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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11895#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1341 fasta sequence
[TCAGAAGAAGTTAGGTGGATGTTTAAGAGAGAACCAAAATTTGCAAGAGGAGCTTGCTGAGGCTTATAGAATTAAAAGTCAGCTTGCTGAATTACATGGGGCTGAGCTATCAAAGAACAAGGAACTAGAGAAGCAAGTAAGGTTTTTCCAAAGCAGCGTTGCTCAAGCATTTGCTGAACGAGACAATTCGTTAATGAAGTGTGAGAAAGCAAAGGAGCGAGAAGAAGCAATTTTACAAAAGTTTGCCAAATTCGAGGAAAGGACAAGAGAATATCAATCATCAATTGATGATCAGAAACGGTCAAACGATGCCTTACAAATGGAGCTGATGAGGCTTAAAGAGCAGACACAATCTTCCTTGAAAGTTATTCAAAAATTTTATGATGTTCGTTGTAGAGACTCTGAATGCTCTGTGAACATTACTCTTGAAGAAAAATGTTCAGTTCTTCTGGACGATTCTGCTGATAATTGGAGTTTCAGCTCAGATGGAGGAACCTCAACTTCGAAGTACATTGCATCTCTAGAAGAAGAGAAAGATTCACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGAGAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGCCCTAAGGGGGACATTCCTTCTGATTGTGCAACATTTGGTGAATCGGATGTGCTTGTGCAAGCTTTGCATGAGAAGATGGAGGCACTTATGCTCTTCTCACAGGAACAAGAAAGATACCTATTGGAGAAGCAGAGAAACCAAATTGTCATCGAGGAACTTCAGAAGAACTTATCTCAAGTAAAAGAGGAAAAGGTTAAAATCTTGGTAGAATTAGCAAAACTTAAAGAAGAATATCTGATGTTGAAAGGAAATTCAACACCAAAGGATGGTCATGGGGCTGTTGATAATATGAAAATCATTCCTGCACATGATCGACAAGGGATGTTTAAAACTATCATGAATAGAACATCTCTAAGACATTGGATAAAAAAAGAAAACACTAATATTGGGCATGAGTGCTCTGATGAAAACGTTCATACAGTCAGGAAACATCACTCAGAGGATCT]
[+] EMBL C72913 [TCAGAAGAAGTTAGGTGGATGTTTAAGAGAGAACCAAAATTTGCAAGAGGAGCTTGCTGAGGCTTATAGAATTAAAAGTCAGCTTGCTGAATTACATGGGGCTGAGCTATCAAAGAACAAGGAACTAGAGAAGCAAGTAAGGTTTTTCCAAAGCAGCGTTGCTCAAGCATTTGCTGAACGAGACAATTCGTTAATGAAGTGTGAGAAAGCAAAGGAGCGAGAAGAAGCAATTTTACAAAAGTTTGCCAAATTCGAGGAAAGGACAAGAGAATATCAATCATCAATTGATGATCAGAAACGGTCAAACGATGCCTTACAAATGGAGCTGATGAGGCTTAAAGAGCAGACACAATCTTCCTTGAAAGTTATTCAAAAATTTTATGATGTCCGTTGTAG GGCTCTGAATGCTCTGTGAACATTACTCTTGAGGAAAtggtcca ]
[+] EMBL CB642423 [ AGCAATTTTACAAAAGTTTGCCAAATTCGAGGAAAGGACAAGAGAATATCAATCATCAATTGATGATCAGAAACGGTCAAACGATGCCTTACAAATGGAGCTGATGAGGCTTAAAGAGCAGACACAATCTTCCTTGAAAGTTATTCAAAAATTTTATGATGTTCGTTGTAGAGACTCTGAATGCTCTGTGAACATTACTCTTGAAGAAAAATGTTCAGTTCTTCTGGACGATTCTGCTGATAATTGGAGTTTCAGCTCAGATGGAGGAACCTCAACTTCGAAGTACATTGCATCTCTAGAAGAAGAGAAAGATTCACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGAGAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGCCCTAAGGGGGACATTCCTTCTGATTGTGCAACATTTGGTGAATCGGATGTGCTTGTGNCAGCTTTGCATGAGAAGATGGAGGCACTTATGCTCTTCTCACAGGAAACAGAAAGATACCTATTGGAGAAGCAGAGAAACC ]
[+] EMBL CB642382 [ AGCAATTTTACAAAAGTTTGCCAAATTCGAGGAAAGGACAAGAGAATATCAATCATCAATTGATGATCAGAAACGGTCAAACGATGCCTTACAAATGGAGCTGATGAGGCTTAAAGAGCAGACACAATCTTCCTTGAAAGTTATTCAAAAATTTTATGATGTTCGTTGTAGAGACTCTGAATGCTCTGTGAACATTACTCTTGAAGAAAAATGTTCAGTTCTTCTGGACGATTCTGCTGATAATTGGAGTTTCAGCTCAGATGGAGGAACCTCAACTTCGAAGTACATTGCATCTCTAGAAGAAGAGAAAGATTCACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGAGAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGCCCTAAGGGGGACATTCCTTCTGATTGTGCAACATTTGGTGAATCGGATGTGCTTGTGCAAGCTTTGCATGAGAAGATGGAGGCACTTATGCTCTTCTCACAGGAAACAGAAAGATACCTA ]
