Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11885 cluster # 11885       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11885#0 length = 1605 sequences # 5  
consensus_11885#1 length = 574 sequences # 2  
consensus_11885#2 length = 555 sequences # 1  
consensus_11885#3 length = 224 sequences # 1  

consensusID : consensus_11885#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1605
fasta sequence
                              [GTAGCGGTGGCGGCATCATCAGCAGCAGCAGCAGCAGCGGTGGTGGTGGTCGCCGTAGCGGCTGCCAGCTTTNACCCCCACCTCACCCGCCTCCGGCGGCGCCGCCGCTCCCGTTCCTGCGCTCGCCGGCGGCGCGGCGGGTCCTCCTCCTTTCCCTCTGGCGCGCGGGGCCCCGCCCCCTCTCCCACCCCCAACATGGAAGCCTCTAGAAGGAGGGGAAGCTGCTGATACTGTGATCGAATAATTGCCCCTTTTTCTGTTACAAGCAAATGTGATAATGGACAACCTTGGCCATAGAGAAAATGGGAGGCAAAGGCCAGACCAATATAAAGGACTTCATACCCAGTGGATGATGCCCCAGACCCAAAGGCATCTGAAGGACCATCAAAGTATGAATCTCTTGGCACTGATGAATGATAGAGATAATGCCATCCGAGAAAGGGACCATGCTCTGGCTGAGAAGAAGGCAGCCATAGCTGAGCGCGATATGGCGTTTACTCAACGGGATGCTGCAATGGCTGAGCGTAATGCTGCAGTCGTGGAAAGGGACAATGCCCTTGCTGCTCTTGAGTTAGCACGTACAAACGGATTGAACATGAATAACGGG-AATGGATTCCCCCAAGGATCTCTCAGCGGATCAAAGAACATCCACCACCACGACCAGCTTTCTCATGCTCAGTCATCACCGCTGCAACTGGCAGATTCTCCATATGATCATGCTAGAGAAATGCACATATCAGAAGCATACCCTATCTCAACAGCTCCAGGGAGTGCTGGAAAAGCAAAGAGGCCAAAGAAGAATAGTTCCCAAGCCTCTCCATTGAAGAGGCCATCAGGTGTGCTCCGGAAAACCAAGAAACCTTCTGGTGACTGGAAGAATGTCGGGATGTCTGGTTGTGGAGATGATTCTGCTCATGCTTCTGTGATGAAGAACGAGTGGAAGGACCAAAACCTTGGTCTGAATCAAGTTGCGTTTGATGATTCCACGATGCCCGCGCCTGCCTGTTCATGCACGGGGAAGCTTCGCCAATGCTACAAGTGGGGAAACGGGGGATGGCAATCATCATGTTGCACCATGAACATTTCCATGTACCCACTCCCAGTGATGCCGAACAAGCGGCATGCTCGCATGGGGGGACGGAAGATGAGCGGCGGTGCCTTCACAAAGCTGCTGAGCCGACTAGCGGCCGAAGGTCATGATCTCTCGACGCCGGTCGACCTCAAGGACCAC-TGGGCTAAGCATGGTACAAACCGGTACATCA-CCATCCGGTAGCTTGCTGATGAACGCGGATGTGA-TTCAAGCTGGAAAGATGGGGAAGATCAGGCAAATCTTGCTTCTCCTGCATTCCCTAAACCCTTTGCTAGGGCCAGTCTTTGTAAGGTTGTCATTGGTTTGTAGCGGATGTAGGTAGAATTTTGTGTTTAAAGTTCTGTAGGTTCTTCTCTCCCGTTCTGAACTCTGAATTTTCTCGTGGCTCTAGAACGCTGCAGCCCACGAGAATTAAAAAATGTAACCGTAGTCTGCAGGTATTCATCGTCAGATCATTGTATAGTTTGACAACCAGATTTATGTGGTAGTAGACCAGTAGTGAATGGCATATTTGT]

