These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11905#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1178 fasta sequence [AGCTGGC-GCTGGC-GGC-GC-GC-GC-GC-GGGC-GCAGCTGTCGCC-GGGGTTCTACTC-GGCGAGCTGCCCCACCGTGCACGGCGTCGTGCGGCAGGTCATGTCGCAGGCCGTCATGAACGACACGCGCGCCGGCGCCGCCGTCCTCCGCCTCTTCTACCACGACTGCTTCGTCGGCGGCTGCGACGCGTCGGTGCTCCTCGACGACACCCCCGCGGCGCCCGGCGAGAAGG-GCGTCGGCCCC-AACGCCGTCGGCTCGACGACCGTCTTCGACCTCGTCGACACCATCAAGGCCCAGG-TCGAGGCCGTCTGCCCCGCCACCGTCTCCTGCGCCGACGTCCTCGCCATCGCCGCGCGCGACAGCGTCAACCTGCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGCCGCGACGCGCTGTCGCCGAGTCG-GAGCGCGGTGTCGACCGACCTCCCGGGCCCCGAGGCCGACATCTCCGCGCTCGTCTCCGCCTTCGCCGCCAAGGGCCTGAGCTCGCGCGACCTCGCCGCGCTGTCCGGCGCGCACACCGTCGGCCGCGCCAGCTGCGTCAACTTCCGCACCCGCGTCTACTGCGACGCCAACGTGAGCCCGGCGTTCGCGTCGCACCAGCGGCAGTCCTGCCCGGCGTCCGGCGGCGACGCC-GC-GCTGGCGCCGC-TGGACTCCCTGACCCCCGACGCGTTC-GACAACGGCTACTACCGCAACCTCGTCGCCGGCGCCGGGCTGCTGCACTCCGACCAGGAGCTGTTCAACAACGGGCCGGTGGACTCGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCT-CGTCGGACTTCGCCGCGTCCATGATCAGGCTC-GGGAACATC-GGCCCGTTGACCGGGTCAACCGGCGAGGT-CAGGCTCAACTGCAGGAAAGTGAATT-CCT-GAT-CGAT-ACT-ACT-AGATAGCATT-GCC-GCGCGCAAATT-GTT-CAT-AGTACAAAGTTTAAAGTTATATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGACATAAGAATGCAATAGAAATGTCCCAATTTTAGACATCAATCACTAGTGGATAATTCTTCCGTTTGTTCAATTAATTAAACCTTGCTTAATTCAGCTACCTGTAACTATTGCGACGGCTATGATTTTTGNAATGAANANAANAGNTTTAAAAAAAAAA] [+] EMBL AU184788 [AGCTGGCAGCTGGCAGGCAGCAGCAGCAGCAGGGCAGCAGCTGTCGCCAGGGGTTCTACTCAGGCGAGCTGCCCCACCGTGCACGGCGTCGTGCGGCAGGTCATGTCGCAGGCCGTCATGAACGACACGCGCGCCGGCGCCGCCGTCCTCCGCCTCTTCTACCACGACTGCTTCGTCGGCGGCTGCGACGCGTCGGTGCTCCTCGACGACACCCCCGCGGCGCCCGGCGAGAAGG GCGTNGGCCCC AACGCCGTCGGCTCGACGACCGTCTTCAACCTCGTCGACACCATCAAGGCCCAGGTTCGAGGCCGTTTGCCCCGCCACCGTNTCCT ] [+] EMBL AK099886 [ GCTGGC GCTGGC GGC GC GC GC GC GGGC GCAGCTGTCGCC GGGGTTCTACTC GGCGAGCTGCCCCACCGTGCACGGCGTCGTGCGGCAGGTCATGTCGCAGGCCGTCATGAACGACACGCGCGCCGGCGCCGCCGTCCTCCGCCTCTTCTACCACGACTGCTTCGTCGGCGGCTGCGACGCGTCGGTGCTCCTCGACGACACCCCCGCGGCGCCCGGCGAGAAGG GCGTCGGCCCC AACGCCGTCGGCTCGACGACCGTCTTCGACCTCGTCGACACCATCAAGGCCCAGG TCGAGGCCGTCTGCCCCGCCACCGTCTCCTGCGCCGACGTCCTCGCCATCGCCGCGCGCGACAGCGTCAACCTGCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGCCGCGACGCGCTGTCGCCGAGTCG