[+] EMBL CB648743 [ GCAGACCCTTTCTTCCTTGAAAGTTATTCAAAAATTTTATGATGTTCGTTGTAGAGACTCTGAATGCTCTGTGAACATTACTCTTGAAGAAAAATGTTCAGTTCTTCTGGACGATTCTGCTGATAATTGGAGTTTCAGCTCAGATGGAGGAACCTCAACTTCGAA GCATCTCTAGAAGAAGAGAAAGATTCACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGAGAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGCCCTAAGGGGGACATTCCTTCTGATTGTGCAACATTTGGTGAATCGGATGTGCTTGTGCAAGCTTTGCATGAGAAGATGGAGGCACTTATGCTCTTCTCACAGGAACAAGAAAGATACCTATTGGAGAAGCAGAGAAACCAAATTGTCATCGAGGAACTTCAGAAGAACTTATCTCAAGTANAAGAGGAAAAGGGTAAAATCTTGGTAGAATTAGCAAAACTTAAAAAAGAATA ]
[+] EMBL CB618486 [ CAGCTCCCTTGGAGGAACCTCAACTTCGAA GCATCTCTAGAAGAAGAGAAAGATTCACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTGTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAACCAATGAAAACCCTGTTGGAGAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGCCCTAAGGGGGACATTCCTTCTGATTGTGCAACATTTGGTGAATCGGATGTGCTTGTGCAAGCTTTGCATGAGAAGATGGAGGCACTTATGCTCTTCTCACAGGAACAAGAAAGATACCTATTGGAGAAGCAGAGAAACCAAATTGTCATCGAGGAACTTCAGAAGAACTTATCTCAAGTAAAAGAGGAAAAGGTTAAAATCTTGGTAGAATTAGCAAAACTTAAAGAAGAATATCTGATGTTGAAAGGAAATTCAACACCAAAGGATGGTCATGGGGCTGTTGATAATATGAAAATCATTCCTGCACATGATCGACAAGGGATGTTTAAAACTATCATGAATAGAACATCTCTAAGACATTGGATAAAAAAAGAAAACACTAATATTGGGCATGAGTGCTCTGATGAA ]
[+] EMBL CB685108 [ ATCTCCTTAAGAAGAGAAAGATTCACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGAGAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGCCCTAAGGGGGACATTCCTTCTGATTGTGCAACATTTGGTGAATCGGATGTGCTTGTGCAAGCTTTGCATGAGAAGATGGAGGCACTTATGCTCTTCTCACAGGAACAAGAAAGATACCTATTGGAGAAGCAGAGAAACCAAATTGTCATCGAGGAACTTCAGAAGAACTTATCTCAAGTAAAAGAGGAAAAGGTTAAAATCTTGGTAGAATTAGCAAAACTTAAAGAAGAATATCTGATGTTGAAAGGAAATTCAACACCAAAGGATGGTCATGGGGCTGTTGATAATATGAAAATCATTCCTGCACATGATCGACAAGGGATGTTTAAAACTATCATGAATAG ]
[+] EMBL OSC107411 [ AAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGAGAGATGCAATGCTGTNACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGC ]
[+] EMBL CB648027 [ ATGAAAACCCTGTTGGAGAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGCCCTAAGGGGGACATTCCTTCTGATTGTGCAACATTTGGTGAATCGGATGTGCTTGTGCAAGCTTTGCATGAGAAGATGGAGGCACTTATGCTCTTCTCACAGGAACAAGAAAGATACCTATTGGAGAAGCAGAGAAACCAAATTGTCATCGAGGAACTTCAGAAGAACTTATCTCAAGTAAAAGAGGAAAAGGTTAAAATCTTGGTAGAATTAGCAAAACTTAAAGAAGAATATCTGATGTTGAAAGGAAATTCAACACCAAAGGATGGTCATGGGGCTGTTGATAATATGAAAATCATTCCTGCACATGATCGACAAGGGATGTTTAAAACTATCATGAATAGAACATCTCTAAGACATTGGATAAAAAAAGAAAACACTAATATTGGGCATGAGTGCTCTGATGAAAACGTTCATACAGTCAGGAAACATCACTCAGAGGATCT]