[+] EMBL AU078029             [GTAGCGGTGGCGGCATCATCAGCAGCAGCAGCAGCAGCGGTGGTGGTGGTCGCCGTAGCGGCTGCCAGCTTTNACCCCCACCTCACCCGCCTCCGGCGGCGCCGCCGCTCCCGTTCCTGCGCTCGCCGGCGGCGCGGCGGGTCCTCCTCCTTTCCCTCTGGCGCGCGGGGCCCCGCCCCCTCTCCCACCCCCAACATGGAAGCCTCTAGAAGGAGGGGAAGCTGCTGATACTGTGATCGAATAATTGCCCCTTTTTCTGTTACAAGCAAATGTGATAATGGACAACCTTGGCCATAGAGAAAATGGGAGGCAAAGGCCAGACCAATATAAAGGACTTCATACCCAGTGGATGATGCCCCAGACCCAAAGGCATCTGAAGGACCATCAAAGTATGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK070616             [       TGGCGGCATCATCAGCAGCAGCAGCAGCAGCGGTGGTGGTGGTCGCCGTAGCGGCTGCCAGCTTTGACCCCCACCTCACCCGCCTCCGGCGGCGCCGCCGCTCCCGTTCCTGCGCTCGCCGGCGGCGCGGCGGGTCCTCCTCCTTTCCCTCTGGCGCGCGGGGCCCCGCCCCCTCTCCCACCCCCAACATGGAAGCCTCTAGAAGGAGGGGAAGCTGCTGATACTGTGATCGAATAATTGCCCCTTTTTCTGTTACAAGCAAATGTGATAATGGACAACCTTGGCCATAGAGAAAATGGGAGGCAAAGGCCAGACCAATATAAAGGACTTCATACCCAGTGGATGATGCCCCAGACCCAAAGGCATCTGAAGGACCATCAAAGTATGAATCTCTTGGCACTGATGAATGATAGAGATAATGCCATCCGAGAAAGGGACCATGCTCTGGCTGAGAAGAAGGCAGCCATAGCTGAGCGCGATATGGCGTTTACTCAACGGGATGCTGCAATGGCTGAGCGTAATGCTGCAGTCGTGGAAAGGGACAATGCCCTTGCTGCTCTTGAGTTAGCACGTACAAACGGATTGAACATGAATAACGGG AATGGATTCCCCCAAGGATCTCTCAGCGGATCAAAGAACATCCACCACCACGACCAGCTTTCTCATGCTCAGTCATCACCGCTGCAACTGGCAGATTCTCCATATGATCATGCTAGAGAAATGCACATATCAGAAGCATACCCTATCTCAACAGCTCCAGGGAGTGCTGGAAAAGCAAAGAGGCCAAAGAAGAATAGTTCCCAAGCCTCTCCATTGAAGAGGCCATCAGGTGTGCTCCGGAAAACCAAGAAACCTTCTGGTGACTGGAAGAATGTCGGGATGTCTGGTTGTGGAGATGATTCTGCTCATGCTTCTGTGATGAAGAACGAGTGGAAGGACCAAAACCTTGGTCTGAATCAAGTTGCGTTTGATGATTCCACGATGCCCGCGCCTGCCTGTTCATGCACGGGGAAGCTTCGCCAATGCTACAAGTGGGGAAACGGGGGATGGCAATCATCATGTTGCACCATGAACATTTCCATGTACCCACTCCCAGTGATGCCGAACAAGCGGCATGCTCGCATGGGGGGACGGAAGATGAGCGGCGGTGCCTTCACAAAGCTGCTGAGCCGACTAGCGGCCGAAGGTCATGATCTCTCGACGCCGGTCGACCTCAAGGACCAC TGGGCTAAGCATGGTACAAACCGGTACATCA CCATCCGGTAGCTTGCTGATGAACGCGGATGTGA TTCAAGCTGGAAAGATGGGGAAGATCAGGCAAATCTTGCTTCTCCTGCATTCCCTAAACCCTTTGCTAGGGCCAGTCTTTGTAAGGTTGTCATTGGTTTGTAGCGGATGTAGGTAGAATTTTGTGTTTAAAGTTCTGTAGGTTCTTCTCTCCCGTTCTGAACTCTGAATTTTCTCGTGGCTCTAGAACGCTGCAGCCCACGAGAATTAAAAAATGTAACCGTAGTCTGCAGGTATTCATCGTCAGATCATTGTATAG                                                    ]
[+] EMBL AU078267             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              gnAGGCAGCCATAGCTGAGCGCGATATGGCGTTTACTCAACGGGNTGCTGCAATGGCTGAGCGTAATGCTGCAGTCGTNGAAAGGGACAATNCCCTTGCTGCTNTTNAGTTAGCACGTACAAACGGGTTGAACATGAATAACGGGNAATGGATTCCCCCAAGGTTCTCTCAGCGGATCAAAGAACATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CA767068             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATGAACATTTCCATGTACCCACTCCCAGTGATGCCGAACAAGCGGCATGCTCGCATGGGGGGACGGAAGATGAGCGGCGGTGCCTTCACAAAGCTGCTGAGCCGACTAGCGGCCGAAGGTCATGATCTCTCGACGCCGGTCGACCTCAAGGACCAC TGGGCTAAGCATGGTACAAACCGGTACATCA CCATCCGGTAGCTTGCTGATGAACGTGGATGTGA TTCAAGCTGGAAAGATGGGGAAGATCAGGCAAATCTTGCTTCTCCTGCATTCCCTAAACCCTTTGCTAGGGCCAGTCTTTGTAAGGTTGTCATTGGTTTGTAGCGGATGTAGGTAGAATTTTGTGTTTAAAGTTCTGTAGGTTCTTCTCTCCCGTTCTGAACTCTGAATTTTCTCGTGGCTCTAGAACGCTGCAGCCCACGAGAATTAAAAAATGTAACCGTAGTCTGCAGGTATTCATCGTCAGATCATTGTATAGTTTGACAACCAGATTTATGTGGTAGTAGACCAGTAGTGAATGGCATATTTGT]
[+] EMBL AU078268             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGACCACNTGGGCNAAGCATGGTACAAACCGGTACATCACCCATCCGNTAGCNTGCTGATGAACGCGGATGTGANGTCAANCTGGAAAGAAGGGGAAGATCAGGAAAATCTTGCTTCTCCTGAATTCCCTAAACCCTTTGCTAGGGCCAGTCTTTGTAAGGTTTNCATTGGTTTGTAGCGGATGTAGGTAGAATTTTGTGNTTANAGTTCTGTAGGNTCTTTTCNCCCGTTCTGAACTNTGAATTTTCTCGTGGCTCTAGAACTCTGCAGCCCACGAGAATTNAAAAATGTAACCGTAGTCTGCAGGTATTCATCGTCAGATCATT                                                          ]


