These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1713 fasta sequence [GATCTCTCCACAACTCCCCCCCCCCCTCCAGCTCTCTCCAAAGTCCAAGTCTCTCTCGGTGCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCGCCCCCGCGCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGATTGTTGGGAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCTGGGGCGGCGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTTGATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCGCGGCGGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCAGAGTTTGGGCAAGACAAAGGTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTCATCCTTTTATTTATCATAGCAAAAGATTCTACACTGTCCTAATCTGGCGCCGGGTGCTAGCCTTTTTAGTTGCTTCGCAGGTTTTAAGAATCATTACGTTCTATTCCACCCAGCTTCCGGGCCCAAACTACCATTGTCGTGAGGGCTCAAAGTTGGCTACTCTTCCACCACCCAACAATGTATTTGAAGTGCTCCTGATTAACTTTCCTCGTGGAGTACTTTTTGGCTGCGGTGATCTGATATTTTCATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGTTCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATAATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTAGTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCTTTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGACTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGCGACAGCGCGCGCAGATGAACGGGAGGCACGATGAAGACATCAATCACGCCCACAGCACGCTCTCCGACGCTGCTGTCAATGGTGGTACATGAGCCGCGGCATCTGCTTTCCACCGGGAGTTTGTCTTCTCGCGTCGACCCCGAGGAGAATCCTCTGGGGGCGGATTGAGAACAACCGCCCGGTCCATCTGCATAGTGCATGCACATCCTGAACAAGATTCCAGCGGCAGAGGCAGCATTACACATGGTTTCCTTGTCGATTTCTGCTCATCCACCATCCTGGTACTATAGCATGATCGCAGATAAAACGAATGAAATGAATGGATGATTTGGTGCTCTAATCAATCGGGCGGTAGACGCTATTCAGGAATCAGGATCTTGGCCGCCGTAGTACGTTCTTCGGAGTCACTA-CTGTCGCTGTCCATAGTGGCCAGCTTAATCTTTCTGATCAAAAAAAAGA] [+] EMBL AK069695 [GATCTCTCCACAACTCCCCCCCCCCCTCCAGCTCTCTCCAAAGTCCAAGTCTCTCTCGGTGCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCGCCCCCGCGCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGATTGTTGGGAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCTGGGGCGGCGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTTGATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCGCGGCGGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCAGAGTTTGGGCAAGACAAAGGTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTCATCCTTTTATTTATCATAGCAAAAGATTCTACACTGTCCTAATCTGGCGCCGGGTGCTAGCCTTTTTAGTTGCTTCGCAGGTTTTAAGAATCATTACGTTCTATTCCACCCAGCTTCCGGGCCCAAACTACCATTGTCGTGAGGGCTCAAAGTTGGCTACTCTTCCACCACCCAACAATGTATTTGAAGTGCTCCTGATTAACTTTCCTCGTGGAGTACTTTTTGGCTGCGGTGATCTGATATTTTCATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGTTCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATAATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTAGTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCTTTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGACTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGCGACAGCGCGCGCAGATGAACGGGAGGCACGATGAAGACATCAATCACGCCCACAGCACGCTCTCCGACGCTGCTGTCAATGGTGGTACATGAGCCGCGGCATCTGCTTTCCACCGGGAGTTTGTCTTCTCGCGTCGACCCCGAGGAGAATCCTCTGGGGGCGGATTGAGAACAACCGCCCGGTCCATCTGCATAGTGCATGCACATCCTGAACAAGATTCCAGCGGCAGAGGCAGCATTACACATGGTTTCCTTGTCGATTTCTGCTCATCCACCATCCTGGTACTATAGCATGATCGCAGATAAAACGAATGAAATGAATGGATGATT ] [+] EMBL AK104063 [ TCCACAACTCCCCCCCCCCCTCCAGCTCTCTCCAAAGTCCAAGTCTCTCTCGGTGCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCGCCCCCGCGCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGATTGTTGGGAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCTGGGGCGGCGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTTGATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCGCGGCGGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCAGAGTTTGGGCAAGACAAAGGTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTCATCCTTTTATTTATCATAGCAAAAGATTCTACACTGTCCTAATCTGGCGCCGGGTGCTAGCCTTTTTAGTTGCTTCGCAGGTTTTAAGAATCATTACGTTCTATTCCACCCAGCTTCCGGGCCCAAACTACCATTGTCGTGAGGGCTCAAAGTTGGCTACTCTTCCACCACCCAACAATGTATTTGAAGTGCTCCTGATTAACTTTCCTCGTGGAGTACTTTTTGGCTGCGGTGATCTGATATTTTCATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGTTCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATAATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTAGTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCTTTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGACTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGCGACAGCGCGCGCAGATGAACGGGAGGCACGATGAAGACATCAATCACGCCCACAGCACGCTCTCCGACGCTGCTGTCAATGGTGGTACATGAGCCGCGGCATCTGCTTTCCACCGGGAGTTTGTCTTCTCGCGTCGACCCCGAGGAGAATCCTCTGGGGGCGGATTGAGAACAACCGCCCGGTCCATCTGCATAGTGCATGCACATCCTGAACAAGATTCCAGCGGCAGAGGCAGCATTACACATGGTTTCCTTGTCGATTTCTGCTCATCCACCATCCTGGTACTATAGCATGATCGCAGATAAAACGAATGAAATGAATGGATGATTTGGTGCTCTAATCAATCGGGCGGTAGACGCTA ] [+] EMBL CB649487 [ TGCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCGCCCCCGCGCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGATTGTTGGGAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCTGGGGCGGCGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTTGATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCGCGGCGGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCAGAGTTTGGGCAAGACAAAGGTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTCATCCTTTTATTTATCATAGCAAAAGATTCTACACTGTCCTAATCTGGCGCCGGGTGCTAGCCTTTTTAGTTGCTTCGCAGGTTTTAAGAATCATTACGTTCTATTCCACCCAGCTTCCGGGCCCAAACTACCATTGTCGTGAGGGCTCAAAGTTGGCTACTCTTCCACCACCCAACAATGTATTTGAAGTGCTCCTGATTAACTTTCCTCGTGGAGTACTTTTTGGCTGCNGTGATCTGAT ] [+] EMBL CA757349 [ ACCTTGGATTTATGGCCCTTCCAGAGCTTGGGCAAGACAAAGGTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTCATCCTTTTATTTATCATAGCAAAAGATTCTACACTGTCCTAATCTGGCGCCGGGTGCTAGCCTTTTTAGTTGCTTCGCAGGTTTTAAGAATCATTACGTTCTATTCCACCCAACTTCCGGGCCCAAACTACCATTGTCGTGAGGGCTCAAAGTTGGCTACTCTTCCACCACCCAACAATGTATTTGAAGTGCTCCTGATTAACTTTCCTCGTGGAGTACTTTTTGGCTGCGGTGATCTGATATTTTCATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGTTCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATAATTGCTTCTCGCANACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTAGTCGTATTCTTCGTGGAC ACANACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCTTTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGG ] [-] EMBL CB649488 [ GCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATAATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTAGTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCTTTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGACTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGCGACAGCGCGCGCAGATGAACGGGAGGCACGATGAAGACATCAATCACGCCCACAGCACGCTCTCCGACGCTGCTGTCAATGGTGGTACACGAGCCGCGGCATCTGCTTTCCACCGGGAGTTTGTCTTCTCGCGTCGACCCCGAGGAGAATCCTCTGGGGGCGGATTGAGAACAACCGCCCGGTCCATCTGCATAGTGCATGCACATCCTGAACAAGATTCCAGCGGCAGAGGCAGCATTACACATGGTTTCCTTGTCGATTTCTGCTCATCCACCATCCTGGTACTATAGCATGATCGCAGATAAAACGAATGAAATGAATGGATGATTTGGTGCTCTAATCAATCGGGCGGTAGACGCTATTCAGGAATCAGGATCTTGGCCGCCGTAGTACGTTCTTCGGAGTCACTAGCTGTCGCTGTCCATAGTGGCCAGCTTAATCTTTCTGATCAAAAAAAAGA] [+] EMBL AU057104 [ TACTATAGCATGATCGCAGATAAAACGAATGAAATGAATGGATGATTTGGTGCTCTAATCAATCGGGCGGTAGACGCTATTCAGGAATCAGGATCTTGGCCGCCGTAGTACGTTCTTCGGAGTCACTA NTGTCGCTGTACATAGTGGCCAGCTTAATCTTTCTGATCAAAAAAA ] consensusID : consensus_11903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1293 fasta sequence [ATCTCTCCACAACTCCCCCCCCCCCTCCAGCTCTCTCCAAAGTCCAAGTCTCTCTCGGTGCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCGCCCCCGCGCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGATTGTTGGGAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCTGGGGCGGCGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTTGATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCGCGGCGGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCAGAGTTTGGGCAAGACAAAGGTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTCATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGTTCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATAATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTAGTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCTTTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGACTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGGTATTGTAGAAGTCTTCTCCCTATATACTCCCTGAACAAGCCTAGCTTAGTACAGTCAGCCTGTCTATTAGATGAACTTGCCTATACTTTATACTATGCTGGATCCTACTTTCTCCGTCCCAAAATAAACAAACATATTATGAGATGCGATAACCTGCTCAGATCATTATACTAGAATACGTCACATCTCATGATTTGTTTATTGAGACGGAGCGAGTACTACTAAATTTGTTTACAACCCTTGCTAGTTTAATTACTCCCTCCATCCTAATAATATACTACCTCCGT] [+] EMBL