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Oryza sativa
cluster # 11899 cluster # 11899       Sequences # 9       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11899#0 length = 2711 sequences # 4  
 consensus_11899#1 length = 705 sequences # 3  
consensus_11899#2 length = 379 sequences # 2  
consensusID : consensus_11899#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2711
fasta sequence 
                              [GTTTGCTCACTTTGTCGCAGCATTTCAAGCTCTCCTAACCTCAGATAAATGATAGCCATTAGAACCCTAGAAGGATCATTATCATTATCCTGAAATAATTCCGGTGAAATTCCTGTGTTCCCAAATAGCAGAGCAAGATTTAATTTCTTGTTAATTATTTTTTAGAAGGAAAGGAGCATTGCGAGTTTTTGGCGCCAAGAAGCAAGAAAGGTCATGGACAGCAGCAAGCAGCAGCTCGCCGTTTGGCCGGTGTCCGCCGCCAAGAAGTACGCCGGCTTCGACGGCAAGGCGGCGGCGAGGGAGCGGTCGGGCCTCGCGAACGCGTCGTTCCGGGTGTACTACAGCCTCCGCGCCGGCGCCGTGCCGTTCCTGTGGGAGTCGTCGCCGGGAACGCCCAAGGCGGCCGCCGTCTCGTCGCCGGCGAGGGAGTCATCATCGGCGGCGCGTGGCGCTCTGCCGCCCATCTCGCCGCCGCCGTCGTACCAGTCGGTCGAGATGAAGAAGGGGGGGAGGTGCCGGCCGAGGTCGTCGTGGCCGGCGGCGGCGGCGGCGGGCGACATCGTGAGGGCGCTGCTCGGCATGCTCGGGCTCGGGAAGTGGCGCCGCCGCCGCCACCACCACCACCGGTCGTCGTCGACGCGACGGCGCTCCGCCTCGGTCTCCGAGCTGCCGCCGTTCGCATCGCTCCCGTATTGACACGTGTACAATCAGATTAATTAATTAATTACAACTTTATTATGGACGGATGATTAATCACGGATGTTGCATGTAAATTACGGAGGCGGATGCCACTTTGCTCTGTGATTATCTCCTAATCTCTCGGGTTTTCGCGTCGTTAATTAGCAGAGTCTGAGTCGGTTTAGCGCACGGTTATAAAACGAGTGGGCACATCGATTTGAAACGAGTCGCGTCGCCGCTGCGTTTCCGAAGAGAAGGCGCCGCTCAAGGGAGAAAGCGTAAAGCCGTTTCCCGCTTTAGTTCTCGCATCCGCGCTAACCCTCGCGGCTTCGTCGATGGTCGGCGGCGGCGGCGGCGGCGGCCACGGGGTCAGGACGCCGGCGAACTTCCCCCCGCGGCAGAAGGCTCGCCTCCCTCGCGGACCGGTTCATGAGAAGTCGTTGGAACAGCAAAAGAAGGGGCCAAGTTCATCCTCTCCTTCAGTTAGCAGTAACAAGTCCCCACTCCAATTGGCTGCAGCAATTGTTCAACCACAGAAACCGCTAGAGTCACCACAGCACATGGTTACACCGGTTCGACT-GCAAGAATCTCCAGGCCCAAGAACCATTCCATGCAGTTCTGGATCTGTAGGATCTGGTTCAGGAGCTGCCCCATTTGACATATGCATAAAAAGAGATGATAAGTGCTCCATCAAGTTAAGTCGTTCTTTACTGGAAATCAACAGAGAAAAAAGACGAGAAAGGGAGCAACTTTCCAAGGAGGCAGCTCCATTGCAATATTTGAGACCTGGGATGGTTCTGTTGAAAAAGTTCTTAAAGCATGATGATCAGGTTGACATTATCAGACGCTGCCAGAAACTTGGTATTGGCTCAGGAGGATTTTATACTCCTGGCTACAGAGATGGTGGTAAATTAAGTTTGCAGATGATGTGCTTAGGGAAGAACTGGGATCCAAATTCACGTTCATATGGAGATACACGTCCATTTGATGGTGCTCAACCACCAAGTATACCAGAAGTATTCAGTAAGATAGTTAAAGATGCCATCCAAGCTTCCAATGAATTTTTGAGACAAAAAGCCAGACCTGCCAATGATGTTGAAGAACTTCCTCCACTGTCACCAGATATCTGCCTTGTTAACTTCTATACCAGCAGTGGTAAGTTAGGTCTTCACCAGGTACGAAGATCCACAATCTTCAACGTTATACAATTATATTTCAAAGATTAGTATTACAAGTCTTCCTCAATAAATTACTCCAACAAAATCCTCACCTAGGTCAAAGCAGCTTTTCCTATGGTTATTTTCTTCAGAGTTTCTTGTACTTGCATTTGTATAGTATAATGCCTTCAATTCCTCTGCTTTTCAATTGAAATGTTTATATTGCTGTGATCCTCTTTGGTGATTACTAACTGGACTGTGTGAATGTATCATTTTTACAGGACAAAGATGAAACGAAACCCAGCCTTCATAAGGGATTGCCTGTTGTTTCATTTTCGCTAGGTGACACTGCAGAATTCTTGTATGGTGACGTGAACGATGTGGATAAAGCTTCAAAGGTTGATCTGGAATCTGGTGATGTTCTCATATTTGGTGGTAAATCAAGGCTCATATTCCATGGGGTTTCCAGAATCAAACCAAAAACAGCACCAAATTGGCTGACCGATGAAGCAAAACTTCGACCTGGGCGTCTGAACCTCACATTCAGGCAGCATTAGCTTGCCCCGTATTAGATGTAGAGGGAACCTTGTTCTGTTCTGTTGTAGTAGCTCAGTACCCACCCTATTAGCATGAGTTAGCTGGTAGTACATTCGATCTAACTACTGGAAAACTCGAGAAGGAGTCAGATCAAACTATGGAACATATATATATTTAGTGCAATTGATTTTCCTGTGATTATTATTTTTAGATATAATGGAAATCAATCCAGATTTGTGTTGTAGTTTGAAGAGGTGGCATTGCCAGATTTGTGTTCTAATGTAAATTCCTATCGTGACCACTCTTTCAAAATTAAAAGACAATATATACCAAGCCAAT]