>consensus_11885#0 GTAGCGGTGGCGGCATCATCAGCAGCAGCAGCAGCAGCGGTGGTGGTGGTCGCCGTAGCG GCTGCCAGCTTTNACCCCCACCTCACCCGCCTCCGGCGGCGCCGCCGCTCCCGTTCCTGC GCTCGCCGGCGGCGCGGCGGGTCCTCCTCCTTTCCCTCTGGCGCGCGGGGCCCCGCCCCC TCTCCCACCCCCAACATGGAAGCCTCTAGAAGGAGGGGAAGCTGCTGATACTGTGATCGA ATAATTGCCCCTTTTTCTGTTACAAGCAAATGTGATAATGGACAACCTTGGCCATAGAGA AAATGGGAGGCAAAGGCCAGACCAATATAAAGGACTTCATACCCAGTGGATGATGCCCCA GACCCAAAGGCATCTGAAGGACCATCAAAGTATGAATCTCTTGGCACTGATGAATGATAG AGATAATGCCATCCGAGAAAGGGACCATGCTCTGGCTGAGAAGAAGGCAGCCATAGCTGA GCGCGATATGGCGTTTACTCAACGGGATGCTGCAATGGCTGAGCGTAATGCTGCAGTCGT GGAAAGGGACAATGCCCTTGCTGCTCTTGAGTTAGCACGTACAAACGGATTGAACATGAA TAACGGGAATGGATTCCCCCAAGGATCTCTCAGCGGATCAAAGAACATCCACCACCACGA CCAGCTTTCTCATGCTCAGTCATCACCGCTGCAACTGGCAGATTCTCCATATGATCATGC TAGAGAAATGCACATATCAGAAGCATACCCTATCTCAACAGCTCCAGGGAGTGCTGGAAA AGCAAAGAGGCCAAAGAAGAATAGTTCCCAAGCCTCTCCATTGAAGAGGCCATCAGGTGT GCTCCGGAAAACCAAGAAACCTTCTGGTGACTGGAAGAATGTCGGGATGTCTGGTTGTGG AGATGATTCTGCTCATGCTTCTGTGATGAAGAACGAGTGGAAGGACCAAAACCTTGGTCT GAATCAAGTTGCGTTTGATGATTCCACGATGCCCGCGCCTGCCTGTTCATGCACGGGGAA GCTTCGCCAATGCTACAAGTGGGGAAACGGGGGATGGCAATCATCATGTTGCACCATGAA CATTTCCATGTACCCACTCCCAGTGATGCCGAACAAGCGGCATGCTCGCATGGGGGGACG GAAGATGAGCGGCGGTGCCTTCACAAAGCTGCTGAGCCGACTAGCGGCCGAAGGTCATGA TCTCTCGACGCCGGTCGACCTCAAGGACCACTGGGCTAAGCATGGTACAAACCGGTACAT CACCATCCGGTAGCTTGCTGATGAACGCGGATGTGATTCAAGCTGGAAAGATGGGGAAGA TCAGGCAAATCTTGCTTCTCCTGCATTCCCTAAACCCTTTGCTAGGGCCAGTCTTTGTAA GGTTGTCATTGGTTTGTAGCGGATGTAGGTAGAATTTTGTGTTTAAAGTTCTGTAGGTTC TTCTCTCCCGTTCTGAACTCTGAATTTTCTCGTGGCTCTAGAACGCTGCAGCCCACGAGA ATTAAAAAATGTAACCGTAGTCTGCAGGTATTCATCGTCAGATCATTGTATAGTTTGACA ACCAGATTTATGTGGTAGTAGACCAGTAGTGAATGGCATATTTGT



