCCGCAAGAGCTCCAAGAAGTGCTGCATCTTCCACAAGGACGT CCCCTTCGACGAGGATTGCAGCGACGACGACCCCGACGGCGGCCGCCGGAGCCCGCCCGG GGACGCCGGCGAGGGGACAAGCGGCGGCGGCGGTGGATGCTGCTCCTCGTCCTCGGACGG CCATGGCCATTAAATATTTCGGATTGGATAGTCAACTTATCGTGGAGCTCCGTAGCAATG CGCGAAGTTGTAATTTCAAGGGAAGAATTGCTTCTTCTGTACTGCCAACTGCCAAAACAA TAGGTGAAATGATACTTTTGTTTGTTTTTGTGTTGCGACTGTGGATGCTGTGCTAGCTTT TCTTTTGTGGCATTTGCAAGAGAGAAACCTTGTAACGTATAGCTGACTTTATTGCTGGTC GTGTGTAATTCTCTTGAGATGTATTTAGTATTGCTCCTGTTGTTATTGTCACCATTCCAT CGCATCAAATATCCTCTTGTTCTTTATTTTTATATTGTGGGTTGGTAGTTGTATTGTATT CACATTGATAGCAGTGTATTATGTGATGATGATTGAATATCTTACC



consensusID : consensus_11882#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 753
fasta sequence
                              [GCCGCTCTAAAAGAAAGAGGGCAAGAAACGCAAGAGGGATCCAAGAAACGGGAGGAGGCGTCGACCAAGATTCGCCGCCCATGGCAACGCGCGCGCCGGCGACCGGATCCACGACCGTGACGGTGGACCCCTCCCCGTCCTCCTCCTCCTCCGCGCCGGCCTCGTCGGCTCCCCCGCCGGCGGCGGAGTCGGTGGTGCTGCGGCTGAAGCGGCGGCCGAAGAACGAAGGTGACCTGGAAGGAGGGGACGGTGGACAA-CGAGTCCCTCG-GCCGCAAGAGCTCCAAGAAGTGCTGCATCTTCCACAAGGAGGTCCCCTTCGACGAGGATTGCAGCGACGACGAGCCC-GACGGCGGCGGCGGCCGCCGGAGCCCTCCCGGGGACGCCGGCGAGGGGACAAGCGGC--GGCGGCG-GATGCTGCTCCTCGTCCT-CCCATGGTCACGGCCACGGCCACGACCATTGATCTTTTT-GATT-GAATTGTCAACTTATCGT-GGAACTA-CGCATCAATGT-GTGAAGTTATAACTTGAAGGGGAAAATTGCTTCTCTGTGCCGAAACAGTAGGTGAAATGATACTGCTTTGTTTTGTGTTGCGATTGTGGATGCTGTACTAGCTTTATTTTTGTGTGGCATTTGCAAGAGAGAAACGTTGTCCCGTATACCTGGGGTTATTTTTGGTCATGTGCCATTCTCTTGAGATGCATCAAGTATTACTCCTCTTGTTATTGTTACCATTCCATCGCATCAAATATCCTCTTGT]

