These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1627 fasta sequence [CGTCAATCCCTATCTCCATTTGGATCTCTCCCTCTCGACTCCATGTTGCCGCCGCCGCCGCTGCGTTCCGTTGCGGCAAGCGGCGACGGGTGGCTCTCCCTCTCCGTCTCCACGGAGTCCACGGGGTCAGGAGAGAGCAACAAGCGCCTCAAGCGAGGCGGCGGCGGCGGATCGGTCGAGGACGATGGGTTCCCCCTCCACGACGAGGTCCTCCTCCTCGTGTTTGCGGCTAGCTCGCTGGATCTTCACGACCTCGTCCGGTGCACCGCCACTTGCAGGCGGTGGCGCCGCCTCGTCACCGGCAACGCGGAGTACATCTGCCGCTCCATGCTGCCCTCCAGCCGCCTCATCCGCGACCTCGCCGTCGGCTTCTTCCACCAGAGCCACGAGGACGAATCGTCTTCCTCTGTCGTGCCGCCTCGGTTCGTCCCGTTGCCCTCGGCCTCCTCCAGGTTCGGCGGCGGCGAGCTTGACAGGGTGCTCGACAACCCCGGCCTCTTCAAGAACTCCCGCCTCGTCGCATCACGGAAAGGCCGCCTCGTCGTCGAGCTCCGCCGCGCCTCCCGTGCCGCCGCCCTTAGGCTCGTCGTGTGCAACCCCATGACCGGTGACATGTCCGTCCTCCCCGTCCTCTCCGGGAAGGACAGGCCCGGGCTCTACGCGTGCGCGCTGCTCACCGCCGACGACCTTCAGGACTCCGCCGATCCGCTCCCACCGGGTCCCGCCGCCTTCCGCCTGGTGGTCCTCTACAAGCGCCGCAGCTTCACGGCGTGCCGGTCCTACTCGTCGGACACCAATGCCTGGAGCACCGAGCGCAAGCTATCCGGCGTCAAGATCGGCGGGAAGCGCCTGGGCGACATGGCCGCCGGTGTGACCTTCCGCGGCCGCGTGTTCTGGCTGGTGAACAGCGTGGTGTTCGTCCTCCACTTGGACACGCTGGTGGCGACCACCGAGAACATCTCATGGCATTGGAGGTGGAACGGCAAGCCATGCTTCTGCCTCGGTGACCCGGTGCCAAACCGCCGTCTCGCCGTCTCGCCGGACGGACGTCTCTGCGTGGTGCAGGTGGGTCGAAACTTGAGGACCTACAACCCGGTGATCAACGTCTTCGCTCGCCATGACAGTGGCGGCTGCAATGGGAGCACGGCGCAGAAGATCAGGTGGAAGGTGGAGGAGGGCACGACGTGGAGCTGAGCCACCTGATTCCATTGGCGAACGTGAAGAGGGTTTGTCTGAGGGGCGTCTGCGAGAAGAGCGGGCTCATCTTCCTCGCCATCGGCGCAGACATGTACGCCAAGAAACCGGACCTGGCGCTGTACGCGCTGGACATGGAGAAGAAGGAGGCGAGGCTGGTGCCGGCGCCCCCGGGCCGCTGCTGCGTTCGCCGGTCGTCGTGGAGCTTCTTCGGGTACGAGTTGGACCGTGTGGACTACCTCGCCTCCCTCGCCGGTGGCGATTCCACCGCTAGATGATGGAACAAGCATCCATCTCTGCACTGAGGTAAGGAGAAGAAATTTGGGTCAGATTTTACTGTTGTCACCTGCTGAAGACAGCACTGTAGCTCGTCGGAAAAAACCAAATCAGGCATTATGAAACATATTTTCATACATCTTAATTACATCATATT] [+] EMBL AK107248 [CGTCAATCCCTATCTCCATTTGGATCTCTCCCTCTCGACTCCATGTTGCCGCCGCCGCCGCTGCGTTCCGTTGCGGCAAGCGGCGACGGGTGGCTCTCCCTCTCCGTCTCCACGGAGTCCACGGGGTCAGGAGAGAGCAACAAGCGCCTCAAGCGAGGCGGCGGCGGCGGATCGGTCGAGGACGATGGGTTCCCCCTCCACGACGAGGTCCTCCTCCTCGTGTTTGCGGCTAGCTCGCTGGATCTTCACGACCTCGTCCGGTGCACCGCCACTTGCAGGCGGTGGCGCCGCCTCGTCACCGGCAACGCGGAGTACATCTGCCGCTCCATGCTGCCCTCCAGCCGCCTCATCCGCGACCTCGCCGTCGGCTTCTTCCACCAGAGCCACGAGGACGAATCGTCTTCCTCTGTCGTGCCGCCTCGGTTCGTCCCGTTGCCCTCGGCCTCCTCCAGGTTCGGCGGCGGCGAGCTTGACAGGGTGCTCGACAACCCCGGCCTCTTCAAGAACTCCCGCCTCGTCGCATCACGGAAAGGCCGCCTCGTCGTCGAGCTCCGCCGCGCCTCCCGTGCCGCCGCCCTTAGGCTCGTCGTGTGCAACCCCATGACCGGTGACATGTCCGTCCTCCCCGTCCTCTCCGGGAAGGACAGGCCCGGGCTCTACGCGTGCGCGCTGCTCACCGCCGACGACCTTCAGGACTCCGCCGATCCGCTCCCACCGGGTCCCGCCGCCTTCCGCCTGGTGGTCCTCTACAAGCGCCGCAGCTTCACGGCGTGCCGGTCCTACTCGTCGGACACCAATGCCTGGAGCACCGAGCGCAAGCTATCCGGCGTCAAGATCGGCGGGAAGCGCCTGGGCGACATGGCCGCCGGTGTGACCTTCCGCGGCCGCGTGTTCTGGCTGGTGAACAGCGTGGTGTTCGTCCTCCACTTGGACACGCTGGTGGCGACCACCGAGAACATCTCATGGCATTGGAGGTGGAACGGCAAGCCATGCTTCTGCCTCGGTGACCCGGTGCCAAACCGCCGTCTCGCCGTCTCGCCGGACGGACGTCTCTGCGTGGTGCAGGTGGGTCGAAACTTGAGGACCTACAACCCGGTGATCAACGTCTTCGCTCGCCATGACAGTGGCGGCTGCAATGGGAGCACGGCGCAGAAGATCAGGTGGAAGGTGGAGGAGGGCACGACGTGGAGCTGAGCCACCTGATTCCATTGGCGAACGTGAAGAGGGTTTGTCTGAGGGGCGTCTGCGAGAAGAGCGGGCTCATCTTCCTCGCCATCGGCGCAGACATGTACGCCAAGAAACCGGACCTGGCGCTGTACGCGCTGGACATGGAGAAGAAGGAGGCGAGGCTGGTGCCGGCGCCCCCGGGCCGCTGCTGCGTTCGCCGGTCGTCGTGGAGCTTCTTCGGGTACGAGTTGGACCGTGTGGACTACCTCGCCTCCCTCGCCGGTGGCGATTCCACCGCTAGATGATGGAACAAGCATCCATCTCTGCACTGAGGTAAGGAGAAGAAATTTGGGTCAGATTTTACTGTTGTCACCTGCTGAAGACAGCACTGTAGCTCGTCGGAAAAAACCAAATCAGGCATTATGAAACATATTTTCATACATCTTAATTACATCATATT] consensusID : consensus_119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1481 fasta sequence [GTCAATCGCGATCTCCCTTCTGTTATCCCCCTCTCGTCTCGATGTCATCGCCGCCGCCGCCGCCGCCGCCGTGTCCTGCTGCGGCGTGCGACGACGGGTGGCTCTCCCTGTCCGTCTCGACGGTGTCGGGAGAGAGCAATCAAAAGCGCCTCAAGCGAGGAGGCGGAGGAGGTGGTGGAGGGGTCGGCGGCGGAGCGGTCGAGGATGATGGGTGCCCCCTCCACGACGAGGTCCTCCTCCTCGTGTTCGCGGAATGTTCGCTGGAGACAGACGATCTCGTCCGGTGCGCCGCCACCACGGTTCATCCCGTTGCCCTCCTACTCCTCCAGGTTCGCCGGCGGAGGCGAGCTCGACAAGGTGTTCGACAGCGGCCTCTTGAGCAACTCCCGCCTCATCGCGTCGCGCAAGGGCCTCCTCGTCCTCGAGCTCCGCCGCTCCTCGCGCGCCGCGGCCGTCAGGCTCGTCGTGTGCAACCCCATGACCGGGGACATGGCCACCCTCCCCATCCTCGCCGGGAAGGACAGGCCCGGGCACTACGCGTGCGCGCTAATCACCTTCGACGACCACGAGGGCGCGCCGGATCGGCTCGGCTTCGTCCATGACCCCGCCGCGTTCCGCCTGCTCCTCGTCTACAAGCGCCGCAACTTCACGGCGTGCCGATCCTACTGGTCGGACACCAAGGCCTGGGATGCGGAGGGCAAGCTGTCCGGTGCCAAGATCGGCGGCAGGCGCCTCGGCGAGATGACCGGCGCGGTGGCCGTCCGCGGCTCCGTGTTCTGGCTGCTAAAGAACCTGCTGTTCGTCGTCCGCCTCGGCGCGCTGAAGGCTACCACCGAGACCTTCCCATCAAAATGGTGCAGCAAGCTCTGCTTCTGCTACGGCAGCCCGGTGCAGAACCGCCAGCTCGCCGTCACGCCGGACGGCCGGCTCTGCGCCGTGCAGGTGGACCGACACGTGACGAGCAACAACACCGTGAGGATCAACGTCATCTCCCGCCACGACGGCTACGGCCCGCCGACATGGGAGTGCGACAATGCGCGCGACGTGGAGCTCAACCGCGTGCTGCCCATGGCGAACGTGAGGAGGGTTTGCCTGAGGGGCGTGTGCGAGAGGAGCGGGGTCGTCTTCCTCGCCATCGGCACCGACTTGTACAACCAGCAGCCGGACCTGGCGCTCTACGCGCTGGACATGGACAAGAAGGAGGCACGGAAGGTGGCGGCGCCGCCGGGCCACTGCCGCCGGTTGTCGTCGAGCTTCTTCGGCTACGAGATGGACCGTGTGGCCTACCTCGCCTCCCTCTCCGGCGGGGAGTCCATTGCTAGCTGATTGGAACACCCGCAAAGTGAGGTAAGGAGAGGAATTTTGCTAAGATTTTACTGCTGCAAAGATTTTACTGCTGCAAACAGTTCTGTAGCTTGTCTGGAAAAAAGCACCAGGCATTACAAAACATAGTTGCATACACCATACTTTACAGTTTAGTA] [+] EMBL AK063471 [GTCAATCGCGATCTCCCTTCTGTTATCCCCCTCTCGTCTCGATGTCATCGCCGCCGCCGCCGCCGCCGCCGTGTCCTGCTGCGGCGTGCGACGACGGGTGGCTCTCCCTGTCCGTCTCGACGGTGTCGGGAGAGAGCAATCAAAAGCGCCTCAAGCGAGGAGGCGGAGGAGGTGGTGGAGGGGTCGGCGGCGGAGCGGTCGAGGATGATGGGTGCCCCCTCCACGACGAGGTCCTCCTCCTCGTGTTCGCGGAATGTTCGCTGGAGACAGACGATCTCGTCCGGTGCGCCGCCACCACGGTTCATCCCGTTGCCCTCCTACTCCTCCAGGTTCGCCGGCGGAGGCGAGCTCGACAAGGTGTTCGACAGCGGCCTCTTGAGCAACTCCCGCCTCATCGCGTCGCGCAAGGGCCTCCTCGTCCTCGAGCTCCGCCGCTCCTCGCGCGCCGCGGCCGTCAGGCTCGTCGTGTGCAACCCCATGACCGGGGACATGGCCACCCTCCCCATCCTCGCCGGGAAGGACAGGCCCGGGCACTACGCGTGCGCGCTAATCACCTTCGACGACCACGAGGGCGCGCCGGATCGGCTCGGCTTCGTCCATGACCCCGCCGCGTTCCGCCTGCTCCTCGTCTACAAGCGCCGCAACTTCACGGCGTGCCGATCCTACTGGTCGGACACCAAGGCCTGGGATGCGGAGGGCAAGCTGTCCGGTGCCAAGATCGGCGGCAGGCGCCTCGGCGAGATGACCGGCGCGGTGGCCGTCCGCGGCTCCGTGTTCTGGCTGCTAAAGAACCTGCTGTTCGTCGTCCGCCTCGGCGCGCTGAAGGCTACCACCGAGACCTTCCCATCAAAATGGTGCAGCAAGCTCTGCTTCTGCTACGGCAGCCCGGTGCAGAACCGCCAGCTCGCCGTCACGCCGGACGGCCGGCTCTGCGCCGTGCAGGTGGACCGACACGTGACGAGCAACAACACCGTGAGGATCAACGTCATCTCCCGCCACGACGGCTACGGCCCGCCGACATGGGAGTGCGACAATGCGCGCGACGTGGAGCTCAACCGCGTGCTGCCCATGGCGAACGTGAGGAGGGTTTGCCTGAGGGGCGTGTGCGAGAGGAGCGGGGTCGTCTTCCTCGCCATCGGCACCGACTTGTACAACCAGCAGCCGGACCTGGCGCTCTACGCGCTGGACATGGACAAGAAGGAGGCACGGAAGGTGGCGGCGCCGCCGGGCCACTGCCGCCGGTTGTCGTCGAGCTTCTTCGGCTACGAGATGGACCGTGTGGCCTACCTCGCCTCCCTCTCCGGCGGGGAGTCCATTGCTAGCTGATTGGAACACCCGCAAAGTGAGGTAAGGAGAGGAATTTTGCTAAGATTTTACTGCTGCAAAGATTTTACTGCTGCAAACAGTTCTGTAGCTTGTCTGGAAAAAAGCACCAGGCATTACAAAACATAGTTGCATACACCATACTTTACAGTTTAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_119#0 