consensusID : consensus_11885#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 574
fasta sequence
                              [AGAGGACGAGACAAGGGGGTTGCACCATGAACATTTCCATGTACCCACTCCCAGTGATGCCGAACAAGCGGCATGCTCGCATGGGGGGACGGAAGATGAACGGCGGTGCCTTCACAAAGCTGCTGAGCCGACTAGCGGCCGAAGGTCATGATCTCTCGACGCCGGTCGACCTCAAGGACCACTGGGCTAAGCATGGTACAAACCGGTACATCACCATCCGGTAGCTTGCTGATGAACGTGGATGTGATTCAAGCTGGAAAGATGGGGAAGATCAGGCAAATCTTGCTTTTCCTGCATTCCCTAAACCCTTTGCTAGGGCCAGTCTTTGTAAGGTTGTCATTGGTTTGTAGCGGATGTAGGTAGAATTTTGTGTTTAAAGTTCTGTAGGTTCTTCTCTCCCGTTTTGAACTCTGAATTTTCTCGTGGCTCTAGAACGCTGCAGCCCCCGAGAATTAAAAAATGTAACCGTAGTTTGCAGGTATTTATCGTCAGATCATTGTATAGTTTGACAACCAGATTTATGTGGTAGTAGACCAGTAGTGAATGGCATATTTGTCGAAAAAAAAAAAAAAAA]