[+] EMBL AK099739             [GTTTGCTCACTTTGTCGCAGCATTTCAAGCTCTCCTAACCTCAGATAAATGATAGCCATTAGAACCCTAGAAGGATCATTATCATTATCCTGAAATAATTCCGGTGAAATTCCTGTGTTCCCAAATAGCAGAGCAAGATTTAATTTCTTGTTAATTATTTTTTAGAAGGAAAGGAGCATTGCGAGTTTTTGGCGCCAAGAAGCAAGAAAGGTCATGGACAGCAGCAAGCAGCAGCTCGCCGTTTGGCCGGTGTCCGCCGCCAAGAAGTACGCCGGCTTCGACGGCAAGGCGGCGGCGAGGGAGCGGTCGGGCCTCGCGAACGCGTCGTTCCGGGTGTACTACAGCCTCCGCGCCGGCGCCGTGCCGTTCCTGTGGGAGTCGTCGCCGGGAACGCCCAAGGCGGCCGCCGTCTCGTCGCCGGCGAGGGAGTCATCATCGGCGGCGCGTGGCGCTCTGCCGCCCATCTCGCCGCCGCCGTCGTACCAGTCGGTCGAGATGAAGAAGGGGGGGAGGTGCCGGCCGAGGTCGTCGTGGCCGGCGGCGGCGGCGGCGGGCGACATCGTGAGGGCGCTGCTCGGCATGCTCGGGCTCGGGAAGTGGCGCCGCCGCCGCCACCACCACCACCGGTCGTCGTCGACGCGACGGCGCTCCGCCTCGGTCTCCGAGCTGCCGCCGTTCGCATCGCTCCCGTATTGACACGTGTACAATCAGATTAATTAATTAATTACAACTTTATTATGGACGGATGATTAATCACGGATGTTGCATGTAAATTACGGAGGCGGATGCCACTTTGCTCTGTGATTATCTCCTAATCTCTCGGGTTTTCGCGTCGTTAATTAGCAGAGTCTGAGTCGGTTTAGCGCACGGTTATAAAACGAGTGGGCACATCGATTTGAAACGAGTCGCGTCGCCGCTGCGTTTCCGAAGAGAAGGCGCCGCTCAAGGGAGAAAGCGTAAAGCCGTTTCCCGCTTTAGTTCTCGCATCCGCGCTAACCCTCGCGGCTTCGTCGATGGTCGGCGGCGGCGGCGGCGGCGGCCACGGGGTCAGGACGCCGGCGAACTTCCCCCCGCGGCAGAAGGCTCGCCTCCCTCGCGGACCGGTTCATGAGAAGTCGTTGGAACAGCAAAAGAAGGGGCCAAGTTCATCCTCTCCTTCAGTTAGCAGTAACAAGTCCCCACTCCAATTGGCTGCAGCAATTGTTCAACCACAGAAACCGCTAGAGTCACCACAGCACATGGTTACACCGGTTCGACT GCAAGAATCTCCAGGCCCAAGAACCATTCCATGCAGTTCTGGATCTGTAGGATCTGGTTCAGGAGCTGCCCCATTTGACATATGCATAAAAAGAGATGATAAGTGCTCCATCAAGTTAAGTCGTTCTTTACTGGAAATCAACAGAGAAAAAAGACGAGAAAGGGAGCAACTTTCCAAGGAGGCAGCTCCATTGCAATATTTGAGACCTGGGATGGTTCTGTTGAAAAAGTTCTTAAAGCATGATGATCAGGTTGACATTATCAGACGCTGCCAGAAACTTGGTATTGGCTCAGGAGGATTTTATACTCCTGGCTACAGAGATGGTGGTAAATTAAGTTTGCAGATGATGTGCTTAGGGAAGAACTGGGATCCAAATTCACGTTCATATGGAGATACACGTCCATTTGATGGTGCTCAACCACCAAGTATACCAGAAGTATTCAGTAAGATAGTTAAAGATGCCATCCAAGCTTCCAATGAATTTTTGAGACAAAAAGCCAGACCTGCCAATGATGTTGAAGAACTTCCTCCACTGTCACCAGATATCTGCCTTGTTAACTTCTATACCAGCAGTGGTAAGTTAGGTCTTCACCAGGTACGAAGATCCACAATCTTCAACGTTATACAATTATATTTCAAAGATTAGTATTACAAGTCTTCCTCAATAAATTACTCCAACAAAATCCTCACCTAGGTCAAAGCAGCTTTTCCTATGGTTATTTTCTTCAGAGTTTCTTGTACTTGCATTTGTATAGTATAATGCCTTCAATTCCTCTGCTTTTCAATTGAAATGTTTATATTGCTGTGATCCTCTTTGGTGATTACTAACTGGACTGTGTGAATGTATCATTTTTACAGGACAAAGATGAAACGAAACCCAGCCTTCATAAGGGATTGCCTGTTGTTTCATTTTCGCTAGGTGACACTGCAGAATTCTTGTATGGTGACGTGAACGATGTGGATAAAGCTTCAAAGGTTGATCTGGAATCTGGTGATGTTCTCATATTTGGTGGTAAATCAAGGCTCATATTCCATGGGGTTTCCAGAATCAAACCAAAAACAGCACCAAATTGGCTGACCGATGAAGCAAAACTTCGACCTGGGCGTCTGAACCTCACATTCAGGCAGCATTAGCTTGCCCCGTATTAGATGTAGAGGGAACCTTGTTCTGTTCTGTTGTAGTAGCTCAGTACCCACCCTATTAGCATGAGTTAGCTGGTAGTACATTCGATCTAACTACTGGAAAACTCGAGAAGGAGTCAGATCAAACTATGGAACATATATATATTTAGTGCAATTGATTTTCCTGTGATTATTATTTTTAGATATAATGGAAATCAATCCAGATTTGTGTTGTAGTTTGAAGAGGTGGCATTGCCAGATTTGTGTTCTAATGTAAATTCCTATCGTGACCACTCTTTCAAAATTAAAAGACAATATATACCAAGCCAAT]
[+] EMBL AU057137             [                      TTTCAAGCTCTCCTAACCTCAGATAAATGATAGCCATTAGAACCCTAGAAGGATCATTATCATTATCCTGAAATAATTCCGGTGAAATTCCTGTGTTCCCAAATAGCAGAGCAAGATTTAATTTCTTGTTAATTATTTTTTAGAAGGAAAGGAGCATTGCGAGTTTTTGGCGCCAAGAAGCAAGAAAGGTCATGGACAGCAGCAAGCAGCAGCTCGCCGTTTGGCCGGTGTCCGCCGCCAAGAAGTACGCCGGCTTCGACGGCAAGGCGGCGGCGAGGGAGCGGTCGGGCCTCGCGAACGCGTCGTTCCGGGTGTACTACAGCCTCCGCGCCGGCGCCGTGCCGTTCCTGTGGGAGTCGTCGCCGGGAACGCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU063988             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AAGGGAGAAAGCGTAAAGCCGTTTCCCGCTTTAGTTCTCGCATCCGCGCTAACCCTCGCGGCTTCGTCGATGGTCGGCGGCGGCGGCGGCGGCGGCCACGGGGTCAGGACGCCGGCGAACTTCCCCCCGCGGCAGAAGGCTCGCCTCCCTCGCGGACCGGTTCATGAGAAGTCGTTGGAACAGCAAAAGAAGGGGCCAAGTTCATCCTCTCCTTCAGTTAGCAGTAACAAGTCCCCACTCCAATTGGCTGCAGCAATTGTTCAACCACAGAAACCGCTAGAGTCACCACAGCACATGGTTACACCGGTTCGACTGGCAAGAATCTCCAGGCCCAAGAACCATTCCATGCAGTTCTGGATCTGTAGGATCTGGTTCAGGAGCTG CCCATTTGACATATGCATAAAAAGAGATGATAA NGCTCCATCAAGTTAAncgtct                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU063968             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AAGGGAGAAAGCGTAAAGCCGTTTCCCGCTTTAGTTCTCGCATCCGCGCTAACCCTCGCGGCTTCGTCGATGGTCGGCGGCGGCGGCGGCGGCGGCCACGGGGTCAGGACGCCGGCGAACTTCCCCCCGCGGCAGAAGGCTCGCCTCCCTCGCGGACCGGTTCATGAGAAGTCGTTGGAACAGCAAAAGAAGGGGCCAAGTTCATCCTCTCCTTCAGTTAGCAGTAACAAGTCCCCANTCCAATTGGCTGCAGCAATTGTTCAACCACAGAAACCGCTAGAGTCACCACAGCACATGGTTANACCGGTTCGANT GCAAGAATCTCCAGGCCCAAGAACCATTCCATGAAGTTCTGGATTTGTAAGATNTGGTTAAGGAGTGGCCCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]