GAGCGCGGTGTCGACCGACCTCCCGGGCCCCGAGGCCGACATCTCCGCGCTCGTCTCCGCCTTCGCCGCCAAGGGCCTGAGCTCGCGCGACCTCGCCGCGCTGTCCGGCGCGCACACCGTCGGCCGCGCCAGCTGCGTCAACTTCCGCACCCGCGTCTACTGCGACGCCAACGTGAGCCCGGCGTTCGCGTCGCACCAGCGGCAGTCCTGCCCGGCGTCCGGCGGCGACGCC GC GCTGGCGCCGC TGGACTCCCTGACCCCCGACGCGTTC GACAACGGCTACTACCGCAACCTCGTCGCCGGCGCCGGGCTGCTGCACTCCGACCAGGAGCTGTTCAACAACGGGCCGGTGGACTCGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCT CGTCGGACTTCGCCGCGTCCATGATCAGGCTC GGGAACATC GGCCCGTTGACCGGGTCAACCGGCGAGGT CAGGCTCAACTGCAGGAAAGTGAATT CCT GAT CGAT ACT ACT AGATAGCATT GCC GCGCGCAAATT GTT CAT AGTACAAAGTTTAAAGTTATATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGACATAAGAATGCAATAGAAATGTCCCAATTTTAGACATCAATCACTAGTGGATAATTCTTC ] [+] EMBL AK104670 [ GCTGGC GCTGGC GGC GC GC GC GC GGGC GCAGCTGTCGCC GGGGTTCTACTC GGCGAGCTGCCCCACCGTGCACGGCGTCGTGCGGCAGGTCATGTCGCAGGCCGTCATGAACGACACGCGCGCCGGCGCCGCCGTCCTCCGCCTCTTCTACCACGACTGCTTCGTCGGCGGCTGCGACGCGTCGGTGCTCCTCGACGACACCCCCGCGGCGCCCGGCGAGAAGG GCGTCGGCCCC AACGCCGTCGGCTCGACGACCGTCTTCGACCTCGTCGACACCATCAAGGCCCAGG TCGAGGCCGTCTGCCCCGCCACCGTCTCCTGCGCCGACGTCCTCGCCATCGCCGCGCGCGACAGCGTCAACCTGCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGCCGCGACGCGCTGTCGCCGAGTCG GAGCGCGGTGTCGACCGACCTCCCGGGCCCCGAGGCCGACATCTCCGCGCTCGTCTCCGCCTTCGCCGCCAAGGGCCTGAGCTCGCGCGACCTCGCCGCGCTGTCCGGCGCGCACACCGTCGGCCGCGCCAGCTGCGTCAACTTCCGCACCCGCGTCTACTGCGACGCCAACGTGAGCCCGGCGTTCGCGTCGCACCAGCGGCAGTCCTGCCCGGCGTCCGGCGGCGACGCC GC GCTGGCGCCGC TGGACTCCCTGACCCCCGACGCGTTC GACAACGGCTACTACCGCAACCTCGTCGCCGGCGCCGGGCTGCTGCACTCCGACCAGGAGCTGTTCAACAACGGGCCGGTGGACTCGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCT CGTCGGACTTCGCCGCGTCCATGATCAGGCTC GGGAACATC GGCCCGTTGACCGGGTCAACCGGCGAGGT CAGGCTCAACTGCAGGAAAGTGAATT CCT GAT CGAT ACT ACT AGATAGCATT GCC GCGCGCAAATT GTT CAT AGTACAAAGTTTAAAGTTATATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGACATAAGAATGCAATAGAAATGTCCCAATTTTAGACATCAATC ] [+] EMBL AK068642 [ GCTGGC GCTGGC GGC GC GC GC GC GGGC GCAGCTGTCGCC GGGGTTCTACTC GGCGAGCTGCCCCACCGTGCACGGCGTCGTGCGGCAGGTCATGTCGCAGGCCGTCATGAACGACACGCGCGCCGGCGCCGCCGTCCTCCGCCTCTTCTACCACGACTGCTTCGTCGGCGGCTGCGACGCGTCGGTGCTCCTCGACGACACCCCCGCGGCGCCCGGCGAGAAGG GCGTCGGCCCC AACGCCGTCGGCTCGACGACCGTCTTCGACCTCGTCGACACCATCAAGGCCCAGG TCGAGGCCGTCTGCCCCGCCACCGTCTCCTGCGCCGACGTCCTCGCCATCGCCGCGCGCGACAGCGTCAACCTGCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGCCGCGACGCGCTGTCGCCGAGTCG