[+] EMBL AU225904             [GCCGCTCTAAAAGAAAGAGGGCAAGAAACGCAAGAGGGATCCAAGAAACGGGAGGAGGCGTCGACCAAGATTCGCCGCCCATGGCAACGCGCGCGCCGGCGACCGGATCCACGACCGTGACGGTGGACCCCTCCCCGTCCTCCTCCTCCTCCGCGCCGGCCTCGTCGGCTCCCCCGCCGGCGGCGGAGTCGGTGGTGCTGCGGCTGAAGCGGCGGCCGAAGAACGAAGGTGACCTGGAAGGAGGGGACGGTGGACAAGCGAGTCCCTCGTGCCGCAAGAGCTCCAAGAAGTGCTGCATCTTCCACAAGGAGGTCCCCTTCGACGACGATTGCAGCGACCACTAGCCCAGACGGCGGCGGCGGCCGCCGGACCCCTCCCGGGGACGCCGGCGAGGGGACAAGCGGCCGGGCGGCGAGATGCTGCTCCTCGTCCTCCCCATGGTCACGGCCACGGCCACCACCATTGATCTTTTTGGATTGGAATTGTCAACTTATCGTGGGAACTACCGCATCAATGTGGTGAAGT                                                                                                                                                                                                                                                ]
[+] EMBL CA753725             [                      AAGAAACGCAAGAGGGATCCAAGAAACGGGAGGAGGCGTCGACCAAGATTCGCCGCCCATGGCAACGCGCGCGCCGGCGACCGGATCCACGACCGTGACGGTGGACCCCTCCCCGTCCTCCTCCTCCTCCGCGCCGGCCTCGTCGGCTCCCCCGCCGGCGGCGGAGTCGGTGGTGCTGCGGCTGAAGCGGCGGCCGAAGAA GAAGGTGACCTGGAAGGAGGGGACGGTGGACAA CGAGTCCCTCG GCCGCAAGAGCTCCAAGAAGTGCTGCATCTTCCACAAGGAGGTCCCCTTCGACGAGGATTGCAGCGACGACGAGCCC GACGGCGGCGGCGGCCGCCGGAGCCCTCCCGGGGACGCCGGCGAGGGGACAAGCGGC  GGCGGCG GATGCTGCTCCTCGTCCT CCCATGGTCACGGCCACGGCCACGACCATTGATCTTTTT GATT GAATTGTCNACTTATCGT GGAACTA CGCATCAATGT GTGAAGTTATAACTTGAAGGGGAAAATTGCTTCTCTGTGCCGAAACAGTAGGTGAAATGATACTGCTTTGTTTTGTGTTGCGATTGTGGATGCTGTACTAGCTTTANTTTTGTGTGGCATTT                                                                                                                             ]
[-] EMBL CB665214             [                                                                                                                                                                                                                                     TGACCTGGAAGGAGGGGACGGTGGACAA CGAGTCCCTCG GCCGCAAGAGCTCCAAGAAGTGCTGCATCTTCCACAAGGAGGTCCCCTTCGACGAGGATTGCAGCGACGACGAGCCC GACGGCGGCGGCGGCCCCCGGATCCCTCCCGGGGACCCCGCCGAGGGGACAATCGGC  GGCGGCG GATGCTGCTCCTCGTCCT CCCATGGTCACGGCCACGGCCACGACCATTGATCTTTTT GATT GAATTGTCAACTTATCGT GGAACTC CGCCTCAATGT GGGAAGTTATAACTTGAAGGGGAAAATTGCTTCTCTGTTCCGAAACAGTAGGTGAAATGATACTCCTTTGTTTTGTGTTGCGATTGTGGATGCTGTACTAGCTTTATTTTTGTGTGGCATTTGCAAGAGAGAAACGTTGTCCCGTATACCTGGGGTTATTTTTGGTCATGTGCCATTCTCTTGAGATGCATCAAGTATTACTCCTCT                                        ]
[+] EMBL CB665213             [                                                                                                                                                                                                                                             AAGGAGGCGACGGTGGACAA CGAGTCCCTCG GCCGCAAGAGCTCCAAGAAGTGCTGCATCTTCCACAAGGAGGTCCCCTTCGACGAGGATTGCAGCGACGACGAGCCC GACGGCGGCGGCGGCCGCCGGAGCCCTCCCGGGGACGCCGGCGAGGGGACAAGCGGC  GGCGGCG GATGCTGCTCCTCGTCCT CCCATGGTCACGGCCACGGCCACGACCATTGATCTTTTT GATT GAATTGTCAACTTATCGT GGAACTA CGCATCAATGT GTGAAGTTATAACTTGAAGGGGAAAATTGCTTCTCTGTGCCGAAACAGTAGGTGAAATGATACTGCTTTGTTTTGTGTTGCGATTGTGGATGCTGTACTAGCTTTATTTTTGTGTGGCATTTGCAAGAGAGAAACGTTGTACCGTATAGCTGACTTTATTGTTGGTCATGTGCAATTCTCTTGAGATGTATGAAGTATTGCTCCTGTTGTTATTGTTACCATTCCATCGCATCAAATATCCTCTTGT]


