These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11895#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1341 fasta sequence [TCAGAAGAAGTTAGGTGGATGTTTAAGAGAGAACCAAAATTTGCAAGAGGAGCTTGCTGAGGCTTATAGAATTAAAAGTCAGCTTGCTGAATTACATGGGGCTGAGCTATCAAAGAACAAGGAACTAGAGAAGCAAGTAAGGTTTTTCCAAAGCAGCGTTGCTCAAGCATTTGCTGAACGAGACAATTCGTTAATGAAGTGTGAGAAAGCAAAGGAGCGAGAAGAAGCAATTTTACAAAAGTTTGCCAAATTCGAGGAAAGGACAAGAGAATATCAATCATCAATTGATGATCAGAAACGGTCAAACGATGCCTTACAAATGGAGCTGATGAGGCTTAAAGAGCAGACACAATCTTCCTTGAAAGTTATTCAAAAATTTTATGATGTTCGTTGTAGAGACTCTGAATGCTCTGTGAACATTACTCTTGAAGAAAAATGTTCAGTTCTTCTGGACGATTCTGCTGATAATTGGAGTTTCAGCTCAGATGGAGGAACCTCAACTTCGAAGTACATTGCATCTCTAGAAGAAGAGAAAGATTCACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGAGAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGCCCTAAGGGGGACATTCCTTCTGATTGTGCAACATTTGGTGAATCGGATGTGCTTGTGCAAGCTTTGCATGAGAAGATGGAGGCACTTATGCTCTTCTCACAGGAACAAGAAAGATACCTATTGGAGAAGCAGAGAAACCAAATTGTCATCGAGGAACTTCAGAAGAACTTATCTCAAGTAAAAGAGGAAAAGGTTAAAATCTTGGTAGAATTAGCAAAACTTAAAGAAGAATATCTGATGTTGAAAGGAAATTCAACACCAAAGGATGGTCATGGGGCTGTTGATAATATGAAAATCATTCCTGCACATGATCGACAAGGGATGTTTAAAACTATCATGAATAGAACATCTCTAAGACATTGGATAAAAAAAGAAAACACTAATATTGGGCATGAGTGCTCTGATGAAAACGTTCATACAGTCAGGAAACATCACTCAGAGGATCT] [+] EMBL C72913 [TCAGAAGAAGTTAGGTGGATGTTTAAGAGAGAACCAAAATTTGCAAGAGGAGCTTGCTGAGGCTTATAGAATTAAAAGTCAGCTTGCTGAATTACATGGGGCTGAGCTATCAAAGAACAAGGAACTAGAGAAGCAAGTAAGGTTTTTCCAAAGCAGCGTTGCTCAAGCATTTGCTGAACGAGACAATTCGTTAATGAAGTGTGAGAAAGCAAAGGAGCGAGAAGAAGCAATTTTACAAAAGTTTGCCAAATTCGAGGAAAGGACAAGAGAATATCAATCATCAATTGATGATCAGAAACGGTCAAACGATGCCTTACAAATGGAGCTGATGAGGCTTAAAGAGCAGACACAATCTTCCTTGAAAGTTATTCAAAAATTTTATGATGTCCGTTGTAG GGCTCTGAATGCTCTGTGAACATTACTCTTGAGGAAAtggtcca ] [+] EMBL CB642423 [ AGCAATTTTACAAAAGTTTGCCAAATTCGAGGAAAGGACAAGAGAATATCAATCATCAATTGATGATCAGAAACGGTCAAACGATGCCTTACAAATGGAGCTGATGAGGCTTAAAGAGCAGACACAATCTTCCTTGAAAGTTATTCAAAAATTTTATGATGTTCGTTGTAGAGACTCTGAATGCTCTGTGAACATTACTCTTGAAGAAAAATGTTCAGTTCTTCTGGACGATTCTGCTGATAATTGGAGTTTCAGCTCAGATGGAGGAACCTCAACTTCGAAGTACATTGCATCTCTAGAAGAAGAGAAAGATTCACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGAGAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGCCCTAAGGGGGACATTCCTTCTGATTGTGCAACATTTGGTGAATCGGATGTGCTTGTGNCAGCTTTGCATGAGAAGATGGAGGCACTTATGCTCTTCTCACAGGAAACAGAAAGATACCTATTGGAGAAGCAGAGAAACC ] [+] EMBL CB642382 [ AGCAATTTTACAAAAGTTTGCCAAATTCGAGGAAAGGACAAGAGAATATCAATCATCAATTGATGATCAGAAACGGTCAAACGATGCCTTACAAATGGAGCTGATGAGGCTTAAAGAGCAGACACAATCTTCCTTGAAAGTTATTCAAAAATTTTATGATGTTCGTTGTAGAGACTCTGAATGCTCTGTGAACATTACTCTTGAAGAAAAATGTTCAGTTCTTCTGGACGATTCTGCTGATAATTGGAGTTTCAGCTCAGATGGAGGAACCTCAACTTCGAAGTACATTGCATCTCTAGAAGAAGAGAAAGATTCACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGAGAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGCCCTAAGGGGGACATTCCTTCTGATTGTGCAACATTTGGTGAATCGGATGTGCTTGTGCAAGCTTTGCATGAGAAGATGGAGGCACTTATGCTCTTCTCACAGGAAACAGAAAGATACCTA ] [+] EMBL CB648743 [ GCAGACCCTTTCTTCCTTGAAAGTTATTCAAAAATTTTATGATGTTCGTTGTAGAGACTCTGAATGCTCTGTGAACATTACTCTTGAAGAAAAATGTTCAGTTCTTCTGGACGATTCTGCTGATAATTGGAGTTTCAGCTCAGATGGAGGAACCTCAACTTCGAA GCATCTCTAGAAGAAGAGAAAGATTCACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGAGAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGCCCTAAGGGGGACATTCCTTCTGATTGTGCAACATTTGGTGAATCGGATGTGCTTGTGCAAGCTTTGCATGAGAAGATGGAGGCACTTATGCTCTTCTCACAGGAACAAGAAAGATACCTATTGGAGAAGCAGAGAAACCAAATTGTCATCGAGGAACTTCAGAAGAACTTATCTCAAGTANAAGAGGAAAAGGGTAAAATCTTGGTAGAATTAGCAAAACTTAAAAAAGAATA ] [+] EMBL CB618486 [ CAGCTCCCTTGGAGGAACCTCAACTTCGAA GCATCTCTAGAAGAAGAGAAAGATTCACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTGTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAACCAATGAAAACCCTGTTGGAGAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGCCCTAAGGGGGACATTCCTTCTGATTGTGCAACATTTGGTGAATCGGATGTGCTTGTGCAAGCTTTGCATGAGAAGATGGAGGCACTTATGCTCTTCTCACAGGAACAAGAAAGATACCTATTGGAGAAGCAGAGAAACCAAATTGTCATCGAGGAACTTCAGAAGAACTTATCTCAAGTAAAAGAGGAAAAGGTTAAAATCTTGGTAGAATTAGCAAAACTTAAAGAAGAATATCTGATGTTGAAAGGAAATTCAACACCAAAGGATGGTCATGGGGCTGTTGATAATATGAAAATCATTCCTGCACATGATCGACAAGGGATGTTTAAAACTATCATGAATAGAACATCTCTAAGACATTGGATAAAAAAAGAAAACACTAATATTGGGCATGAGTGCTCTGATGAA ] [+] EMBL CB685108 [ ATCTCCTTAAGAAGAGAAAGATTCACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGAGAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGCCCTAAGGGGGACATTCCTTCTGATTGTGCAACATTTGGTGAATCGGATGTGCTTGTGCAAGCTTTGCATGAGAAGATGGAGGCACTTATGCTCTTCTCACAGGAACAAGAAAGATACCTATTGGAGAAGCAGAGAAACCAAATTGTCATCGAGGAACTTCAGAAGAACTTATCTCAAGTAAAAGAGGAAAAGGTTAAAATCTTGGTAGAATTAGCAAAACTTAAAGAAGAATATCTGATGTTGAAAGGAAATTCAACACCAAAGGATGGTCATGGGGCTGTTGATAATATGAAAATCATTCCTGCACATGATCGACAAGGGATGTTTAAAACTATCATGAATAG ] [+] EMBL OSC107411 [ AAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGAGAGATGCAATGCTGTNACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGC ] [+] EMBL CB648027 [ ATGAAAACCCTGTTGGAGAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGCCCTAAGGGGGACATTCCTTCTGATTGTGCAACATTTGGTGAATCGGATGTGCTTGTGCAAGCTTTGCATGAGAAGATGGAGGCACTTATGCTCTTCTCACAGGAACAAGAAAGATACCTATTGGAGAAGCAGAGAAACCAAATTGTCATCGAGGAACTTCAGAAGAACTTATCTCAAGTAAAAGAGGAAAAGGTTAAAATCTTGGTAGAATTAGCAAAACTTAAAGAAGAATATCTGATGTTGAAAGGAAATTCAACACCAAAGGATGGTCATGGGGCTGTTGATAATATGAAAATCATTCCTGCACATGATCGACAAGGGATGTTTAAAACTATCATGAATAGAACATCTCTAAGACATTGGATAAAAAAAGAAAACACTAATATTGGGCATGAGTGCTCTGATGAAAACGTTCATACAGTCAGGAAACATCACTCAGAGGATCT] consensusID : consensus_11895#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [CTCAATTCATAGAGTTAAATTTAGGAGTTGGAGCTCTACCAAACAGGCCTAAAATGTGATCTATCCTGTCTTAGTTAATGTGGAAATCCTTTGTAACACATGAATATACATTAGTTAATGTGGAATTAATGCTAGATTCTGTTTCAGGTTATTCAAAAATTTTATGATGTTCGTTGTAGAGACTCTGAATGCTCTGTGAACATTACTCTTGAAGAAAAATGTTCAGTTCTTCTGGACGATTCTGCTGATAATTGGAGTTTCAGCTCAGATGGAGGAACCTCAACTTCGAAGCATCTCTAGAAGAAGAGAAAGATTCACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGACAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGT] [+] EMBL CB669639 [CTCAATTCATAGAGTTAAATTTAGGAGTTGGAGCTCTACCAAACAGGCCTAAAATGTGATCTATCCTGTCTTAGTTAATGTGGAAATCCTTTGTAACACATGAATATACATTAGTTAATGTGGAATTAATGCTAGATTCTGTTTCAGGTTATTCAAAAATTTTATGATGTTCGTTGTAGAGACTCTGAATGCTCTGTGAACATTACTCTTGAAGAAAAATGTTCAGTTCTTCTGGACGATTCTGCTGATAATTGGAGTTTCAGCTCAGATGGAGGAACCTCAACTTCGAAGCATCTCTAGAAGAAGAGAAAGATTCACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCAACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTATGAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAAAATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTTAAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGACAGATGCAATGCTGTGACAGCAGTTGTAAAGATGTACATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11895#0 TCAGAAGAAGTTAGGTGGATGTTTAAGAGAGAACCAAAATTTGCAAGAGGAGCTTGCTGA 60 consensus_11895#1 ------------------------------------------------------------ consensus_11895#0 GGCTTATAGAATTAAAAGTCAGCTTGCTGAATTACATGGGGCTGAGCTATCAAAGAACAA 120 consensus_11895#1 ------------------------------------------------------------ consensus_11895#0 GGAACTAGAGAAGCAAGTAAGGTTTTTCCAAAGCAGCGTTGCTCAAGCATTTGCTGAACG 180 consensus_11895#1 ------------------------------------------------------------ consensus_11895#0 AGACAATTCGTTAATGAAGTGTGAGAAAGCAAAGGAGCGAGAAGAAGCAATTTTACAAAA 240 consensus_11895#1 -----------------------CTCAATTCATAGAGTTAAATTTAGGAGTT----GGAG 33 ** * *** * * ** * ** * consensus_11895#0 GTTTGCCAAATTCGAGGAAAGGACAAGAGAATATCAATCATCAATTGATGATCAGAAACG 300 consensus_11895#1 CTCTACCAAACAGGCCTAAAATGTGA---TCTATCCTGTCTTAGTTAATGTGGAAATCCT 90 * * ***** * *** * **** * * ** *** * * * consensus_11895#0 GTCAAACGATGCCTTACAAATGGAGCTGATGAGGCTTAAAGAGCAGACACAATCTTCCTT 360 consensus_11895#1 TTGTAACACATGAATATACATT-AGTTAATGTGGAATTAATGCTAGATTCTGTTTC---- 145 * *** ** * ** ** * *** ** * ** *** * * * consensus_11895#0 GAAAGTTATTCAAAAATTTTATGATGTTCGTTGTAGAGACTCTGAATGCTCTGTGAACAT 420 consensus_11895#1 --AGGTTATTCAAAAATTTTATGATGTTCGTTGTAGAGACTCTGAATGCTCTGTGAACAT 203 * ******************************************************** consensus_11895#0 TACTCTTGAAGAAAAATGTTCAGTTCTTCTGGACGATTCTGCTGATAATTGGAGTTTCAG 480 consensus_11895#1 TACTCTTGAAGAAAAATGTTCAGTTCTTCTGGACGATTCTGCTGATAATTGGAGTTTCAG 263 ************************************************************ consensus_11895#0 CTCAGATGGAGGAACCTCAACTTCGAAGTACATTGCATCTCTAGAAGAAGAGAAAGATTC 540 