>consensus_11899#0
GTTTGCTCACTTTGTCGCAGCATTTCAAGCTCTCCTAACCTCAGATAAATGATAGCCATT
AGAACCCTAGAAGGATCATTATCATTATCCTGAAATAATTCCGGTGAAATTCCTGTGTTC
CCAAATAGCAGAGCAAGATTTAATTTCTTGTTAATTATTTTTTAGAAGGAAAGGAGCATT
GCGAGTTTTTGGCGCCAAGAAGCAAGAAAGGTCATGGACAGCAGCAAGCAGCAGCTCGCC
GTTTGGCCGGTGTCCGCCGCCAAGAAGTACGCCGGCTTCGACGGCAAGGCGGCGGCGAGG
GAGCGGTCGGGCCTCGCGAACGCGTCGTTCCGGGTGTACTACAGCCTCCGCGCCGGCGCC
GTGCCGTTCCTGTGGGAGTCGTCGCCGGGAACGCCCAAGGCGGCCGCCGTCTCGTCGCCG
GCGAGGGAGTCATCATCGGCGGCGCGTGGCGCTCTGCCGCCCATCTCGCCGCCGCCGTCG
TACCAGTCGGTCGAGATGAAGAAGGGGGGGAGGTGCCGGCCGAGGTCGTCGTGGCCGGCG
GCGGCGGCGGCGGGCGACATCGTGAGGGCGCTGCTCGGCATGCTCGGGCTCGGGAAGTGG
CGCCGCCGCCGCCACCACCACCACCGGTCGTCGTCGACGCGACGGCGCTCCGCCTCGGTC
TCCGAGCTGCCGCCGTTCGCATCGCTCCCGTATTGACACGTGTACAATCAGATTAATTAA
TTAATTACAACTTTATTATGGACGGATGATTAATCACGGATGTTGCATGTAAATTACGGA
GGCGGATGCCACTTTGCTCTGTGATTATCTCCTAATCTCTCGGGTTTTCGCGTCGTTAAT
TAGCAGAGTCTGAGTCGGTTTAGCGCACGGTTATAAAACGAGTGGGCACATCGATTTGAA
ACGAGTCGCGTCGCCGCTGCGTTTCCGAAGAGAAGGCGCCGCTCAAGGGAGAAAGCGTAA
AGCCGTTTCCCGCTTTAGTTCTCGCATCCGCGCTAACCCTCGCGGCTTCGTCGATGGTCG
GCGGCGGCGGCGGCGGCGGCCACGGGGTCAGGACGCCGGCGAACTTCCCCCCGCGGCAGA
AGGCTCGCCTCCCTCGCGGACCGGTTCATGAGAAGTCGTTGGAACAGCAAAAGAAGGGGC
CAAGTTCATCCTCTCCTTCAGTTAGCAGTAACAAGTCCCCACTCCAATTGGCTGCAGCAA
TTGTTCAACCACAGAAACCGCTAGAGTCACCACAGCACATGGTTACACCGGTTCGACTGC
AAGAATCTCCAGGCCCAAGAACCATTCCATGCAGTTCTGGATCTGTAGGATCTGGTTCAG
GAGCTGCCCCATTTGACATATGCATAAAAAGAGATGATAAGTGCTCCATCAAGTTAAGTC
GTTCTTTACTGGAAATCAACAGAGAAAAAAGACGAGAAAGGGAGCAACTTTCCAAGGAGG
CAGCTCCATTGCAATATTTGAGACCTGGGATGGTTCTGTTGAAAAAGTTCTTAAAGCATG
ATGATCAGGTTGACATTATCAGACGCTGCCAGAAACTTGGTATTGGCTCAGGAGGATTTT
ATACTCCTGGCTACAGAGATGGTGGTAAATTAAGTTTGCAGATGATGTGCTTAGGGAAGA
ACTGGGATCCAAATTCACGTTCATATGGAGATACACGTCCATTTGATGGTGCTCAACCAC
CAAGTATACCAGAAGTATTCAGTAAGATAGTTAAAGATGCCATCCAAGCTTCCAATGAAT
TTTTGAGACAAAAAGCCAGACCTGCCAATGATGTTGAAGAACTTCCTCCACTGTCACCAG
ATATCTGCCTTGTTAACTTCTATACCAGCAGTGGTAAGTTAGGTCTTCACCAGGTACGAA
GATCCACAATCTTCAACGTTATACAATTATATTTCAAAGATTAGTATTACAAGTCTTCCT
CAATAAATTACTCCAACAAAATCCTCACCTAGGTCAAAGCAGCTTTTCCTATGGTTATTT
TCTTCAGAGTTTCTTGTACTTGCATTTGTATAGTATAATGCCTTCAATTCCTCTGCTTTT
CAATTGAAATGTTTATATTGCTGTGATCCTCTTTGGTGATTACTAACTGGACTGTGTGAA
TGTATCATTTTTACAGGACAAAGATGAAACGAAACCCAGCCTTCATAAGGGATTGCCTGT
TGTTTCATTTTCGCTAGGTGACACTGCAGAATTCTTGTATGGTGACGTGAACGATGTGGA
TAAAGCTTCAAAGGTTGATCTGGAATCTGGTGATGTTCTCATATTTGGTGGTAAATCAAG
GCTCATATTCCATGGGGTTTCCAGAATCAAACCAAAAACAGCACCAAATTGGCTGACCGA
TGAAGCAAAACTTCGACCTGGGCGTCTGAACCTCACATTCAGGCAGCATTAGCTTGCCCC
GTATTAGATGTAGAGGGAACCTTGTTCTGTTCTGTTGTAGTAGCTCAGTACCCACCCTAT
TAGCATGAGTTAGCTGGTAGTACATTCGATCTAACTACTGGAAAACTCGAGAAGGAGTCA
GATCAAACTATGGAACATATATATATTTAGTGCAATTGATTTTCCTGTGATTATTATTTT
TAGATATAATGGAAATCAATCCAGATTTGTGTTGTAGTTTGAAGAGGTGGCATTGCCAGA
TTTGTGTTCTAATGTAAATTCCTATCGTGACCACTCTTTCAAAATTAAAAGACAATATAT
ACCAAGCCAAT