>consensus_11882#1 GCCGCTCTAAAAGAAAGAGGGCAAGAAACGCAAGAGGGATCCAAGAAACGGGAGGAGGCG TCGACCAAGATTCGCCGCCCATGGCAACGCGCGCGCCGGCGACCGGATCCACGACCGTGA CGGTGGACCCCTCCCCGTCCTCCTCCTCCTCCGCGCCGGCCTCGTCGGCTCCCCCGCCGG CGGCGGAGTCGGTGGTGCTGCGGCTGAAGCGGCGGCCGAAGAACGAAGGTGACCTGGAAG GAGGGGACGGTGGACAACGAGTCCCTCGGCCGCAAGAGCTCCAAGAAGTGCTGCATCTTC CACAAGGAGGTCCCCTTCGACGAGGATTGCAGCGACGACGAGCCCGACGGCGGCGGCGGC CGCCGGAGCCCTCCCGGGGACGCCGGCGAGGGGACAAGCGGCGGCGGCGGATGCTGCTCC TCGTCCTCCCATGGTCACGGCCACGGCCACGACCATTGATCTTTTTGATTGAATTGTCAA CTTATCGTGGAACTACGCATCAATGTGTGAAGTTATAACTTGAAGGGGAAAATTGCTTCT CTGTGCCGAAACAGTAGGTGAAATGATACTGCTTTGTTTTGTGTTGCGATTGTGGATGCT GTACTAGCTTTATTTTTGTGTGGCATTTGCAAGAGAGAAACGTTGTCCCGTATACCTGGG GTTATTTTTGGTCATGTGCCATTCTCTTGAGATGCATCAAGTATTACTCCTCTTGTTATT GTTACCATTCCATCGCATCAAATATCCTCTTGT



consensusID : consensus_11882#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 701
fasta sequence
                              [GAAACGCAAGAGGGATCCAAGAAACGGGAGGAGGCGTCGACCAAGATTCGCCGCCCATGGCAACGCGCGCGCCGGCGACCGGATCCACGACCGTGACGGTGGACCCCTCCCCGTCCTCCTCCTCCTCCGCGCCGGCCTCGTCGGCTCCCCCGCCGGCGGCGGAGTCGGTGGTGCTGCGGCTGAAGCGGCGGCCGAAGAAGAAGGTGACCTGGAAGGAGGGGACGGTGGACAACGAGTCCCTCGGCCGCAAGAGCTCCAAGAAGTGCTGCATCTTCCACAAGGAGGTCCCCTTCGACGAGGATTGCAGCGACGACGAGCCCGACGGCGGCGGCGGCCGCCGGAGCCCTCCCGGGGACGCCGGCGAGGGGACAAGCGGCGGCGGCGGATGCTGCTCCTCGTCCTCCCATGGTCACGGCCACGGCCACGACCATTGATCTTTTTGATTGAATTGGTACGAATTGTCAACTTATCGTGGAACTACGCATCAATGTGTGAAGTTATAACTTGAAGGGGAAAATTGCTTCTCTGTGCCGAAACAGTAGGTGAAATGATACTGCTTTGTTTTGTGTTGCGATTGTGGATGCTGTACTAGCTTTATTTTTGTGTGGCATTTGCAAGAGAGAAACGTTGTACCGTATAGCTGACTTTATTGTTGGTCATGTGCAATTCTCTTGAGATGTATGAAGTATTGCTCCTGTTGT]

