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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1228 fasta sequence
[GTTCTAGAAGATTTCTCTTCGCGTCGCCGGCGCTGACACCGCCGCCGCCACCGCCATCTCCGGCGAAAACCCTACCTGCACCCGTCCAGCGAGCGCCAGGAGGTA-GGCTCTAGCCGGGC-GGAGGATGGTGTTCGGGCAGGTGGTGATCGGGCCGCCGGGCTCCGGCAAGACGACCTACTGCAACGGGATGTCCCAGTTCCTCTCCCTCGTCGGCAGGAAAGTTGCGGTTATCAATCTCGATCCTGCGAATGATGTGTTGCCATATGAATGCGCCATAAACATTGAGGACCTCATAAAACTGAGTGATGTCATGTCTGAGCATTCGCTTGGTCCAAATGGAGGCCTTGTGTATTGCATGGATTACTTGGAGAAGAATATCGACTGGCTTGAGGAAAAGTTGAAACCTCTTATTGAAGATCACTATCTGTTATTTGATTTCCCGGGTCAAGTGGAACTTTTCTTTCTACACTCAAATGCGAGGAGTATTATTTACAAACTTATCAAAAAGCTAAACTTGCGGCTGACTGCCGTGCACCTTATTGATGCTCATTTGTGCTGTGATCCTGGGAAGTATGTGAGTGCATTGCTTCTTTCACTGT-CAACAATGCTACACATGGAGCTGCCACACATCAATGTTTTGTCAAAGATTGACCTCA-TTGAGAACTATGGAAACTTAGCA-TTCAACCTCAACTTCTACA-CTGATGTCGAGGATCTGTCTTATTTGCAACGCCATCTAGATCAAGATCCTCGTTCTGCCAAGTACAGGAAACTTACTAAGGAGCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGACAAGGAAAGCGTCGGCAATCTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTCATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAAATTGCAGCAGCGCCACTTGACTGGGATTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTCGTGCAGAAGACAAG-CAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTATGCTTGAATGAGAGCTCCATTTGCCCCCATGCCGCTCAGGTAGGGATGTAACATGTTGTGACATGCAAACTGGAACTGAGAAATGTACTCTCTCCATTTTAAAATGTTTGACACCATTGGCTTTTTAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK065270 [GTTCTAGAAGATTTCTCTTCGCGTCGCCGGCGCTGACACCGCCGCCGCCACCGCCATCTCCGGCGAAAACCCTACCTGCACCCGTCCAGCGAGCGCCAGGAGGTA GGCTCTAGCCGGGC GGAGGATGGTGTTCGGGCAGGTGGTGATCGGGCCGCCGGGCTCCGGCAAGACGACCTACTGCAACGGGATGTCCCAGTTCCTCTCCCTCGTCGGCAGGAAAGTTGCGGTTATCAATCTCGATCCTGCGAATGATGTGTTGCCATATGAATGCGCCATAAACATTGAGGACCTCATAAAACTGAGTGATGTCATGTCTGAGCATTCGCTTGGTCCAAATGGAGGCCTTGTGTATTGCATGGATTACTTGGAGAAGAATATCGACTGGCTTGAGGAAAAGTTGAAACCTCTTATTGAAGATCACTATCTGTTATTTGATTTCCCGGGTCAAGTGGAACTTTTCTTTCTACACTCAAATGCGAGGAGTATTATTTACAAACTTATCAAAAAGCTAAACTTGCGGCTGACTGCCGTGCACCTTATTGATGCTCATTTGTGCTGTGATCCTGGGAAGTATGTGAGTGCATTGCTTCTTTCACTGT CAACAATGCTACACATGGAGCTGCCACACATCAATGTTTTGTCAAAGATTGACCTCA TTGAGAACTATGGAAACTTAGCA TTCAACCTCAACTTCTACA CTGATGTCGAGGATCTGTCTTATTTGCAACGCCATCTAGATCAAGATCCTCGTTCTGCCAAGTACAGGAAACTTACTAAGGAGCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGACAAGGAAAGCGTCGGCAATCTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTCATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAAATTGCAGCAGCGCCACGTGACTGGGATTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTCGTGCAGAAGACAAG CAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTATGCTTGAATGAGAGCTCCATTTGCCCCCATGCCGCTCAGGTAGGGATGTAACATGTTGTGACATGCAAACTGGAACTGAGAAATGTACTCTCTCCATTTTAAAAT ]
[+] EMBL AU062528 [ TAGAAGATTTCTCTTCGCGTCGCCGGCGCTGACACCGCCGCCGCCACCGCCATCTCCGGCGAAAACCCTACCTGCACCCGTCCAGCGAGCGCCAGGAGGTAGGGCTCTAGCCGGGCGGGAGGATGGTGTTCGGGCAGGTGGTGATCGGGCCGCCGGGCTCCGGCAAGACGACCTACTGCAACGGGATGTCCCAGTTCCTCTCCCTCGTCGGCAGGAAAGTTGCGGTTATCAATCTCGATCCTGCGAATAATGTGTTGCCATATGAATGCGCCATAAACATTGAGGACCTCATAAAACTGAGTGATGTCATGTCTGAGCATTCGCTTGGTCCAAATGGAGGCCTTGTGTATTGCATGGATTACTTGGAGAAGAATATCGACTGGCTTNAGGAAAAGTTG AACCTCTTATTG AGNTCACTATCTGTTATTTGATTTCCCGGGTCAAGTGG ACTTT ]