consensusID : consensus_11895#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[CTCAATTCATAGAGTTAAATTTAGGAGTTGGAGCTCTACCAAACAGGCCTAAAATGTGATCTATCCTGTCTTAGTTAATGTGGAAATCCTTTGTAACACATGAATATACATTAGTTAATGTGGAATTAATGCTAGATTCTGTTTCAGGTTATTCAAAAATTTTATGATGTTCGTTGTAGAGACTCTGAATGCTCTGTGAACATTACTCTTGAAGAAAAATGTTCAGTTCTTCTGGACGATTCTGCTGATAATTGGAGTTTCAGCTCAGATGGAGGAACCTCAACTTCGAAGCATCTCTAGAAGAAGAGAAAGATTCACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGACAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGT]
[+] EMBL CB669639 [CTCAATTCATAGAGTTAAATTTAGGAGTTGGAGCTCTACCAAACAGGCCTAAAATGTGATCTATCCTGTCTTAGTTAATGTGGAAATCCTTTGTAACACATGAATATACATTAGTTAATGTGGAATTAATGCTAGATTCTGTTTCAGGTTATTCAAAAATTTTATGATGTTCGTTGTAGAGACTCTGAATGCTCTGTGAACATTACTCTTGAAGAAAAATGTTCAGTTCTTCTGGACGATTCTGCTGATAATTGGAGTTTCAGCTCAGATGGAGGAACCTCAACTTCGAAGCATCTCTAGAAGAAGAGAAAGATTCACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGACAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11895#0 TCAGAAGAAGTTAGGTGGATGTTTAAGAGAGAACCAAAATTTGCAAGAGGAGCTTGCTGA 60
consensus_11895#1 ------------------------------------------------------------
consensus_11895#0 GGCTTATAGAATTAAAAGTCAGCTTGCTGAATTACATGGGGCTGAGCTATCAAAGAACAA 120
consensus_11895#1 ------------------------------------------------------------
consensus_11895#0 GGAACTAGAGAAGCAAGTAAGGTTTTTCCAAAGCAGCGTTGCTCAAGCATTTGCTGAACG 180
consensus_11895#1 ------------------------------------------------------------
consensus_11895#0 AGACAATTCGTTAATGAAGTGTGAGAAAGCAAAGGAGCGAGAAGAAGCAATTTTACAAAA 240
consensus_11895#1 -----------------------CTCAATTCATAGAGTTAAATTTAGGAGTT----GGAG 33
** * *** * * ** * ** *
consensus_11895#0 GTTTGCCAAATTCGAGGAAAGGACAAGAGAATATCAATCATCAATTGATGATCAGAAACG 300
consensus_11895#1 CTCTACCAAACAGGCCTAAAATGTGA---TCTATCCTGTCTTAGTTAATGTGGAAATCCT 90
* * ***** * *** * **** * * ** *** * * *
consensus_11895#0 GTCAAACGATGCCTTACAAATGGAGCTGATGAGGCTTAAAGAGCAGACACAATCTTCCTT 360
consensus_11895#1 TTGTAACACATGAATATACATT-AGTTAATGTGGAATTAATGCTAGATTCTGTTTC---- 145
* *** ** * ** ** * *** ** * ** *** * * *
consensus_11895#0 GAAAGTTATTCAAAAATTTTATGATGTTCGTTGTAGAGACTCTGAATGCTCTGTGAACAT 420
consensus_11895#1 --AGGTTATTCAAAAATTTTATGATGTTCGTTGTAGAGACTCTGAATGCTCTGTGAACAT 203
* ********************************************************
consensus_11895#0 TACTCTTGAAGAAAAATGTTCAGTTCTTCTGGACGATTCTGCTGATAATTGGAGTTTCAG 480
consensus_11895#1 TACTCTTGAAGAAAAATGTTCAGTTCTTCTGGACGATTCTGCTGATAATTGGAGTTTCAG 263
************************************************************
consensus_11895#0 CTCAGATGGAGGAACCTCAACTTCGAAGTACATTGCATCTCTAGAAGAAGAGAAAGATTC 540
consensus_11895#1 CTCAGATGGAGGAACCTCAACTTCGAAG-------CATCTCTAGAAGAAGAGAAAGATTC 316