[-] EMBL CA759984             [AGAGGACGAGACAAGGGGGTTGCACCATGAACATTTCCATGTACCCACTCCCAGTGATGCCGAACAAGCGGCATGCTCGCATGGGGGGACGGAAGATGAACGGCGGTGCCTTCACAAAGCTGCTGAGCCGACTAGCGGCCGAAGGTCATGATCTCTCGACGCCGGTCGACCTCAAGGACCACTGGGCTAAGCATGGTACAAACCGGTACATCACCATCCGGTAGCTTGCTGATGAACGTGGATGTGATTCAAGCTGGAAAGATGGGGAAGATCAGGCAAATCTTGCTTTTCCTGCATTCCCTAAACCCTTTGCTAGGGCCAGTCTTTGTAAGGTTGTCATTGGTTTGTAGCGGATGTAGGTAGAATTTTGTGTTTAAAGTTCTGTAGGTTCTTCTCTCCCGTTTTGAACTCTGAATTTTCTCGTGGCTCTAGAACGCTGCAGCCCCCGAGAATTAAAAAATGTAACCGTAGTTTGCAGGTATTTATCGTCAGATCATTGTATAGTTTGACAACCAGATTTATGTGGTAGTAGACCAGTAGTGAATGGCATATTTGTCGAAAAAAAAAAAAAAAA]
[-] EMBL CA759985             [AGAGGACGAGACAAGGGGGTTGCACCATGAACATTTCCATGTACCCACTCCCAGTGATGCCGAACAAGCGGCATGCTCGCATGGGGGGACGGAAGATGAACGGCGGTGCCTTCACAAAGCTGCTGAGCCGACTAGCGGCCGAAGGTCATGATCTCTCGACGCCGGTCGACCTCAAGGACCACTGGGCTAAGCATGGTACAAACCGGTACATCACCATCCGGTAGCTTGCTGATGAACGTGGATGTGATTCAAGCTGGAAAGATGGGGAAGATCAGGCAAATCTTGCTTTTCCTGCATTCCCTAAACCCTTTGCTAGGGCCAGTCTTTGTAAGGTTGTCATTGGTTTGTAGCGGATGTAGGTAGAATTTTGTGTTTAAAGTTCTGTAGGTTCTTCTCTCCCGTTTTGAACTCTGAATTTTCTCGTGGCTCTAGAACGCTGCAGCCCCCGAGAATTAAAAAATGTAACCGTAGTTTGCAGGTATTTATCGTCAGATCATTGTATAGTTTGACAACCAGATTTATGTGGTAGTAGACCAGTAGTGAATGGCATATTTGTCGAAAAAAAAAAAAAAAA]


>consensus_11885#1 AGAGGACGAGACAAGGGGGTTGCACCATGAACATTTCCATGTACCCACTCCCAGTGATGC CGAACAAGCGGCATGCTCGCATGGGGGGACGGAAGATGAACGGCGGTGCCTTCACAAAGC TGCTGAGCCGACTAGCGGCCGAAGGTCATGATCTCTCGACGCCGGTCGACCTCAAGGACC ACTGGGCTAAGCATGGTACAAACCGGTACATCACCATCCGGTAGCTTGCTGATGAACGTG GATGTGATTCAAGCTGGAAAGATGGGGAAGATCAGGCAAATCTTGCTTTTCCTGCATTCC CTAAACCCTTTGCTAGGGCCAGTCTTTGTAAGGTTGTCATTGGTTTGTAGCGGATGTAGG TAGAATTTTGTGTTTAAAGTTCTGTAGGTTCTTCTCTCCCGTTTTGAACTCTGAATTTTC TCGTGGCTCTAGAACGCTGCAGCCCCCGAGAATTAAAAAATGTAACCGTAGTTTGCAGGT ATTTATCGTCAGATCATTGTATAGTTTGACAACCAGATTTATGTGGTAGTAGACCAGTAG TGAATGGCATATTTGTCGAAAAAAAAAAAAAAAA



consensusID : consensus_11885#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence
                              [AGGAGTAGAAACAACAGCTCCAGGGAGTGCTGGAAAAGCAAAGAGGCCAAAGAAGAATAGTTCCCAAGCCTCTCCATTGAAGAGGCCATCAGGTGTGCTCCGGAAAACCAAGAAACCTTCTGGTGACTGGAAGAATGTCGGGATGTCTGGTTGTGGAGATGATTCTGCTCATGCTTCTGTGATGAAGAACGAGTGGAAGGACCAAAACCTTGGTCTGAATCAAGTTGCGTTTGATGATTCCACGATGCCCGCGCCTGCCTGTTCATGCACGGGGAAGCTTCGCCAATGCTACAAGTGGGGAAACGGGGGATGGCAATCATCATGTTGCACCATGAACATTTCCATGTACCCACTCCCAGTGATGCCGAACAAGCGGCATGCTCGCATGGGGGGACGGAAGATGAGCGGCGGTGCCTTCACAAAGCTGCTGAGCCGACTAGCGGCCGAAGGTCATGATCTCTCGACGCCGGTCGACCTCAAGGACCACTGGGCTAAGCATGGTACAAACCGGTACATCACCATCCGGTAGCTTGCTGATGAACGCGGATGTGATTC]