[+] EMBL AK121231             [GAAACGCAAGAGGGATCCAAGAAACGGGAGGAGGCGTCGACCAAGATTCGCCGCCCATGGCAACGCGCGCGCCGGCGACCGGATCCACGACCGTGACGGTGGACCCCTCCCCGTCCTCCTCCTCCTCCGCGCCGGCCTCGTCGGCTCCCCCGCCGGCGGCGGAGTCGGTGGTGCTGCGGCTGAAGCGGCGGCCGAAGAAGAAGGTGACCTGGAAGGAGGGGACGGTGGACAACGAGTCCCTCGGCCGCAAGAGCTCCAAGAAGTGCTGCATCTTCCACAAGGAGGTCCCCTTCGACGAGGATTGCAGCGACGACGAGCCCGACGGCGGCGGCGGCCGCCGGAGCCCTCCCGGGGACGCCGGCGAGGGGACAAGCGGCGGCGGCGGATGCTGCTCCTCGTCCTCCCATGGTCACGGCCACGGCCACGACCATTGATCTTTTTGATTGAATTGGTACGAATTGTCAACTTATCGTGGAACTACGCATCAATGTGTGAAGTTATAACTTGAAGGGGAAAATTGCTTCTCTGTGCCGAAACAGTAGGTGAAATGATACTGCTTTGTTTTGTGTTGCGATTGTGGATGCTGTACTAGCTTTATTTTTGTGTGGCATTTGCAAGAGAGAAACGTTGTACCGTATAGCTGACTTTATTGTTGGTCATGTGCAATTCTCTTGAGATGTATGAAGTATTGCTCCTGTTGT]


>consensus_11882#2 GAAACGCAAGAGGGATCCAAGAAACGGGAGGAGGCGTCGACCAAGATTCGCCGCCCATGG CAACGCGCGCGCCGGCGACCGGATCCACGACCGTGACGGTGGACCCCTCCCCGTCCTCCT CCTCCTCCGCGCCGGCCTCGTCGGCTCCCCCGCCGGCGGCGGAGTCGGTGGTGCTGCGGC TGAAGCGGCGGCCGAAGAAGAAGGTGACCTGGAAGGAGGGGACGGTGGACAACGAGTCCC TCGGCCGCAAGAGCTCCAAGAAGTGCTGCATCTTCCACAAGGAGGTCCCCTTCGACGAGG ATTGCAGCGACGACGAGCCCGACGGCGGCGGCGGCCGCCGGAGCCCTCCCGGGGACGCCG GCGAGGGGACAAGCGGCGGCGGCGGATGCTGCTCCTCGTCCTCCCATGGTCACGGCCACG GCCACGACCATTGATCTTTTTGATTGAATTGGTACGAATTGTCAACTTATCGTGGAACTA CGCATCAATGTGTGAAGTTATAACTTGAAGGGGAAAATTGCTTCTCTGTGCCGAAACAGT AGGTGAAATGATACTGCTTTGTTTTGTGTTGCGATTGTGGATGCTGTACTAGCTTTATTT TTGTGTGGCATTTGCAAGAGAGAAACGTTGTACCGTATAGCTGACTTTATTGTTGGTCAT GTGCAATTCTCTTGAGATGTATGAAGTATTGCTCCTGTTGT



consensusID : consensus_11882#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence
                              [GAAATTTNGACCCCCAATGGACNAACCCCTCTACCNGCATGGGAACCACCCCAAATATATCCACTTACCGGGNACCACCCAACAATGTGTGAAGGTAAACTTGAAGGGGNAAATTCCTCTCTGTCCNAAACAGTAGGTGAAATGANACTGCTTTGGTTTGTGTTGCGAATGTGGATGCTGTACTANCTTTANTTTTGTGTGGCATTTNCAAGAGAGAAACGTTGTACCGTATANCTGACTTTANTGTTGGGCATGTGCAANTCTCTTGAGATGTNTGAANTANTGCTCCTGNTGNTATTGTTACCANTCCATCGCATCAAAAAAAAAAAAAAAA]