consensusID : consensus_11899#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 705
fasta sequence 
                              [CCATTTGGATGGTGCTCAACCCACCAGGTATANCCAGGAAGTATTCCAGTAAGATAGTTAAAGATGCNATCCAAGCTTCCAATGAATTTTTGAGACCAAAAAGCCAGACCTGCCAATGATGTTGAAGAACTT-CCT-CCACTGTCACCAGAT-ATCTGCCTTGTTAACTTCTATA-CCAGCAGTGGTAAGTTAGGTCTTCACCAGGACAAAGATGAAACGAAACCCAGCCTTCAT-AAGGGATTGCCTGTTGTTTCATTTTCGCTAGGTGACACTGCAGAATTCTTGTATGGTGACGTGAACGATGTGGATAAAGCTTCAAAGGTTGATCTGGAATCTGGTGATGTTCTCATATTTGGTGGTAAATCAAGGCTCATATTCCATGGGGTTTCCAGAATCAAACCAAAAACAGCACCAAATTGGCTGACCGATGAAGCAAAACTTCGACCTGGGCGTCTGAACCTCACATTCAGGCAGCATTAGCTTGCCCCGTATTAGATGTAGAGGGAACCTTGTTCTGTTCTGTTGTAGTAGCTCAGTACCCACCCTATTAGCATGAGTTAGCTGGTAGTACATTCGATCTAACTACTGGAAAACTCGAGAAGGAGTCAGATCAAACTATGGAACATATATATATTTAGTGCAATTGATTTTCCTGTGATTATTATTTTTAGATATAATGGAAATCAATCCAGATTTGTGTTGTAAAAA]