AK063393 [ATCTCTCCACAACTCCCCCCCCCCCTCCAGCTCTCTCCAAAGTCCAAGTCTCTCTCGGTGCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCGCCCCCGCGCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGATTGTTGGGAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCTGGGGCGGCGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTTGATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCGCGGCGGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCAGAGTTTGGGCAAGACAAAGGTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTCATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGTTCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATAATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTAGTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCTTTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGACTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGGTATTGTAGAAGTCTTCTCCCTATATACTCCCTGAACAAGCCTAGCTTAGTACAGTCAGCCTGTCTATTAGATGAACTTGCCTATACTTTATACTATGCTGGATCCTACTTTCTCCGTCCCAAAATAAACAAACATATTATGAGATGCGATAACCTGCTCAGATCATTATACTAGAATACGTCACATCTCATGATTTGTTTATTGAGACGGAGCGAGTACTACTAAATTTGTTTACAACCCTTGCTAGTTTAATTACTCCCTCCATCCTAATAATATACTACCTCCGT] consensusID : consensus_11903#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [CGGATGCGGAGCCAGATTGATGGGAAACCAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGGGGGGTCTTTTACTCCTGGGGCGGTGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTTGATCGCGTCGCACTGTAGGAGCTGCAGCGGCCAGGGTGGGAGTGGGGGTGGCGCCGCAGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCCAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTTCACTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTTCTGCTGGACCTTGGATTTATGGCCCTTCCATGGACTTTTCGTCCTTTTATTTATCATAGCAAAAGATTCTACTCTGTCCTAATCTGGCGCCGGGTGCTAGCCTTTTTAGTTAGCTTCGCAGGTTTTAAGAATCATT] [+] EMBL CB642721 [CGGATGCGGAGCCAGATTGATGGGAAACCAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGGGGGGTCTTTTACTCCTGGGGCGGTGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTTGATCGCGTCGCACTGTAGGAGCTGCAGCGGCCAGGGTGGGAGTGGGGGTGGCGCCGCAGGGTGCGGCCATGACGATTTACATAGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACCACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCCAGAAGTGGGGATTGCTCCTCGCCGGAATTGTGTTTCACTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGACCTGGTCCACTTCTGCTGGACCTTGGATTTATGGCCCTTCCATGGACTTTTCGTCCTTTTATTTATCATAGCAAAAGATTCTACTCTGTCCTAATCTGGCGCCGGGTGCTAGCCTTTTTAGTTAGCTTCGCAGGTTTTAAGAATCATT] consensusID : consensus_11903#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence [GAGTTTCCCACTAAGCCTATTAAACCCGGAACACCCACTGGGGACTCCCTCACCTGATCCCGGTGTAATTGGTAAGGAAAAATGTTCCTTGCTCTCCCCCCCTAATATAACTCTCCCCTGGAACACACAGCCCCTAGGCCCCTTTTAAGGTGACCACGTCCACGCCCTGCGTGTCTAATTAGATGAACTTGCCTATACTTTATACTATGCTGGATCCTACTTTCTCCGTCTCAAAATAAACCAACATATTATGAGATGCGATAACCTGCTCAGATCATTATACTAGAATACGTCACATCTCATGATTTGTTTTTTGAGACGGAGCGAGTACTACTAAATTTGTTTACAACCCTTGCTAGTTTAATTACTCCCTCCCAAAAAAAAAA] [+] EMBL BI802415 [GAGTTTCCCACTAAGCCTATTAAACCCGGAACACCCACTGGGGACTCCCTCACCTGATCCCGGTGTAATTGGTAAGGAAAAATGTTCCTTGCTCTCCCCCCCTAATATAACTCTCCCCTGGAACACACAGCCCCTAGGCCCCTTTTAAGGTGACCACGTCCACGCCCTGCGTGTCTAATTAGATGAACTTGCCTATACTTTATACTATGCTGGATCCTACTTTCTCCGTCTCAAAATAAACCAACATATTATGAGATGCGATAACCTGCTCAGATCATTATACTAGAATACGTCACATCTCATGATTTGTTTTTTGAGACGGAGCGAGTACTACTAAATTTGTTTACAACCCTTGCTAGTTTAATTACTCCCTCCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11903#0 GATCTCTCCACAACTCCCCCCCCCCCTCCAGCTCTCTCCAAAGTCCAAGTCTCTCTCGGT 60 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 -ATCTCTCCACAACTCCCCCCCCCCCTCCAGCTCTCTCCAAAGTCCAAGTCTCTCTCGGT 59 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 GCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCGCCCCCGC 120 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 