[+] EMBL AU097501             [GAAATTTNGACCCCCAATGGACNAACCCCTCTACCNGCATGGGAACCACCCCAAATATATCCACTTACCGGGNACCACCCAACAATGTGTGAAGGTAAACTTGAAGGGGNAAATTCCTCTCTGTCCNAAACAGTAGGTGAAATGANACTGCTTTGGTTTGTGTTGCGAATGTGGATGCTGTACTANCTTTANTTTTGTGTGGCATTTNCAAGAGAGAAACGTTGTACCGTATANCTGACTTTANTGTTGGGCATGTGCAANTCTCTTGAGATGTNTGAANTANTGCTCCTGNTGNTATTGTTACCANTCCATCGCATCAAAAAAAAAAAAAAAA]


>consensus_11882#3 GAAATTTNGACCCCCAATGGACNAACCCCTCTACCNGCATGGGAACCACCCCAAATATAT CCACTTACCGGGNACCACCCAACAATGTGTGAAGGTAAACTTGAAGGGGNAAATTCCTCT CTGTCCNAAACAGTAGGTGAAATGANACTGCTTTGGTTTGTGTTGCGAATGTGGATGCTG TACTANCTTTANTTTTGTGTGGCATTTNCAAGAGAGAAACGTTGTACCGTATANCTGACT TTANTGTTGGGCATGTGCAANTCTCTTGAGATGTNTGAANTANTGCTCCTGNTGNTATTG TTACCANTCCATCGCATCAAAAAAAAAAAAAAAA



consensusID : consensus_11882#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence
                              [CCAAAACAATAGGTGAAATGATACTTTTGTTTGTTTTTGTGTTGCGACTGTGGATGCTGTGCTAGCTTTTCTCTTGTGGCATTTGCAAGAGAGAAACCTTGTAACGTATAGCTGACTTTATTGCTGGTCGTGTGTAATTCTCTTGAGATGTATTTAGTATTGCTCCTGTTGTTATTGTCACCAAAAAAAAAAAAATTATAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTAGCGTAT]

[+] EMBL CF330006             [CCAAAACAATAGGTGAAATGATACTTTTGTTTGTTTTTGTGTTGCGACTGTGGATGCTGTGCTAGCTTTTCTCTTGTGGCATTTGCAAGAGAGAAACCTTGTAACGTATAGCTGACTTTATTGCTGGTCGTGTGTAATTCTCTTGAGATGTATTTAGTATTGCTCCTGTTGTTATTGTCACCAAAAAAAAAAAAATTATAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTAGCGTAT]


>consensus_11882#4 CCAAAACAATAGGTGAAATGATACTTTTGTTTGTTTTTGTGTTGCGACTGTGGATGCTGT GCTAGCTTTTCTCTTGTGGCATTTGCAAGAGAGAAACCTTGTAACGTATAGCTGACTTTA TTGCTGGTCGTGTGTAATTCTCTTGAGATGTATTTAGTATTGCTCCTGTTGTTATTGTCA CCAAAAAAAAAAAAATTATAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTAG CGTAT