[+] EMBL AU085928             [CCATTTGGATGGTGCTCAACCCACCAGGTATANCCAGGAAGTATTCCAGTAAGATAGTTAAAGATGCNATCCAAGCTTCCAATGAATTTTTGAGACCAAAAAGCCAGACCTGCCAATGATGTTGAAGAACTT CCT CCACTGTCACCAGAT ATCTGCCTTGTTAACTTCTATA CCAGCAGTGGTAAGTTAGGTCTTCACCAGGACAAAGATGAAACGAAACCCAGCCTTCAT AAGGGATTGCCTGTTGTTTCATTTTCGCTAGGTGACACTGCAGAATTCTTGTATGGTGACGTGAACGATGTGGATAAAGCTTCAAAGGTTGATCTGGAATCTGGTGATGTTCTCATATTTGGTGGTAAATCAAGGCTCATATTCCATGGGGTTTCCAGAATCAAACCAAAAACAGCACCAAATTGGCTGACCGATGAAGCAAAACTTCGACCTGGGCGTCTGAACCTCACATTCAGGCAGCATTAGCTTGCCCCGTATTAGATGTAGAGGGAACCTTGTTCTGTTCTGTTGTAGTAGCTCAGTACCCACCCTATTAGCATGAGTTAGCTGGTAGTACATTCGATCTAACTACTGGAAAACTCGAGAAGGAGTCAGATCAAACTATGGAACATATATATATTTAGTGCAATTGATTTTCCTGTGATTATTATTTTTAGATATAATGGAAATCAATCCAGATTTGTGTTGTAAAAA]
[+] EMBL AU094109             [                                                                                                                  AATNATGTTGAAGACCTTCCCTCCCACTGTCACCANATAATCTGCCNTGTTAACTTCTNTACCCAGCANTGGTAAGTTAGGTCTNCCCCAGGACAAAGATGAANCGAAACCCAGCCTTCATAAAGGGATTGCCTGTTGTTTCATTNTCGCTAGGTGACACTGCAGAATTCTTGTATGGTGACGTGAACGATGTGGATAAAGCTTCAAAGGTTGATCTGGAATCTGGTGATGTTCTCATATTTGGTGGTAAATCAAGGCTCATATTCCATGGGGTTNCCAGAATCAAACCAAAAACAGCACCAAATTGGCTGNCCGATGAAGCAAAACTTCGACCTGGGCGTCTGAACCTCACATTCAGGCAGCATTAGCTTNCCCCGTATTAGATGTAGAGGGAACCTTGTTCTGTTCTGTTGTAGTAGCTCAGTACCCACCCTATTAGCATGAGTTAGCTGGTAGTACATTCGATCTAACTACTGGAAAACTCGAGAAGGAGTCAGATCAAACTATGGAACATATATATATTTAGTGCAATTGATTTTCCTGTGATTATTATTTTTAGATATAATGGAAATCAATCCAGATTTGTGTTGTAAAAA]
[+] EMBL C26926               [                                                                                                                                                           CTGCCTTGTTAACTTCTATA CCAGCAGTGGTAAGTTAGGTCTTCACCAGGACAAAGATGAAACGAAACCCAGCCTTCAT AAGGGATTGCCTGTTGTTTCATTTTCGCTAGGTGACACTGCAGAATTCTTGTATGGTGACGTGAACGATGTGGATAAAGCTTCAAAGGTTGATCTGGAATCTGGTGATGTTCTCATATTTGGTGGTAAATCAAGGCTCATATTCCATGGGGTTTCCAGAATCAAACCAAAAACAGCACCAAATTGGCTGACCGATGAAGCAAAACTTCGACCTGGGCGTCTGAACCTCACATTCAGGCAGCATTAGCTTGCCCCGTATTAGATGTAGAGGG ACCTTGTTCTGTCCTGTTGTAGTAGCTCAGTACCC NCCTATTAGCATGAGTTAGCTGG                                                                                                                                               ]