GCTCACGCCGCCGCCGGCCACCGCCGCCCCCCGTCCGTACACCGCGTGGCCCGCCCCCGC 119 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 GCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGATTGTTGG 180 consensus_11903#2 -------------------------------------CGGATGCGGAGCCAGATTGATGG 23 consensus_11903#1 GCAGGTGAGGGAGCTAGCGGCCTTCGTCTGCCGGCGCCGGAGGCGGAGCCAGATTGTTGG 179 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 GAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCTGGGGCGG 240 consensus_11903#2 GAAACCAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGGGGGGTCTTTTACTCCTGGGGCGG 83 consensus_11903#1 GAAACGAGTTTTCCGCCCGCTTCTCTGGTTTCTCGGCGGTGTCTTTTACTCCTGGGGCGG 239 consensus_11903#3 -----------------GAGTTTCCCACTAAGCCTATTAAACCCGGAACACCCACTGGGG 43 ** * * * * ** ** * ** consensus_11903#0 CGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTT 300 consensus_11903#2 TGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTT 143 consensus_11903#1 CGATCCCGACGCGGGGATGCGGCGGGCTGTGGCGTGATGTGTGGATCGGAGCATGGACTT 299 consensus_11903#3 ACTCCCTCACCTGATCCCGGTGTAATTGGTAAGGAAAAATGTTCCTTGCTCTCCCCCCCT 103 ** ** * * * ** * * *** * * * * consensus_11903#0 GATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCGCGGCGGG 360 consensus_11903#2 GATCGCGTCGCACTGTAGGAGCTGCAGCGGCCAGGGTGGGAGTGGGGGTGGCGCCGCAGG 203 consensus_11903#1 GATCGCGTCGCACGGTAGGAGCTGCAGCGGTCGGGGTGGGAGCAGGGGTCGCGCGGCGGG 359 consensus_11903#3 AATATAACTCTCCCCTGGAACACACAGCCCCTAGGCCCCTTTTAAGGTGACCACGTCCAC 163 ** * * * * **** ** ** * * * consensus_11903#0 GTGCGGCCATGACGATTTACAT-AGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACC 419 consensus_11903#2 GTGCGGCCATGACGATTTACAT-AGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACC 262 consensus_11903#1 GTGCGGCCATGACGATTTACAT-AGCGCGGGAGGCTTCCAAGGTATGGAGGAAGGTGACC 418 consensus_11903#3 GCCCTGC-GTGTCTAATTAGATGAACTTGCCTATACTTTATACTATGCTGGATCCTACTT 222 * * ** ** * * *** ** * * * * * **** *** * consensus_11903#0 ACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGA 479 consensus_11903#2 ACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCCAGAAGTGGGGATTGCTCCTCGCCGGA 322 consensus_11903#1 ACGGAGACGTCGGTGGAGCTCTCGCTGCTGCGCGAGAAGTGGGGATTGCTCCTCGCCGGA 478 consensus_11903#3 TCTCCGTC-TCAAAATAAACCAACATATTATG--AGATGCGATAACCTGCTCAGATCATT 279 * * * ** * * * * * *** * * * * * consensus_11903#0 AT--TGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGAC 537 consensus_11903#2 AT--TGTGTTTCACTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGAC 380 consensus_11903#1 AT--TGTGTTTCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTACTTGCATCGAC 536 consensus_11903#3 ATACTAGAATACGTCACATCTCATGATTTGTTTTTTGAGACG-GAGCGAGTACTACTAAA 338 ** * * * * ** * * * * * *** * * * * * * consensus_11903#0 CTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCAGAGTTTGGGCAAGACAAAG 597 consensus_11903#2 CTGGTCCACTTCTGCTGGACCTTGGATTTATGGCCCTTCCA------------------- 421 consensus_11903#1 CTGGTCCACTTCTGCAGGACCTTGGATTTATGGCCCTTCCA------------------- 577 consensus_11903#3 TTTGTTTACAACCCTTGCTAGTTTAATTACT--CCCTCCCAAAAAAAAAA---------- 386 * ** ** * * ** *** * **** *** consensus_11903#0 GTTATCTAAGTGAGAGCATATTTGCTTCCATCTTCGCTTCCTTTGTTTTATGGACTTTTC 657 consensus_11903#2 --------------------------------------------------TGGACTTTTC 431 consensus_11903#1 ------------------------------------------------------------ consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 ATCCTTTTATTTATCATAGCAAAAGATTCTACACTGTCCTAATCTGGCGCCGGGTGCTAG 717 consensus_11903#2 GTCCTTTTATTTATCATAGCAAAAGATTCTACTCTGTCCTAATCTGGCGCCGGGTGCTAG 491 consensus_11903#1 ------GAGTTTGGGCAAGACAAAGGTTAT--------CTAAGTGAGAGC---ATATTTG 620 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 CCTTTTTAGTT-GCTTCGCAGGTTTTAAGAATCATTACGTTCTATTCCACCCAGCTTCCG 776 consensus_11903#2 CCTTTTTAGTTAGCTTCGCAGGTTTTAAGAATCATT------------------------ 527 consensus_11903#1 CTTCCATCTTC-GCTTCCTTTGTTTTATGGACTTTT------------------------ 655 