CGTCAATCCCTATCTCCATTTGGATCTCTCCCTCTCGACTCCATGTT---------GCCG 51 consensus_119#1 -GTCAATCGCGATCTCCCTTCTGTTATCCCCCTCTCGTCTCGATGTCATCGCCGCCGCCG 59 ******* * ****** ** * * ** ******** *** **** **** consensus_119#0 CCGCCGCCGCTGCGTTCCGTTGCGGCAAGCGGCGACGGGTGGCTCTCCCTCTCCGTCTCC 111 consensus_119#1 CCGCCGCCGCCGTGTCCTGCTGCGGCGTGCGACGACGGGTGGCTCTCCCTGTCCGTCTCG 119 ********** * ** * * ****** *** ****************** ******** consensus_119#0 ACGGAGTCCACGGGG-----TCAGGAGAG-----AGCAACAAG-CGCCTCAAGCG----A 156 consensus_119#1 ACGGTGTCGGGAGAGAGCAATCAAAAGCGCCTCAAGCGAGGAGGCGGAGGAGGTGGTGGA 179 **** *** * * *** ** * *** * ** ** * * * * consensus_119#0 GGCGGCGGCGGCGGATCGGTCGAGGACGATGGGTTCCCCCTCCACGACGAGGTCCTCCTC 216 consensus_119#1 GGGGTCGGCGGCGGAGCGGTCGAGGATGATGGGTGCCCCCTCCACGACGAGGTCCTCCTC 239 ** * ********** ********** ******* ************************* consensus_119#0 CTCGTGTTTGCGGCTAGCTCGCTGGATCTTCACGACCTCGTCCGGTGCACCGCCACTTGC 276 consensus_119#1 CTCGTGTTCGCGGAATGTTCGCTGGAGACAGACGATCTCGTCCGGTGCGCCGCCAC---- 295 ******** **** * ******** **** ************ ******* consensus_119#0 AGGCGGTGGCGCCGCCTCGTCACCGGCAACGCGGAGTACATCTGCCGCTCCATGCTGCCC 336 consensus_119#1 ------------------------------------------------------------ consensus_119#0 TCCAGCCGCCTCATCCGCGACCTCGCCGTCGGCTTCTTCCACCAGAGCCACGAGGACGAA 396 consensus_119#1 ------------------------------------------------------------ consensus_119#0 TCGTCTTCCTCTGTCGTGCCGCCTCGGTTCGTCCCGTTGCCCTCGGCCTCCTCCAGGTTC 456 consensus_119#1 ----------------------CACGGTTCATCCCGTTGCCCTCCTACTCCTCCAGGTTC 333 * ****** ************* ************* consensus_119#0 GGCGGCGG---CGAGCTTGACAGGGTGCTCGACAACCCCGGCCTCTTCAAGAACTCCCGC 513 consensus_119#1 GCCGGCGGAGGCGAGCTCGACAAGGTGTTCGACAG---CGGCCTCTTGAGCAACTCCCGC 390 * ****** ****** **** **** ****** ********* * ********* consensus_119#0 