>consensus_11899#1
CCATTTGGATGGTGCTCAACCCACCAGGTATANCCAGGAAGTATTCCAGTAAGATAGTTA
AAGATGCNATCCAAGCTTCCAATGAATTTTTGAGACCAAAAAGCCAGACCTGCCAATGAT
GTTGAAGAACTTCCTCCACTGTCACCAGATATCTGCCTTGTTAACTTCTATACCAGCAGT
GGTAAGTTAGGTCTTCACCAGGACAAAGATGAAACGAAACCCAGCCTTCATAAGGGATTG
CCTGTTGTTTCATTTTCGCTAGGTGACACTGCAGAATTCTTGTATGGTGACGTGAACGAT
GTGGATAAAGCTTCAAAGGTTGATCTGGAATCTGGTGATGTTCTCATATTTGGTGGTAAA
TCAAGGCTCATATTCCATGGGGTTTCCAGAATCAAACCAAAAACAGCACCAAATTGGCTG
ACCGATGAAGCAAAACTTCGACCTGGGCGTCTGAACCTCACATTCAGGCAGCATTAGCTT
GCCCCGTATTAGATGTAGAGGGAACCTTGTTCTGTTCTGTTGTAGTAGCTCAGTACCCAC
CCTATTAGCATGAGTTAGCTGGTAGTACATTCGATCTAACTACTGGAAAACTCGAGAAGG
AGTCAGATCAAACTATGGAACATATATATATTTAGTGCAATTGATTTTCCTGTGATTATT
ATTTTTAGATATAATGGAAATCAATCCAGATTTGTGTTGTAAAAA

consensusID : consensus_11899#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 379
fasta sequence 
                              [CAAGCTCTCCTAACCTCAGATAAATGA--TAGCCATTAGAACCCTAGAAGGATCAT-TAT-CATT-ATCCTGAAATAAT-TCCGGTGAAAT-TCCTGTGTTCCCAAATAGCAGAGCAAGATTTAAT-TTCTTGTT-AATT-AT-TTTTTAGAAGGAAAGGAGCATTGCGAGT-TT-TTGGCGCCAAGAAGCAAGAAAGGTCATGGACAGCAGCAAGCAGCAGCTCGCTGTTTGGCCGGTGTCCGCC-GCCAAGAAGTACGCCGGCTTCGACGGCAAGGCGGCGGCGGCGGCGGCGGCGAGGGAGCGGTCGGGCCTCGCGAACGCGTCGTT-CCGGGTGTACTACAGCCTCCGCGCCGGCGCCGTGCCGTTCCTGTGGGAGTCGTCGCCGGGAAC]

[-] EMBL CB965603             [CAAGCTCTCCTAACCTCAGATAAATGA  TAGCCATTAGAACCCTAGAAGGATCAT TAT CATT ATCCTGAAATAAT TCCGGTGAAAT TCCTGTGTTCCCAAATAGCAGAGCAAGATTTAAT TTCTTGTT AATT AT TTTTTAGAAGGAAAGGAGCATTGCGAGT TT TTGGCGCCAAGAAGCAAGAAAGGTCATGGACAGCAGCAAGCAGCAGCTCGCTGTTTGGCCGGTGTCCGCC GCCAAGAAGTACGCCGGCTTCGACGGCAAGGCGGCGGCGGCGGCGGCGGCGAGGGAGCGGTCGGGCCTCGCGAACGCGTCGTT CCGGGTGTACTACAGCCTCCGCGCCGGCGCCGTGCCGTTCCTGTGGGAGTCGTCGCCGGGAAC]
[-] EMBL CB965635             [  gcgTCTCCTATCCTCAGAGTAATGAGTTAGCCATTAGAACCCTAGAAGGAGCATGTATGCATTGATCCTGAAATAATGTCCGGTGAAATGTCCTGTGTTCCCAAATAGCAGAGCAAGATGTAATGTTCTTGTTGAATTGATGTTTTTAGAAGGAAAGGAGCATGGCGAGTGTTGTTGGCGCCAAGAAGCAAGAAAGGTCATGGACAGCAGCAAGCAGCAGCTCGCTGTTTGGCCGGTGTCCGCCAGCCAAGAAGTACGCCGGCTTCGACGGCAAGGCGGCGGCGGCGGCGGCGGCGAGGGAGCGGTCGGGCCTCGCGAACGCGTCGTTACCGGGTGTACTACAGCCTCCGCGCCGGCGCCGTGCCGTTCCTGTGGGAGTCGTCGCCGGGAAC]




>consensus_11899#2
CAAGCTCTCCTAACCTCAGATAAATGATAGCCATTAGAACCCTAGAAGGATCATTATCAT
TATCCTGAAATAATTCCGGTGAAATTCCTGTGTTCCCAAATAGCAGAGCAAGATTTAATT
TCTTGTTAATTATTTTTTAGAAGGAAAGGAGCATTGCGAGTTTTTGGCGCCAAGAAGCAA
GAAAGGTCATGGACAGCAGCAAGCAGCAGCTCGCTGTTTGGCCGGTGTCCGCCGCCAAGA
AGTACGCCGGCTTCGACGGCAAGGCGGCGGCGGCGGCGGCGGCGAGGGAGCGGTCGGGCC
TCGCGAACGCGTCGTTCCGGGTGTACTACAGCCTCCGCGCCGGCGCCGTGCCGTTCCTGT
GGGAGTCGTCGCCGGGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11899#0      ------------------------------------------------------------
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      CCATTTGGATGGTGCTCAACCCACCAGGTATANCCAGGAAGTATTCCAGTAAGATAGTTA 60
                                                                                   