**************************** *************************
consensus_11895#0 ACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCA 600
consensus_11895#1 ACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCA 376
************************************************************
consensus_11895#0 ACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTAT 660
consensus_11895#1 ACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTAT 436
************************************************************
consensus_11895#0 GAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAA 720
consensus_11895#1 GAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAA 496
************************************************************
consensus_11895#0 AATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTT 780
consensus_11895#1 AATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTT 556
************************************************************
consensus_11895#0 AAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGAGAGATGCAATGCTG 840
consensus_11895#1 AAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGACAGATGCAATGCTG 616
********************************************** *************
consensus_11895#0 TGACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGCCCTAA 900
consensus_11895#1 TGACAGCAGTTGTAAAGATGTACATGT--------------------------------- 643
***************************
consensus_11895#0 GGGGGACATTCCTTCTGATTGTGCAACATTTGGTGAATCGGATGTGCTTGTGCAAGCTTT 960
consensus_11895#1 ------------------------------------------------------------
consensus_11895#0 GCATGAGAAGATGGAGGCACTTATGCTCTTCTCACAGGAACAAGAAAGATACCTATTGGA 1020
consensus_11895#1 ------------------------------------------------------------
consensus_11895#0 GAAGCAGAGAAACCAAATTGTCATCGAGGAACTTCAGAAGAACTTATCTCAAGTAAAAGA 1080
consensus_11895#1 ------------------------------------------------------------
consensus_11895#0 GGAAAAGGTTAAAATCTTGGTAGAATTAGCAAAACTTAAAGAAGAATATCTGATGTTGAA 1140
consensus_11895#1 ------------------------------------------------------------
consensus_11895#0 AGGAAATTCAACACCAAAGGATGGTCATGGGGCTGTTGATAATATGAAAATCATTCCTGC 1200
consensus_11895#1 ------------------------------------------------------------
consensus_11895#0 ACATGATCGACAAGGGATGTTTAAAACTATCATGAATAGAACATCTCTAAGACATTGGAT 1260
consensus_11895#1 ------------------------------------------------------------
consensus_11895#0 AAAAAAAGAAAACACTAATATTGGGCATGAGTGCTCTGATGAAAACGTTCATACAGTCAG 1320
consensus_11895#1 ------------------------------------------------------------
consensus_11895#0 GAAACATCACTCAGAGGATCT 1341
consensus_11895#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||