CTCGTCGCATCACGGAAAGGCCGCCTCGTCGTCGAGCTCCGCCGCGCCTCCCGTGCCGCC 573 consensus_119#1 CTCATCGCGTCGCGCAAGGGCCTCCTCGTCCTCGAGCTCCGCCGCTCCTCGCGCGCCGCG 450 *** **** ** ** ** **** ******* ************** **** ** ***** consensus_119#0 GCCCTTAGGCTCGTCGTGTGCAACCCCATGACCGGTGACATGTCCGTCCTCCCCGTCCTC 633 consensus_119#1 GCCGTCAGGCTCGTCGTGTGCAACCCCATGACCGGGGACATGGCCACCCTCCCCATCCTC 510 *** * ***************************** ****** ** ******* ***** consensus_119#0 TCCGGGAAGGACAGGCCCGGGCTCTACGCGTGCGCGCTGCTCACCGCCGACGACCTTCAG 693 consensus_119#1 GCCGGGAAGGACAGGCCCGGGCACTACGCGTGCGCGCTAATCACCTTCGACGACCACGAG 570 ********************* *************** ***** ******** ** consensus_119#0 GACTCCGCCGATCCGCTCC-CACCG-----GGTCCCGCCGCCTTCCGCCTGGTGGTCCTC 747 consensus_119#1 GGCGCGCCGGATCGGCTCGGCTTCGTCCATGACCCCGCCGCGTTCCGCCTGCTCCTCGTC 630 * * * * **** **** * ** * ******** ********* * ** ** consensus_119#0 TACAAGCGCCGCAGCTTCACGGCGTGCCGGTCCTACTCGTCGGACACCAATGCCTGGAGC 807 consensus_119#1 TACAAGCGCCGCAACTTCACGGCGTGCCGATCCTACTGGTCGGACACCAAGGCCTGGGAT 690 ************* *************** ******* ************ ****** consensus_119#0 ACCGAGCGCAAGCTATCCGGCGTCAAGATCGGCGGGAAGCGCCTGGGCGACATGGCCGCC 867 consensus_119#1 GCGGAGGGCAAGCTGTCCGGTGCCAAGATCGGCGGCAGGCGCCTCGGCGAGATGACCGGC 750 * *** ******* ***** * ************ * ****** ***** *** *** * consensus_119#0 GGTGTGACCTTCCGCGGCCGCGTGTTCTGGCTGGTGAACAGCGTGGTGTTCGTCCTCCAC 927 consensus_119#1 GCGGTGGCCGTCCGCGGCTCCGTGTTCTGGCTGCTAAAGAACCTGCTGTTCGTCGTCCGC 810 * *** ** ******** ************* * ** * * ** ******** *** * consensus_119#0 TTGGACACGCTGGTGGCGACCACCGAGAACATCTCATGGCATTGGAGGTGGAACGGCAAG 987 consensus_119#1 CTCGGCGCGCTGAAGGCTACCACCGAGACCTTCCCATC------AAAATGGTGCAGCAAG 864 * * * ***** *** ********** * ** *** * *** * ***** consensus_119#0 CCATGCTTCTGCCTCGGTGACCCGGTGCCAAACCGCCGTCTCGCCGTCTCGCCGGACGGA 1047 consensus_119#1 CTCTGCTTCTGCTACGGCAGCCCGGTGCAGAACCGCCAGCTCGCCGTCACGCCGGACGGC 924 * ********* *** ******** ******* ********* ********** consensus_119#0 CGTCTCTGCGTGGTGCAGGTGGGTCGAAACTTGAGGACCTACAACCCGGTGA---TCAAC 1104 consensus_119#1 CGGCTCTGCGCCGTGCAGGTGGACCGACACGTGACGAGCAACAACACCGTGAGGATCAAC 