consensus_11899#0      --------------GTTTGCTCACTTTGTCGCAGCATTTCAAGCTCTCCTAACCTCAGAT 46
consensus_11899#2      ---------------------------------------CAAGCTCTCCTAACCTCAGAT 21
consensus_11899#1      AAGATGCNATCCAAGCTTCCAATGAATTTTTGAGACCAAAAAGCCAGACCTGCCAATGAT 120
                                                               ****    *   **   ***

consensus_11899#0      AAATGATAGCCATTAGAACCCTAGAAGGATCATTATC--ATTA--TCCTGAAATAATTCC 102
consensus_11899#2      AAATGATAGCCATTAGAACCCTAGAAGGATCATTATC--ATTA--TCCTGAAATAATTCC 77
consensus_11899#1      GTTGAAGAACTTCCTCCACTGTCACCAGATATCTGCCTTGTTAACTTCTATACCAGCAGT 180
                            * * *       **  *     ***   *  *   ***  * **  *  *     

consensus_11899#0      GGTGAAATTCCTGTGTTCCCAAATAG---CAGAGCAAGATTTAATTTC---------TTG 150
consensus_11899#2      GGTGAAATTCCTGTGTTCCCAAATAG---CAGAGCAAGATTTAATTTC---------TTG 125
consensus_11899#1      GGTAAGTTAGGTCTTCACCAGGACAAAGATGAAACGAAACCCAGCCTTCATAAGGGATTG 240
                       *** *  *   * *   **   * *       * * * *   *   *          ***

consensus_11899#0      TTAATTATTTTTTAGAAGGAAAGGAGCATTGCGAGTTTTTGGCGCCAAGAAGCAAGAAAG 210
consensus_11899#2      TTAATTATTTTTTAGAAGGAAAGGAGCATTGCGAGTTTTTGGCGCCAAGAAGCAAGAAAG 185
consensus_11899#1      CCTGTTGTTTCATTTTCGCTAGGTGACACTGCAGAATTCTTGTATGGTGACGTGAACGAT 300
                           ** ***  *    *  * *   ** ***    ** * *      ** *  *   * 

consensus_11899#0      GTC-ATGGA----CAGCAGC-AAGCAGCAGCTCGCCGTTTGGCCGGTGTCCGCCGCCAAG 264
consensus_11899#2      GTC-ATGGA----CAGCAGC-AAGCAGCAGCTCGCTGTTTGGCCGGTGTCCGCCGCCAAG 239
consensus_11899#1      GTGGATAAAGCTTCAAAGGTTGATCTGGAATCTGGTGATGTTCTCATATTTGGTGGTAAA 360
                       **  **  *    **   *   * * * *    *  * *   *   * *  *  *  ** 

consensus_11899#0      AAGTACGCCGGCTTCGACGG------CAAGGCGGCGGCG------------AGGGAGCGG 306
consensus_11899#2      AAGTACGCCGGCTTCGACGG------CAAGGCGGCGGCGGCGGCGGCGGCGAGGGAGCGG 293
consensus_11899#1      TCAAGGCTCATATTCCATGGGGTTTCCAGAATCAAACCAAAAACAGCACCAAATTGGCTG 420
                               *   *** * **      **         *             *    ** *

consensus_11899#0      TCGGGCCTCGCGAACGCGTCGTTCCGGGTGTACTACAGCCTCCGCGCCGGCGCCGT--GC 364
consensus_11899#2      TCGGGCCTCGCGAACGCGTCGTTCCGGGTGTACTACAGCCTCCGCGCCGGCGCCGT--GC 351
consensus_11899#1      ACCGATGAAGCAAA-ACTTCGACCTGGGCGT-CTGAACCTCACATTCAGGCAGCATTAGC 478
                        * *     ** **  * ***  * *** ** **  * *   *   * ***  * *  **

consensus_11899#0      CGTTCCTGTGGGAGTCGTCGCCGGGAACGCCCAAGGCGGCCGCCGTCTCGTCGCCGGCGA 424
consensus_11899#2      CGTTCCTGTGGGAGTCGTCGCCGGGAAC-------------------------------- 379
consensus_11899#1      TTGCCCCGTATTAGATGTAGAGGGAACCTTGTTCTGTTCTGTTGTAGTAGCTCAGTACCC 538
                           ** **   **  ** *  ** * *                                

consensus_11899#0      GGGAGTCATCATCGGCGGCGCGTGGCGCTCTGCCGCCCATCTCGCCGCCGCCGTCGTACC 484
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ACCCTATTAGCATGAGTTAGCTGGTAGTACATTCGATCTAACTACTGGAAAACTCGAGAA 598
                                                                                   

consensus_11899#0      AGTCGGTCGAGATGAAGAAGGGGGGGAGGTGCCGGCCGAGGTCGTCGTGGCCGGCGGCGG 544
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      GGAGTCAGATCAAACTATGGAACATATATATATTTAGTGCAATTGATTTTCCTGTGATTA 658
                                                                                   

consensus_11899#0      CGGCGGCGGGCGACATCGTGAGGGCGCTGCTCGGCATGCTCGGGCTCGGGAAGTGGCGCC 604
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      TTATTTTTAGATATAATGGAAATCAATCCAGATTTGTGTTGTAAAAA------------- 705
                                                                                   