consensusID : consensus_11882#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 234
fasta sequence
                              [ATGGATTGAAGGAGTAGAGCCCACCTGCCAAACCAATAGGTGAAATGAAACTTTTGTTTGTTTTTGTGTTGCGACTGTGGATGCTGTGCTAGCTTTTTTCTTGTGGCATTTGCAAGAGAGAACCCTTGTAAGGTATAGCTGACTTTATTGCGGGTGGGGGGTAATTTTCTTGAAAGGTATTTAGTATGGCTCCTGTTGTTATTGTCCCCAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF330005             [ATGGATTGAAGGAGTAGAGCCCACCTGCCAAACCAATAGGTGAAATGAAACTTTTGTTTGTTTTTGTGTTGCGACTGTGGATGCTGTGCTAGCTTTTTTCTTGTGGCATTTGCAAGAGAGAACCCTTGTAAGGTATAGCTGACTTTATTGCGGGTGGGGGGTAATTTTCTTGAAAGGTATTTAGTATGGCTCCTGTTGTTATTGTCCCCAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_11882#5 ATGGATTGAAGGAGTAGAGCCCACCTGCCAAACCAATAGGTGAAATGAAACTTTTGTTTG TTTTTGTGTTGCGACTGTGGATGCTGTGCTAGCTTTTTTCTTGTGGCATTTGCAAGAGAG AACCCTTGTAAGGTATAGCTGACTTTATTGCGGGTGGGGGGTAATTTTCTTGAAAGGTAT TTAGTATGGCTCCTGTTGTTATTGTCCCCAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11882#4      ------------------------------------------------------------
consensus_11882#5      ------------------------------------------------------------
consensus_11882#3      ------------------------------------------------------------
consensus_11882#1      GCCGCTCTAAAAGAAAGAGGGCAAGAAACGCAAGAGGGATCC-AAGAAACGGGAGGAGGC 59
consensus_11882#2      ------------------------GAAACGCAAGAGGGATCC-AAGAAACGGGAGGAGGC 35
consensus_11882#0      -----ACTAAAAATCGAAAAAAAGGAAAAAAAAAACAGGTGAGAAGAAACGGGAGTCGGA 55
                                                                                   

consensus_11882#4      ------------------------------------------------------------
consensus_11882#5      ------------------------------------------------------------
consensus_11882#3      ------------------------------------------------------------
consensus_11882#1      GTCGACCAAGATTCGCCGCCCATGGCAACGCGCGCGCCGGCGACCGGATCCACGACCGTG 119
consensus_11882#2      GTCGACCAAGATTCGCCGCCCATGGCAACGCGCGCGCCGGCGACCGGATCCACGACCGTG 95
consensus_11882#0      GACGACCAAGATTCGCCGCCGATGGCAACGCGCGCGCCGGCGACCGGGTCCGCGACCGTG 115
                                                                                   

consensus_11882#4      ------------------------------------------------------------
consensus_11882#5      ------------------------------------------------------------
consensus_11882#3      ------------------------------------------------------------
consensus_11882#1      ACGGTGGACCCCTCCCCGTCCTCCTCCTCCTCCGCGCCGGCCTCGTCGGCTCCCCCGCCG 179
consensus_11882#2      ACGGTGGACCCCTCCCCGTCCTCCTCCTCCTCCGCGCCGGCCTCGTCGGCTCCCCCGCCG 155
consensus_11882#0      ACGGTGGACCCCACCCCGTCCTC------CTCCGCGCCGGCCTCGTCGGCGCCCCCGCCG 169
                                                                                   

consensus_11882#4      ------------------------------------------------------------
consensus_11882#5      ------------------------------------------------------------
consensus_11882#3      ------------------------------------------------------------
consensus_11882#1      GCGGCGGAGTCGGTGGTGCTGCGGCTGAAGCGGCGGCCGAAGAACGAAGGTGACCTGGAA 239
consensus_11882#2      GCGGCGGAGTCGGTGGTGCTGCGGCTGAAGCGGCGGCCGAAGAA-GAAGGTGACCTGGAA 214
consensus_11882#0      GCGGCGGAGACGGTGGTGCTGCGGCTGAAGCGGCGGGCGAAGAA-GAAGGTGACGTGGAA 228
                                                                                   

consensus_11882#4      ------------------------------------------------------------
consensus_11882#5      ------------------------------------------------------------
consensus_11882#3      ------------------------------------------------------------
consensus_11882#1      GGAGGGGACGGTGGACAACGAGTCCCTCGGCCGCAAGAGCTCCAAGAAGTGCTGCATCTT 299
consensus_11882#2      GGAGGGGACGGTGGACAACGAGTCCCTCGGCCGCAAGAGCTCCAAGAAGTGCTGCATCTT 274
consensus_11882#0      GGAGGGGACGGTGGACAACGAGTCCCTCGGCCGCAAGAGCTCCAAGAAGTGCTGCATCTT 288
                                                                                   