[+] EMBL CF276456             [AGGAGTAGAAACAACAGCTCCAGGGAGTGCTGGAAAAGCAAAGAGGCCAAAGAAGAATAGTTCCCAAGCCTCTCCATTGAAGAGGCCATCAGGTGTGCTCCGGAAAACCAAGAAACCTTCTGGTGACTGGAAGAATGTCGGGATGTCTGGTTGTGGAGATGATTCTGCTCATGCTTCTGTGATGAAGAACGAGTGGAAGGACCAAAACCTTGGTCTGAATCAAGTTGCGTTTGATGATTCCACGATGCCCGCGCCTGCCTGTTCATGCACGGGGAAGCTTCGCCAATGCTACAAGTGGGGAAACGGGGGATGGCAATCATCATGTTGCACCATGAACATTTCCATGTACCCACTCCCAGTGATGCCGAACAAGCGGCATGCTCGCATGGGGGGACGGAAGATGAGCGGCGGTGCCTTCACAAAGCTGCTGAGCCGACTAGCGGCCGAAGGTCATGATCTCTCGACGCCGGTCGACCTCAAGGACCACTGGGCTAAGCATGGTACAAACCGGTACATCACCATCCGGTAGCTTGCTGATGAACGCGGATGTGATTC]


>consensus_11885#2 AGGAGTAGAAACAACAGCTCCAGGGAGTGCTGGAAAAGCAAAGAGGCCAAAGAAGAATAG TTCCCAAGCCTCTCCATTGAAGAGGCCATCAGGTGTGCTCCGGAAAACCAAGAAACCTTC TGGTGACTGGAAGAATGTCGGGATGTCTGGTTGTGGAGATGATTCTGCTCATGCTTCTGT GATGAAGAACGAGTGGAAGGACCAAAACCTTGGTCTGAATCAAGTTGCGTTTGATGATTC CACGATGCCCGCGCCTGCCTGTTCATGCACGGGGAAGCTTCGCCAATGCTACAAGTGGGG AAACGGGGGATGGCAATCATCATGTTGCACCATGAACATTTCCATGTACCCACTCCCAGT GATGCCGAACAAGCGGCATGCTCGCATGGGGGGACGGAAGATGAGCGGCGGTGCCTTCAC AAAGCTGCTGAGCCGACTAGCGGCCGAAGGTCATGATCTCTCGACGCCGGTCGACCTCAA GGACCACTGGGCTAAGCATGGTACAAACCGGTACATCACCATCCGGTAGCTTGCTGATGA ACGCGGATGTGATTC