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 GGCCCAAACTACCATTGTCGTGAGGGCTCAAAGTTGGCTACTCTTCCACCACCCAACAAT 836 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 ------------------------------------------------------------ consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 GTATTTGAAGTGCTCCTGATTAACTTTCCTCGTGGAGTACTTTTTGGCTGCGGTGATCTG 896 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 ------------------------------------------------------------ consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 ATATTTTCATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGT 956 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 -------CATCTCACATGATTTTTACTCTTGTTTTTGTTCGAACATACCACAAATATGGT 708 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 TCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATA 1016 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 TCAAAAAGGTTTGTTAAGCTTCTTGCTTGGTTCATGGCCATAGTTCAGAGTCTTCTTATA 768 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 ATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTA 1076 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 ATTGCTTCTCGCAAACACTACTCTGTGGATGTTGTTGTTGCTTGGTATACCGTTAATTTA 828 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 GTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCT 1136 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 GTCGTATTCTTCGTGGACAACAAACTCCCAGAAATGCCGGATCGTACAAATGGAGTACCT 888 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 TTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGA 1196 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 TTGCTTCCATTGAGTACCAGGGAAAAGGATGGCAGGTTGAAGGAGGAGAAAGACAGCAGA 948 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 CTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGCGA 1256 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 CTGAAGGAAGAGTTCCATAAGCTATTAAACGGAAACCATGGGGATCCTACTGATCGGGTA 1008 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 CAGCGCGCGCAGATGAACGGGAGGCACGATGAAGACATCAATCACGCCCACAGCACGCTC 1316 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 TTGTAGAAGTCTTCTCCCTATATACTCCCTGAACAAGCCTAGCTTA--------GTACAG 1060 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 TCCGACGCTGCTGTCAATGGTGGTACATGAGCCGCGGCATCTGCTTTCCACCGGGAGTTT 1376 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 TCAGCCTGTCTATTAGATGAACTTGCCTATACTTTATACTATGCT--------GGATCCT 1112 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 GTCTTCTCGCGTCGACCCCGAGGAGAATCCTCTGGGGGCGGATTGAGAACAACCGCCCGG 1436 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 ACTTTCTCCGTCCCAAAATAAACAAACATATTATGAGATGCGATAACCTGCTCAGATCAT 1172 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 TCCATCTGCATAGTGCATGCACATCCTGAACAAGATTCCAGCGGCAGAGGCAGCATTACA 1496 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 TATACTAGAATACGTCACATCTCATGATTTGTTTATTGAGACGGAGCGAGTACTACTAAA 1232 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 CATGGTT----TCCTTGTCGATTTCTGCTCATCCACCATCCTGGTACTATAGCATGATCG 1552 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 TTTGTTTACAACCCTTGCTAGTTTAATTACTCCCTCCATCCTAATAATATACTACCTCCG 1292 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 CAGATAAAACGAATGAAATGAATGGATGATTTGGTGCTCTAATCAATCGGGCGGTAGACG 1612 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 T----------------------------------------------------------- 1293 consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 CTATTCAGGAATCAGGATCTTGGCCGCCGTAGTACGTTCTTCGGAGTCACTACTGTCGCT 1672 consensus_11903#2 ------------------------------------------------------------ consensus_11903#1 ------------------------------------------------------------ consensus_11903#3 ------------------------------------------------------------ consensus_11903#0 GTCCATAGTGGCCAGCTTAATCTTTCTGATCAAAAAAAAGA 1713 consensus_11903#2 ----------------------------------------- consensus_11903#1 ----------------------------------------- consensus_11903#3 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||