[+] EMBL AK121253 [ AGAAGATTTCTCTTCGCGTCGCCGGCGCTGACACCGCCGCCGCCACCGCCATCTCCGGCGAAAACCCTACCTGCACCCGTCCAGCGAGCGCCAGGAGGTA GGCTCTAGCCGGGC GGAGGATGGTGTTCGGGCAGGTGGTGATCGGGCCGCCGGGCTCCGGCAAGACGACCTACTGCAACGGGATGTCCCAGTTCCTCTCCCTCGTCGGCAGGAAAGTTGCGGTTATCAATCTCGATCCTGCGAATGATGTGTTGCCATATGAATGCGCCATAAACATTGAGGACCTCATAAAACTGAGTGATGTCATGTCTGAGCATTCGCTTGGTCCAAATGGAGGCCTTGTGTATTGCATGGATTACTTGGAGAAGAATATCGACTGGCTTGAGGAAAAGTTGAAACCTCTTATTGAAGATCACTATCTGTTATTTGATTTCCCGGGTCAAGTGGAACTTTTCTTTCTACACTCAAATGCGAGGAGTATTATTTACAAACTTATCAAAAAGCTAAACTTGCGGCTGACTGCCGTGCACCTTATTGATGCTCATTTGTGCTGTGATCCTGGGAAGTATGTGAGTGCATTGCTTCTTTCACTGT CAACAATGCTACACATGGAGCTGCCACACATCAATGTTTTGTCAAAGATTGACCTCA TTGAGAACTATGGAAACTTAGCA TTCAACCTCAACTTCTACA CTGATGTCGAGGATCTGTCTTATTTGCAACGCCATCTAGATCAAGATCCTCGTTCTGCCAAGTACAGGAAACTTACTAAGGAGCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGACAAGGAAAGCGTCGGCAATCTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTCATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAAATTGCAGCAGCGCCACTTGACTGGGATTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTCGTGCAGAAGACAAG CAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTATGCTTGAATGAGAGCTCCATTTGCCCCCATGCCGCTCAGGTAGGGATGTAACATGTTGTGACATGCAAACTGGAACTGAGAAATGTACTCTCTCCATTTTAAAATGTTTGACACCATTG ]
[+] EMBL OSS1977A [ ccgAGAAGATTTCTCTTCGCGTCGCCGGCGCTGACACCGCCGCCGCCACCGCCATCTCCGGCGAAAACCCTACCTGCACCCGTCCAGCGAGCGCCAGGAGGTA GGCTCTAGCCGGGC GGAGGATGGTGTTCGGGCAGGTGGTGATCGGGCCGCCGGGCTCCGGCAAGACGACCTACTGCAACGGGATGTCCCAGTTCCTCTCCCTCGTCGGCAGGAAAGTTGCGGTTATCAATCTCGATCCTGCGAATAATGTGTTGCCATATGAATGCGCCATAAACATTGAGGACCTCATAAAACTGAGTNATGTCATGTCTGAGCATTCG TTGGTCCAAATGGAGG CTTGTGTATTTCA ]
[+] EMBL CA753847 [ AGCGAGCGCCAGGAGGTA GGCTCTAGCCGGGC GGAGGATGGTGTTCGGGCAGGTGGTGATCGGGCCGCCGGGCTCCGGCAAGACGACCTACTGCAACGGGATGTCCCAGTTCCTCTCCCTCGTCGGCAGGAAAGTTGCGGTTATCAATCTCGATCCTGCGAATGATGCGTTGCCATATGAATGCGCCATAAACATTGAGGACCTCATAAAACTGAGTGATGTCATGTCTGAGCATTCGCTTGGTCCAAATGGAGGCCTTGTGTATTGCATGGATTACTTGGAGAAGAATATCGACTGGCTTGAGGAAAAGTTGAAACCTCTTATTGAAGATCACTATCTGTTATTTGATTTCCCGGGTCAAGTGGAACTTTTCTTTCTACACTCAAATGCGAGGAGTATTATTTACAAACTTATCAAAAAGCTAAACTTGCGGCTGACTGCCGTGCACCTTATTGATGCTCATTTGTGCTGTGATCCTGGGAAGTATGTGAGTGCATTGCTTCTTTCACTGTNNCAC ATGCTACACATGGAGCTGCCACACATCAATGTTTTGTNCAAGATTGACCTCA TTGAGAACTATGGAAACTTAGCATTTCACCCTC ACTTCTACA CTGATGTCGAGGATCT ]
[+] EMBL BI799263 [ ACACATCAATGTTTTGTCAAAGATTGACCTCACTTGAGAACTATGGAAACTTAGCA TTCAACCTCAACTTCTACACCTGATGTCGAGGATCTGTCTTATTTGCAACGCCATCTAGATCAAGATCCTCGTTCTGCCAAGTACAGGAAACTTACTAAGGAGCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGACAAGGAAAGCGTCGGCAATCTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTCATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAAATTGCAGCAGCGCCACTTGACTGGGATTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTCGTGCAGAAGACAAG CAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTATGCTTGAATGAGAGCTCCATTTGCCCCCATGCCGCTCAGGTAGGGATGTAAaaaaaaaa ]