984 ** ******* ********** *** ** *** ** * ***** * **** ***** consensus_119#0 GTCTTCGCTCGCCATGACAGTGGCGGCTGCAATGGGAGCACGGCGCAGAAGATCAGGTGG 1164 consensus_119#1 GTCATCTCCCGCCACGACGGCTACGGCC---------------CGCCGA----CATG-GG 1024 *** ** * ***** *** * **** *** ** ** * ** consensus_119#0 AAGGTGGAGGAGGGCACGACGTGGAGCTGAGCCACCTGATTCCATTGGCGAACGTGAAGA 1224 consensus_119#1 AGTGCGACAATGCGCGCGACGTGGAGCTCAACCGCGTGCTGCCCATGGCGAACGTGAGGA 1084 * * * * ** ************ * ** * ** * ** ************ ** consensus_119#0 GGGTTTGTCTGAGGGGCGTCTGCGAGAAGAGCGGGCTCATCTTCCTCGCCATCGGCGCAG 1284 consensus_119#1 GGGTTTGCCTGAGGGGCGTGTGCGAGAGGAGCGGGGTCGTCTTCCTCGCCATCGGCACCG 1144 ******* *********** ******* ******* ** ***************** * * consensus_119#0 ACATGTACGCCAAGAAACCGGACCTGGCGCTGTACGCGCTGGACATGGAGAAGAAGGAGG 1344 consensus_119#1 ACTTGTACAACCAGCAGCCGGACCTGGCGCTCTACGCGCTGGACATGGACAAGAAGGAGG 1204 ** ***** * ** * ************** ***************** ********** consensus_119#0 CGAGGCTGGTGCCGGCGCCCCCGGGCCGCTGCTGCGTTCGCCGGTCGTCGTGGAGCTTCT 1404 consensus_119#1 CACGGAAGGTGGCGGCGCCGCCGGGCCACTGC------CGCCGGTTGTCGTCGAGCTTCT 1258 * ** **** ******* ******* **** ******* ***** ******** consensus_119#0 TCGGGTACGAGTTGGACCGTGTGGACTACCTCGCCTCCCTCGCCGGTGGCGATTCCACCG 1464 consensus_119#1 TCGGCTACGAGATGGACCGTGTGGCCTACCTCGCCTCCCTCTCCGGCGGGGAGTCCATTG 1318 **** ****** ************ **************** **** ** ** **** * consensus_119#0 CTAGATGATGGAACAAGCATCCATCTCTGCACTGAGGTAAGGAGAAGAAATTTGGGTCAG 1524 consensus_119#1 CTAGCTGATTGGAA-------CACCCGCAAAGTGAGGTAAGGAGAGGAATTTTGC-TAAG 1370 **** **** * * ** * * ************* *** **** * ** consensus_119#0 ATTTTACTGTTGTCAC-------CTGCTGAAGACAGCACTGTAGCTCGTCGGAAAAAACC 1577 consensus_119#1 ATTTTACTGCTGCAAAGATTTTACTGCTGCAAACAGTTCTGTAGCTTGTCTGGAAAAAA- 1429 ********* ** * ****** * **** ******** *** * ***** consensus_119#0 AAATCAGGCATTATGAAACATATTTTCATACATCTTAATT-ACATCATATT- 1627 consensus_119#1 GCACCAGGCATTACAAAACATAGTTGCATACACCATACTTTACAGTTTAGTA 1481 * ********* ******* ** ****** * ** ** *** ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||