consensus_11899#0      GCCGCCGCCACCACCACCACCGGTCGTCGTCGACGCGACGGCGCTCCGCCTCGGTCTCCG 664
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      AGCTGCCGCCGTTCGCATCGCTCCCGTATTGACACGTGTACAATCAGATTAATTAATTAA 724
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      TTACAACTTTATTATGGACGGATGATTAATCACGGATGTTGCATGTAAATTACGGAGGCG 784
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      GATGCCACTTTGCTCTGTGATTATCTCCTAATCTCTCGGGTTTTCGCGTCGTTAATTAGC 844
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      AGAGTCTGAGTCGGTTTAGCGCACGGTTATAAAACGAGTGGGCACATCGATTTGAAACGA 904
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      GTCGCGTCGCCGCTGCGTTTCCGAAGAGAAGGCGCCGCTCAAGGGAGAAAGCGTAAAGCC 964
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      GTTTCCCGCTTTAGTTCTCGCATCCGCGCTAACCCTCGCGGCTTCGTCGATGGTCGGCGG 1024
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      CGGCGGCGGCGGCGGCCACGGGGTCAGGACGCCGGCGAACTTCCCCCCGCGGCAGAAGGC 1084
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      TCGCCTCCCTCGCGGACCGGTTCATGAGAAGTCGTTGGAACAGCAAAAGAAGGGGCCAAG 1144
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      TTCATCCTCTCCTTCAGTTAGCAGTAACAAGTCCCCACTCCAATTGGCTGCAGCAATTGT 1204
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      TCAACCACAGAAACCGCTAGAGTCACCACAGCACATGGTTACACCGGTTCGACTGCAAGA 1264
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      ATCTCCAGGCCCAAGAACCATTCCATGCAGTTCTGGATCTGTAGGATCTGGTTCAGGAGC 1324
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      TGCCCCATTTGACATATGCATAAAAAGAGATGATAAGTGCTCCATCAAGTTAAGTCGTTC 1384
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      TTTACTGGAAATCAACAGAGAAAAAAGACGAGAAAGGGAGCAACTTTCCAAGGAGGCAGC 1444
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      TCCATTGCAATATTTGAGACCTGGGATGGTTCTGTTGAAAAAGTTCTTAAAGCATGATGA 1504
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      TCAGGTTGACATTATCAGACGCTGCCAGAAACTTGGTATTGGCTCAGGAGGATTTTATAC 1564
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      TCCTGGCTACAGAGATGGTGGTAAATTAAGTTTGCAGATGATGTGCTTAGGGAAGAACTG 1624
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      GGATCCAAATTCACGTTCATATGGAGATACACGTCCATTTGATGGTGCTCAACCACCAAG 1684
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      TATACCAGAAGTATTCAGTAAGATAGTTAAAGATGCCATCCAAGCTTCCAATGAATTTTT 1744
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      GAGACAAAAAGCCAGACCTGCCAATGATGTTGAAGAACTTCCTCCACTGTCACCAGATAT 1804
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      CTGCCTTGTTAACTTCTATACCAGCAGTGGTAAGTTAGGTCTTCACCAGGTACGAAGATC 1864
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      CACAATCTTCAACGTTATACAATTATATTTCAAAGATTAGTATTACAAGTCTTCCTCAAT 1924
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      AAATTACTCCAACAAAATCCTCACCTAGGTCAAAGCAGCTTTTCCTATGGTTATTTTCTT 1984
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      CAGAGTTTCTTGTACTTGCATTTGTATAGTATAATGCCTTCAATTCCTCTGCTTTTCAAT 2044
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      TGAAATGTTTATATTGCTGTGATCCTCTTTGGTGATTACTAACTGGACTGTGTGAATGTA 2104
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      TCATTTTTACAGGACAAAGATGAAACGAAACCCAGCCTTCATAAGGGATTGCCTGTTGTT 2164
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      TCATTTTCGCTAGGTGACACTGCAGAATTCTTGTATGGTGACGTGAACGATGTGGATAAA 2224
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      GCTTCAAAGGTTGATCTGGAATCTGGTGATGTTCTCATATTTGGTGGTAAATCAAGGCTC 2284
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      ATATTCCATGGGGTTTCCAGAATCAAACCAAAAACAGCACCAAATTGGCTGACCGATGAA 2344
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      GCAAAACTTCGACCTGGGCGTCTGAACCTCACATTCAGGCAGCATTAGCTTGCCCCGTAT 2404
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      TAGATGTAGAGGGAACCTTGTTCTGTTCTGTTGTAGTAGCTCAGTACCCACCCTATTAGC 2464
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      ATGAGTTAGCTGGTAGTACATTCGATCTAACTACTGGAAAACTCGAGAAGGAGTCAGATC 2524
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      AAACTATGGAACATATATATATTTAGTGCAATTGATTTTCCTGTGATTATTATTTTTAGA 2584
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      TATAATGGAAATCAATCCAGATTTGTGTTGTAGTTTGAAGAGGTGGCATTGCCAGATTTG 2644
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      TGTTCTAATGTAAATTCCTATCGTGACCACTCTTTCAAAATTAAAAGACAATATATACCA 2704
consensus_11899#2      ------------------------------------------------------------
consensus_11899#1      ------------------------------------------------------------
                                                                                   

consensus_11899#0      AGCCAAT 2711
consensus_11899#2      -------
consensus_11899#1      -------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)