consensusID : consensus_11885#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence
                              [GTAGAATTTTGTGTTTAAAGTTCTGTAGGTTCTTCTCTCCCGTTCTGAACTCTGAATTTTCTCGTGGCTNTAGANCGCTGCAGCCCACGNGAATTAAAAAATGTANCCGTAGTCTGCAGGTATTCATCGTCAGATCATTGTATAGTTTGACANCCAGATTTNTGTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU078030             [GTAGAATTTTGTGTTTAAAGTTCTGTAGGTTCTTCTCTCCCGTTCTGAACTCTGAATTTTCTCGTGGCTNTAGANCGCTGCAGCCCACGNGAATTAAAAAATGTANCCGTAGTCTGCAGGTATTCATCGTCAGATCATTGTATAGTTTGACANCCAGATTTNTGTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_11885#3 GTAGAATTTTGTGTTTAAAGTTCTGTAGGTTCTTCTCTCCCGTTCTGAACTCTGAATTTT CTCGTGGCTNTAGANCGCTGCAGCCCACGNGAATTAAAAAATGTANCCGTAGTCTGCAGG TATTCATCGTCAGATCATTGTATAGTTTGACANCCAGATTTNTGTGGTAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      GTAGCGGTGGCGGCATCATCAGCAGCAGCAGCAGCAGCGGTGGTGGTGGTCGCCGTAGCG 60
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      GCTGCCAGCTTTNACCCCCACCTCACCCGCCTCCGGCGGCGCCGCCGCTCCCGTTCCTGC 120
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      GCTCGCCGGCGGCGCGGCGGGTCCTCCTCCTTTCCCTCTGGCGCGCGGGGCCCCGCCCCC 180
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      TCTCCCACCCCCAACATGGAAGCCTCTAGAAGGAGGGGAAGCTGCTGATACTGTGATCGA 240
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      ATAATTGCCCCTTTTTCTGTTACAAGCAAATGTGATAATGGACAACCTTGGCCATAGAGA 300
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      AAATGGGAGGCAAAGGCCAGACCAATATAAAGGACTTCATACCCAGTGGATGATGCCCCA 360
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      GACCCAAAGGCATCTGAAGGACCATCAAAGTATGAATCTCTTGGCACTGATGAATGATAG 420
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      AGATAATGCCATCCGAGAAAGGGACCATGCTCTGGCTGAGAAGAAGGCAGCCATAGCTGA 480
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      GCGCGATATGGCGTTTACTCAACGGGATGCTGCAATGGCTGAGCGTAATGCTGCAGTCGT 540
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      GGAAAGGGACAATGCCCTTGCTGCTCTTGAGTTAGCACGTACAAACGGATTGAACATGAA 600
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      TAACGGGAATGGATTCCCCCAAGGATCTCTCAGCGGATCAAAGAACATCCACCACCACGA 660
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      CCAGCTTTCTCATGCTCAGTCATCACCGCTGCAACTGGCAGATTCTCCATATGATCATGC 720
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      TAGAGAAATGCACATATCAGAAGCATACCCTATCTCAACAGCTCCAGGGAGTGCTGGAAA 780
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      AGCAAAGAGGCCAAAGAAGAATAGTTCCCAAGCCTCTCCATTGAAGAGGCCATCAGGTGT 840
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      GCTCCGGAAAACCAAGAAACCTTCTGGTGACTGGAAGAATGTCGGGATGTCTGGTTGTGG 900
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      AGATGATTCTGCTCATGCTTCTGTGATGAAGAACGAGTGGAAGGACCAAAACCTTGGTCT 960
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      ------------------------------------------------------------
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      GAATCAAGTTGCGTTTGATGATTCCACGATGCCCGCGCCTGCCTGTTCATGCACGGGGAA 1020
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      -----------------------------AGAGGACGAGACAAGGGGGTTGCACCATGAA 31
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      GCTTCGCCAATGCTACAAGTGGGGAAACGGGGGATGGCAATCATCATGTTGCACCATGAA 1080
consensus_11885#2      ------------------------------------------------------------
                                                                                   

consensus_11885#1      CATTTCCATGTACCCACTCCCAGTGATGCCGAACAAGCGGCATGCTCGCATGGGGGGACG 91
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      CATTTCCATGTACCCACTCCCAGTGATGCCGAACAAGCGGCATGCTCGCATGGGGGGACG 1140
consensus_11885#2      ------------AGGAGTAGAAACAACAGCTCCAGGGAGTGCTGGAAAAGCAAAGAGGCC 48
                                                                                   

consensus_11885#1      GAAGATGAACGGCGGTGCCTTCACAAAGCTGCTGAGCCGACTAGCGGCCGAAGGTCATGA 151
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      GAAGATGAGCGGCGGTGCCTTCACAAAGCTGCTGAGCCGACTAGCGGCCGAAGGTCATGA 1200
consensus_11885#2      AAAGAAGAATAGTTCCCAAGCCTCTCCATTGAAGAGGCCATCAGGTGTGCTCCGGAAAAC 108
                                                                                   

consensus_11885#1      TCTCTCGACGCCGGTCGACCTCAAGGACCACTGGGCTAAGCATGGTACAAACCGGTACAT 211
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      TCTCTCGACGCCGGTCGACCTCAAGGACCACTGGGCTAAGCATGGTACAAACCGGTACAT 1260
consensus_11885#2      CAAGAAACCTTCTGGTGACTGGAAGAATGTCGGGATGTCTGGTTGTGGAGATGATTCTGC 168
                                                                                   