consensus_11882#4      ------------------------------------------------------------
consensus_11882#5      ------------------------------------------------------------
consensus_11882#3      ------------------------------------------------------------
consensus_11882#1      CCACAAGGAGGTCCCCTTCGACGAGGATTGCAGCGACGACGAGCCCGACGGCGGCGGCGG 359
consensus_11882#2      CCACAAGGAGGTCCCCTTCGACGAGGATTGCAGCGACGACGAGCCCGACGGCGGCGGCGG 334
consensus_11882#0      CCACAAGGACGTCCCCTTCGACGAGGATTGCAGCGACGACGACCCCGACGGC------GG 342
                                                                                   

consensus_11882#4      ------------------------------------------------------------
consensus_11882#5      ------------------------------------------------------------
consensus_11882#3      ----------------------------------------------------------GA 2
consensus_11882#1      CCGCCGGAGCCCTCCCGGGGACGCCGGCGAGGGGACAAGCGGCGGCGGCGG---ATGCTG 416
consensus_11882#2      CCGCCGGAGCCCTCCCGGGGACGCCGGCGAGGGGACAAGCGGCGGCGGCGG---ATGCTG 391
consensus_11882#0      CCGCCGGAGCCCGCCCGGGGACGCCGGCGAGGGGACAAGCGGCGGCGGCGGTGGATGCTG 402
                                                                                   

consensus_11882#4      ------------------------------------------------------------
consensus_11882#5      ------------------------------------------------------------
consensus_11882#3      AATTTNGACCCCCAATGGACNAACCCCTCTACCNGCATGGGAACCACCCCAAATATATCC 62
consensus_11882#1      CTCCTCGTCCTCCCATGGTCACGGCCACGGCCACGACCATTGATCTTTTTGATTGAATTG 476
consensus_11882#2      CTCCTCGTCCTCCCATGGTCACGGCCACGGCCACGACCATTGATCTTTTTGATTGAATTG 451
consensus_11882#0      CTCCTCGTCCTCGGACGGCCATGGCCAT-----------TAAATATTTCGGATTGGATAG 451
                                                                                   

consensus_11882#4      ------------------------------------------------------------
consensus_11882#5      -----------------------------------------------AT-GGATTGAAGG 12
consensus_11882#3      -------------ACTTACCG-GGNACCACCCAACAATGTGTGAAGGTA-AACTTGAAGG 107
consensus_11882#1      ----------TCAACTTATCGTGGAACTACGCATCAATGTGTGAAGTTATAACTTGAAGG 526
consensus_11882#2      GTACGAATTGTCAACTTATCGTGGAACTACGCATCAATGTGTGAAGTTATAACTTGAAGG 511
consensus_11882#0      ----------TCAACTTATCGTGGAGCTCCGTAGCAATGCGCGAAGTTGTAATTTCAAGG 501
                                                                                   

consensus_11882#4      ------------------------------CCAAAACAATAGGTGAAATGATACTTTTGT 30
consensus_11882#5      AGTAGAGCCCACCT--G-------------CCAAACCAATAGGTGAAATGAAACTTTTGT 57
consensus_11882#3      GGNAAATTCCTCTC--TGT-----------CCNAAACAGTAGGTGAAATGANACT---GC 151
consensus_11882#1      GGAAAATTGCTTCT-CTGT----------GCCGAAACAGTAGGTGAAATGATACT---GC 572
consensus_11882#2      GGAAAATTGCTTCT-CTGT----------GCCGAAACAGTAGGTGAAATGATACT---GC 557
consensus_11882#0      GAAGAATTGCTTCTTCTGTACTGCCAACTGCCAAAACAATAGGTGAAATGATACTTTTGT 561
                                                     ** ** ** ************ ***   * 