consensus_11895#1 CTCAGATGGAGGAACCTCAACTTCGAAG-------CATCTCTAGAAGAAGAGAAAGATTC 316 **************************** ************************* consensus_11895#0 ACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCA 600 consensus_11895#1 ACTGAGAGCTAAAATAGCTAAGCTTCAAAACAATCTAAGAATGGGCCTTGAAATTGAGCA 376 ************************************************************ consensus_11895#0 ACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTAT 660 consensus_11895#1 ACATTTGCAAAGAAATGCACGAGTATTAGAGAAAAGACAGGCACTCTATGATGAGTTTAT 436 ************************************************************ consensus_11895#0 GAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAA 720 consensus_11895#1 GAGAAATGGCCTTTCAACTCTTCAAAAGTTGCATATACAACAAAGGGATGACATTATGAA 496 ************************************************************ consensus_11895#0 AATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTT 780 consensus_11895#1 AATATTGGAAGAAGAATCATCTCAGTTGAGCACTGTTGTTAATGAGATTCAAGATAAGTT 556 ************************************************************ consensus_11895#0 AAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGAGAGATGCAATGCTG 840 consensus_11895#1 AAGTAAAATTCGTATCAACCCTGAAATCAATGAAAACCCTGTTGGACAGATGCAATGCTG 616 ********************************************** ************* consensus_11895#0 TGACAGCAGTTGTAAAGATGTACATGTTACTACAGATGTCAGCCCTGGCATCAGCCCTAA 900 consensus_11895#1 TGACAGCAGTTGTAAAGATGTACATGT--------------------------------- 643 *************************** consensus_11895#0 GGGGGACATTCCTTCTGATTGTGCAACATTTGGTGAATCGGATGTGCTTGTGCAAGCTTT 960 consensus_11895#1 ------------------------------------------------------------ consensus_11895#0 GCATGAGAAGATGGAGGCACTTATGCTCTTCTCACAGGAACAAGAAAGATACCTATTGGA 1020 consensus_11895#1 ------------------------------------------------------------ consensus_11895#0 GAAGCAGAGAAACCAAATTGTCATCGAGGAACTTCAGAAGAACTTATCTCAAGTAAAAGA 1080 consensus_11895#1 ------------------------------------------------------------ consensus_11895#0 GGAAAAGGTTAAAATCTTGGTAGAATTAGCAAAACTTAAAGAAGAATATCTGATGTTGAA 1140 consensus_11895#1 ------------------------------------------------------------ consensus_11895#0 AGGAAATTCAACACCAAAGGATGGTCATGGGGCTGTTGATAATATGAAAATCATTCCTGC 1200 consensus_11895#1 ------------------------------------------------------------ consensus_11895#0 ACATGATCGACAAGGGATGTTTAAAACTATCATGAATAGAACATCTCTAAGACATTGGAT 1260 consensus_11895#1 ------------------------------------------------------------ consensus_11895#0 AAAAAAAGAAAACACTAATATTGGGCATGAGTGCTCTGATGAAAACGTTCATACAGTCAG 1320 consensus_11895#1 ------------------------------------------------------------ consensus_11895#0 GAAACATCACTCAGAGGATCT 1341 consensus_11895#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||