consensus_11885#1      CACCATCCGGTAGCTTGCTGATGAACGTGGATGTGATTCAAGCTGGAAAGATGGGGAAGA 271
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      CACCATCCGGTAGCTTGCTGATGAACGCGGATGTGATTCAAGCTGGAAAGATGGGGAAGA 1320
consensus_11885#2      TCATGCTTCTGTGATGAAGAACGAGTGGAAGGACCAAAACCTTGGTCTGAATCAAGTTGC 228
                                                                                   

consensus_11885#1      TCAGGCAAATCTTGCTTTTCCTGCATTCCCTAAACCCTTTGCTAGGGCCAGTCTTTGTAA 331
consensus_11885#3      ------------------------------------------------------------
consensus_11885#0      TCAGGCAAATCTTGCTTCTCCTGCATTCCCTAAACCCTTTGCTAGGGCCAGTCTTTGTAA 1380
consensus_11885#2      GTTTGATGATTCCACGATGCCCGCGCCTGCCTGTTCATGCACGGGGAAGCTTCGCCAATG 288
                                                                                   

consensus_11885#1      GGTTGTCATTGGTTTGTAGCGGATGTAGGTAGAATTTTGTGTT-TAAAGTTCTGTAGGTT 390
consensus_11885#3      ----------------------------GTAGAATTTTGTGTT-TAAAGTTCTGTAGGTT 31
consensus_11885#0      GGTTGTCATTGGTTTGTAGCGGATGTAGGTAGAATTTTGTGTT-TAAAGTTCTGTAGGTT 1439
consensus_11885#2      CTACAAGTGGGGAAACGGGGGATGGCAATCATCATGTTGCACCATGAACATTTCCATGTA 348
                                                     *  ** ***     * **  * *  * ** 

consensus_11885#1      CTTCTCTCCCGTT---TTGAACT--CTGAATTTTCTCGTGGCTCTA--------GAACGC 437
consensus_11885#3      CTTCTCTCCCGTT---CTGAACT--CTGAATTTTCTCGTGGCTNTA--------GANCGC 78
consensus_11885#0      CTTCTCTCCCGTT---CTGAACT--CTGAATTTTCTCGTGGCTCTA--------GAACGC 1486
consensus_11885#2      CCCACTCCCAGTGATGCCGAACAAGCGGCATGCTCGCATGGGGGGACGGAAGATGAGCGG 408
                       *      ** **      ****   * * **  ** * ***    *        ** ** 

consensus_11885#1      TGCAGCCCCCGAGAATTAAAAAATGTAACCGTAGTTTGCAGGTATTTATCGTCAGATCAT 497
consensus_11885#3      TGCAGCCCACGNGAATTAAAAAATGTANCCGTAGTCTGCAGGTATTCATCGTCAGATCAT 138
consensus_11885#0      TGCAGCCCACGAGAATTAAAAAATGTAACCGTAGTCTGCAGGTATTCATCGTCAGATCAT 1546
consensus_11885#2      CGGTGCCTTCACAAAGCTGCTGAGCCGACTAGCGGCCGAAGGTCATGATCTCTCGACGCC 468
                        *  ***  *   **       *     *    *   * ****  * ***    **    

consensus_11885#1      TGTATAGTTTGACAACCA----GATTTATGTGGTAGTAGACCAGTAGTGAATGGCATATT 553
consensus_11885#3      TGTATAGTTTGACANCCA----GATTTNTGTGGTAAAAAAAAAAAAAAAAAAAAAAAAAA 194
consensus_11885#0      TGTATAGTTTGACAACCA----GATTTATGTGGTAGTAGACCAGTAGTGAATGGCATATT 1602
consensus_11885#2      GGTCGACCTCAAGGACCACTGGGCTAAGCATGGTACAAACCGGTACATCACCATCCGGTA 528
                        **  *  *  *   ***    * *     *****  *           *          

consensus_11885#1      TGTCGAAAAAAAAAAAAAAAA--------- 574
consensus_11885#3      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 224
consensus_11885#0      TGT--------------------------- 1605
consensus_11885#2      GCTTGCTGATGAACGCGGATGTGATTC--- 555
                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)