[-] EMBL CA761732 [ aagGACGAGACAAGGGGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCCTGCTATGCTTGAATGAGAGCTCCATTTGCCCCCATGCCGCTCAGGTAGGGATGTAACATGTTGTGACATGCAAACTGGAACTGAGAAATGTACTCCCTCCATTTTAAAATGTTTGACCCCATTGGCTTTTTAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[CTTTTACACTGATGTCGAGGATCTGTTTTATTTGCAACGCCATTTAGATCAAGATCCTCGTTNTGCCAAGTACAGGAAACTTACTAAGGAGCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGACAAGGAAAGCGTCGGCAATNTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTCATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAAATTGCAGCAGCGCCNCTTGACTGGGATTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTNGTGCAGAAGACAAGCAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTATGCTTGAATGAGAGCTCCATTTGCCCCCNAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU174240 [CTTTTACACTGATGTCGAGGATCTGTTTTATTTGCAACGCCATTTAGATCAAGATCCTCGTTNTGCCAAGTACAGGAAACTTACTAAGGAGCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGACAAGGAAAGCGTCGGCAATNTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTCATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAAATTGCAGCAGCGCCNCTTGACTGGGATTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTNGTGCAGAAGACAAGCAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTATGCTTGAATGAGAGCTCCATTTGCCCCCNAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11883#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 143 fasta sequence
[CCCATGCCGCTCAGGTAGGGATGTAACATGTTGTGACATGCAAACTGGAACTGAGAAATGTACTCTCTCCATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF317132 [CCCATGCCGCTCAGGTAGGGATGTAACATGTTGTGACATGCAAACTGGAACTGAGAAATGTACTCTCTCCATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11883#0 GTTCTAGAAGATTTCTCTTCGCGTCGCCGGCGCTGACACCGCCGCCGCCACCGCCATCTC 60
consensus_11883#1 ------------------------------------------------------------
consensus_11883#2 ------------------------------------------------------------
consensus_11883#0 CGGCGAAAACCCTACCTGCACCCGTCCAGCGAGCGCCAGGAGGTAGGCTCTAGCCGGGCG 120
consensus_11883#1 ------------------------------------------------------------
consensus_11883#2 ------------------------------------------------------------
consensus_11883#0 GAGGATGGTGTTCGGGCAGGTGGTGATCGGGCCGCCGGGCTCCGGCAAGACGACCTACTG 180
consensus_11883#1 ------------------------------------------------------------
consensus_11883#2 ------------------------------------------------------------
consensus_11883#0 CAACGGGATGTCCCAGTTCCTCTCCCTCGTCGGCAGGAAAGTTGCGGTTATCAATCTCGA 240
consensus_11883#1 ------------------------------------------------------------
consensus_11883#2 ------------------------------------------------------------
consensus_11883#0 TCCTGCGAATGATGTGTTGCCATATGAATGCGCCATAAACATTGAGGACCTCATAAAACT 300
consensus_11883#1 ------------------------------------------------------------
consensus_11883#2 ------------------------------------------------------------
consensus_11883#0 GAGTGATGTCATGTCTGAGCATTCGCTTGGTCCAAATGGAGGCCTTGTGTATTGCATGGA 360
consensus_11883#1 ------------------------------------------------------------
consensus_11883#2 ------------------------------------------------------------
consensus_11883#0 TTACTTGGAGAAGAATATCGACTGGCTTGAGGAAAAGTTGAAACCTCTTATTGAAGATCA 420
consensus_11883#1 ------------------------------------------------------------
consensus_11883#2 ------------------------------------------------------------
consensus_11883#0 CTATCTGTTATTTGATTTCCCGGGTCAAGTGGAACTTTTCTTTCTACACTCAAATGCGAG 480
consensus_11883#1 ------------------------------------------------------------
consensus_11883#2 ------------------------------------------------------------