consensus_11882#4      TTGTTTTTGTGTTGCGACTGTGGATGCTGTGCTAGCTTTTCTCTTGTG--GCATTTGCAA 88
consensus_11882#5      TTGTTTTTGTGTTGCGACTGTGGATGCTGTGCTAGCTTTTTTCTTGTG--GCATTTGCAA 115
consensus_11882#3      TTTGGTTTGTGTTGCGAATGTGGATGCTGTACTANCTTTANTTTTGTGTGGCATTTNCAA 211
consensus_11882#1      TTTGTTTTGTGTTGCGATTGTGGATGCTGTACTAGCTTTATTTTTGTGTGGCATTTGCAA 632
consensus_11882#2      TTTGTTTTGTGTTGCGATTGTGGATGCTGTACTAGCTTTATTTTTGTGTGGCATTTGCAA 617
consensus_11882#0      TTGTTTTTGTGTTGCGACTGTGGATGCTGTGCTAGCTT--TTCTTTTGTGGCATTTGCAA 619
                       **   ************ ************ *** ***   * ** **  ****** ***

consensus_11882#4      GAGAGAAACCTTGTAACGTATAGCTGACTTTATTGCTGGTCGTGTGTAATTCTCTTGAGA 148
consensus_11882#5      GAGAGAACCCTTGTAAGGTATAGCTGACTTTATTGCGGGTGGGGGGTAATTTTCTTGAAA 175
consensus_11882#3      GAGAGAAACGTTGTACCGTATANCTGACTTTANTGTTGGGCATGTGCAANTCTCTTGAGA 271
consensus_11882#1      GAGAGAAACGTTGTCCCGTATACCTGGGGTTATTTTTGGTCATGTGCCATTCTCTTGAGA 692
consensus_11882#2      GAGAGAAACGTTGTACCGTATAGCTGACTTTATTGTTGGTCATGTGCAATTCTCTTGAGA 677
consensus_11882#0      GAGAGAAACCTTGTAACGTATAGCTGACTTTATTGCTGGTCGTGTGTAATTCTCTTGAGA 679
                       ******* * ****   ***** ***   *** *   **    * *  * * ****** *

consensus_11882#4      TGTATTTAGTATTGCTCCTGTTGTTATTGTCACCAAAAAAAAAAAAATTATAAAAAAAAA 208
consensus_11882#5      GGTATTTAGTATGGCTCCTGTTGTTATTGTCCCCAAAAAAAAAAAAA----AAAAAAAAA 231
consensus_11882#3      TGTNTGAANTANTGCTCCTGNTGNTATTGTTACCANTCCATCGCATC----AAAAAAAAA 327
consensus_11882#1      TGCATCAAGTATTACTCCTCTTGTTATTGTTACCATTCCATCGCATCAAATATCCTCTTG 752
consensus_11882#2      TGTATGAAGTATTGCTCCTGTTGT------------------------------------ 701
consensus_11882#0      TGTATTTAGTATTGCTCCTGTTGTTATTGTCACCATTCCATCGCATCAAATATCCTCTTG 739
                        *  *  * **   *****  **                                     

consensus_11882#4      AAAAAAAAAACCCCTGTCTTGCCGTTACGTAGCGTAT----------------------- 245
consensus_11882#5      AAA--------------------------------------------------------- 234
consensus_11882#3      AAAAAAA----------------------------------------------------- 334
consensus_11882#1      T----------------------------------------------------------- 753
consensus_11882#2      ------------------------------------------------------------
consensus_11882#0      TTCTTTATTTTTATATTGTGGGTTGGTAGTTGTATTGTATTCACATTGATAGCAGTGTAT 799
                                                                                   

consensus_11882#4      ---------------------------
consensus_11882#5      ---------------------------
consensus_11882#3      ---------------------------
consensus_11882#1      ---------------------------
consensus_11882#2      ---------------------------
consensus_11882#0      TATGTGATGATGATTGAATATCTTACC 826
                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)