consensus_11883#0 GAGTATTATTTACAAACTTATCAAAAAGCTAAACTTGCGGCTGACTGCCGTGCACCTTAT 540
consensus_11883#1 ------------------------------------------------------------
consensus_11883#2 ------------------------------------------------------------
consensus_11883#0 TGATGCTCATTTGTGCTGTGATCCTGGGAAGTATGTGAGTGCATTGCTTCTTTCACTGTC 600
consensus_11883#1 ------------------------------------------------------------
consensus_11883#2 ------------------------------------------------------------
consensus_11883#0 AACAATGCTACACATGGAGCTGCCACACATCAATGTTTTGTCAAAGATTGACCTCATTGA 660
consensus_11883#1 ------------------------------------------------------------
consensus_11883#2 ------------------------------------------------------------
consensus_11883#0 GAACTATGGAAACTTAGCATTCAACCTCAACTTCTACACTGATGTCGAGGATCTGTCTTA 720
consensus_11883#1 ------------------------------CTTTTACACTGATGTCGAGGATCTGTTTTA 30
consensus_11883#2 ------------------------------------------------------------
consensus_11883#0 TTTGCAACGCCATCTAGATCAAGATCCTCGTTCTGCCAAGTACAGGAAACTTACTAAGGA 780
consensus_11883#1 TTTGCAACGCCATTTAGATCAAGATCCTCGTTNTGCCAAGTACAGGAAACTTACTAAGGA 90
consensus_11883#2 ------------------------------------------------------------
consensus_11883#0 GCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGA 840
consensus_11883#1 GCTGTGCGATGTGATTGACGATTTTGGCTTGGTCAATTTTACAACTTTGGACATCCAGGA 150
consensus_11883#2 ------------------------------------------------------------
consensus_11883#0 CAAGGAAAGCGTCGGCAATCTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTC 900
consensus_11883#1 CAAGGAAAGCGTCGGCAATNTTGTGAAATTGATTGACAAAAGCAATGGCTATATATTTTC 210
consensus_11883#2 ---------------------------------------------------------CCC 3
*
consensus_11883#0 ATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAAATTGCAGCAGCGCCACTTGACTGGGA 960
consensus_11883#1 ATCTATAGACAGCAGTGTCGTTGAGTTCAGTAAAATTGCAGCAGCGCCNCTTGACTGGGA 270
consensus_11883#2 ATGCCGCTCAGGTAGGGATGTAACATGTTGTGACATGCAAACTGGAACTGAGAAATGTAC 63
** * ** * ** * ** * ** * * * * * **
consensus_11883#0 TTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTCGTGCAGAA 1020
consensus_11883#1 TTACTACAGAACAGCAGAGGTGCAGGAGAAGTACATGAAAGACGACGAATTNGTGCAGAA 330
consensus_11883#2 TCTCTCCATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 123
* ** ** * * * * * ** * * *** * * ** * **
consensus_11883#0 GACAAGCAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTAT 1080
consensus_11883#1 GACAAGCAAGACGCGATGAAACTGAATTTGTTTGTAATGCTTGACATGTGACCTTGCTAT 390
consensus_11883#2 AAAAAAAAAAAAAAAAAAAA---------------------------------------- 143
* ** ** * * **
consensus_11883#0 GCTTGAATGAGAGCTCCATTTGCCCCCATGCCGCTCAGGTAGGGATGTAACATGTTGTGA 1140
consensus_11883#1 GCTTGAATGAGAGCTCCATTTGCCCCCNAAAAAAAAAAAAAAAAAAAAA----------- 439
consensus_11883#2 ------------------------------------------------------------
consensus_11883#0 CATGCAAACTGGAACTGAGAAATGTACTCTCTCCATTTTAAAATGTTTGACACCATTGGC 1200
consensus_11883#1 ------------------------------------------------------------
consensus_11883#2 ------------------------------------------------------------
consensus_11883#0 TTTTTAAAAAAAAAAAAAAAAAAAAAAA 1228
consensus_11883#1 ----------------------------
consensus_11883#2 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||