GAGCGCGGTGTCGACCGACCTCCCGGGCCCCGAGGCCGACATCTCCGCGCTCGTCTCCGCCTTCGCCGCCAAGGGCCTGAGCTCGCGCGACCTCGCCGCGCTGTCCGGCGCGCACACCGTCGGCCGCGCCAGCTGCGTCAACTTCCGCACCCGCGTCTACTGCGACGCCAACGTGAGCCCGGCGTTCGCGTCGCACCAGCGGCAGTCCTGCCCGGCGTCCGGCGGCGACGCC GC GCTGGCGCCGC TGGACTCCCTGACCCCCGACGCGTTC GACAACGGCTACTACCGCAACCTCGTCGCCGGCGCCGGGCTGCTGCACTCCGACCAGGAGCTGTTCAACAACGGGCCGGTGGACTCGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCT CGTCGGACTTCGCCGCGTCCATGATCAGGCTC GGGAACATC GGCCCGTTGACCGGGTCAACCGGCGAGGT CAGGCTCAACTGCAGGAAAGTGAATT CCT GAT CGAT ACT ACT AGATAGCATT GCC GCGCGCAAATT GTT CAT AGTACAAAGTTTAAAGTTATATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGACATAAGAATGCAATAGAAATGTCCCAAT ] [+] EMBL C22713 [ GCTGGC GCTGGC GGC GC GC GC GC GGGC GCAGCTGTCGCC GGGGTTCTACTC GGCGAGCTGCCCCACCGTGCACGGCGTCGTGCGGCAGGTCATGTCGCAGGCCGTCATGAACGACACGCGCGCCGGCGNCGCCGTCCTCCGCCTCTTCTACCACGACTGCTTCGTCGGCGGCTGCGACGCGTCGGTGCTCCTCGACGACACCCCCGCGGCGCCCGGCGAGAAGGNGCGTCGGCCCCAAACGCC ] [+] EMBL AU076282 [ GGTNCCGCTCGGCCGCCGCNACGCGCTGTCGCCGAGTCGAAAGC CGGTGTCGACCGACCTCCCGGGCCCCGAGGCCGACATCTCCGCGCTCGTCTCCGCCTTCGCCGCCAAGGGCCTGAGCTCGCGCGACCTCGCCGCGCTGTCCGGCGCGCACACCGTCGGCCGCGCCAGCTGCGTCAACTTCCGCACCCGCGTCTACTGCGACGCCAACGTGAGCCCGGCGTTCGCGTCGCACCAGCGGCAGTCCTGCCCGGCGTCCGGCGGCGACGCC GC GCTGGCGCCGC TGGACTCCCTGACCCCCGACGCGTTC GACAACGGCTACTACCGCAACCTCGTCGCCGGCGCCGGGCTGCTGCACTCCGACCAGGAGCTGTTCAACAACGGGCCGGTGGACTCGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCT CGTCGGACTTCGCCGCGTCCATGATCAGGCTC GGGAACATC GGCCCGTTGACCGGGTCAACCGGCGAGGT CAGGCTCAACTGCAGGAAAGTGAATT CCT GAT CGAT ACT ACT AGATAGCATT GCC GCGCGCAAATT GTT CAT AGTACAAAGTTTAAAGTTATATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGACATAAGAATGCAATAGAAATGTCCCAATTTTAGACATCAAaaaaaa ] [+] EMBL BI807207 [ ctGCGCCAGTCCTNCCC GCGTCCGGCGGCGACTCCTGCTGCTGGCGCCGCGTGGACTCCCTGACCCCCGACGCGTTCTGACAACGGCTACTACCGCAACCTCGTCGCCGGCTCCGGGCTGCTGCACTCCGACCAGGAGCTGTTCAAC ACGGGCCGGTGGACTCGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCTGCGTCGGACTTCGCCGCGTCCATGATCAGGCTCTGGGAACATCTGGCCCGTTGACCGGGGCAACCGGCGAGGTGCAGGCTCAACTGCAGGAAAGTGAATTGCCTGGATGCGATGACTGACTGAGATAGCATTGGCCAGCGCGCAAATTGGTTGCATGAGTAC AAGNTTAAAGTTATATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGACATAAGAATGC ATAGAAATGTCCC ATTTTAGACATCAAaaaaaaaa ] [+] EMBL C20523 [ CACTCCGACCAGGAGCTGTTCAACAACGGGCCGGTGGACTCGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCT CGTCGGACTTCGCCGCGTCCATGATCAGGCTC GGGAACATC GGCCCGTTGACCGGGTCAACCGGCGAGGT CAGGCTCAACTGCAGGAAAGTGAATT CCT GAT CGAT ACT ACT AGATAGNATT GCC GCGCGCAAATT GTT CAT AGTACAAAGTTTAAAGTTATATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGANATAAGAATGCAATAGAAATGTCCCAATTTTAGANATCAATCACTAGTGGATAATTCTTCCGTTTGTTCAATTAATTAAACCTTGCTTAATTCAGCTACCTGTAACTATTGCGACGGCTATGATTTTTGNAATGAANANAANAGNTTTAAAAAAAAAA] consensusID : consensus_11905#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence [GCTGGCGNTGGCGNCGCGCGCGCGGGCGAGTGTACGCCGGGGTTCTACTCGGCGAGCTGCCCCACCGTGCACGGCGTCGTNGGCAGGTCATGTCGNAGGCCGTCATGAACGACACGNGNGTCGTCGACGTCGTCCTCCGNCTCTTCTACCACGACTGNTTCGTCGTCGGCTGCGACGNGTCGNTGCTC] [+] EMBL OSS10927A [GCTGGCGNTGGCGNCGCGCGCGCGGGCGAGTGTACGCCGGGGTTCTACTCGGCGAGCTGCCCCACCGTGCACGGCGTCGTNGGCAGGTCATGTCGNAGGCCGTCATGAACGACACGNGNGTCGTCGACGTCGTCCTCCGNCTCTTCTACCACGACTGNTTCGTCGTCGGCTGCGACGNGTCGNTGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11905#0 AGCTGGCGCTGGCGGCGCGCGCGCGGGCGCAGCTGTCGCCGGGGTTCTACTCGGCGAGCT 60 consensus_11905#1 -GCTGGCGNTGGCGNCGCGCGCGCGGGCG-AGTGTACGCCGGGGTTCTACTCGGCGAGCT 58 ******* ***** ************** ** ************************ consensus_11905#0 GCCCCACCGTGCACGGCGTCGTGCGGCAGGTCATGTCGCAGGCCGTCATGAACGACACGC 120 consensus_11905#1 GCCCCACCGTGCACGGCGTCGTN-GGCAGGTCATGTCGNAGGCCGTCATGAACGACACGN 117 ********************** ************** ******************** consensus_11905#0 GCGCCGGCGCCGCCGTCCTCCGCCTCTTCTACCACGACTGCTTCGTCGGCGGCTGCGACG 180 consensus_11905#1 GNGTCGTCGACGTCGTCCTCCGNCTCTTCTACCACGACTGNTTCGTCGTCGGCTGCGACG 177 * * ** ** ** ********* ***************** ******* *********** consensus_11905#0 CGTCGGTGCTCCTCGACGACACCCCCGCGGCGCCCGGCGAGAAGGGCGTCGGCCCCAACG 240 consensus_11905#1 NGTCGNTGCTC------------------------------------------------- 188 **** ***** consensus_11905#0 CCGTCGGCTCGACGACCGTCTTCGACCTCGTCGACACCATCAAGGCCCAGGTCGAGGCCG 300 consensus_11905#1 ------------------------------------------------------------ consensus_11905#0 TCTGCCCCGCCACCGTCTCCTGCGCCGACGTCCTCGCCATCGCCGCGCGCGACAGCGTCA 360 consensus_11905#1 ------------------------------------------------------------ consensus_11905#0 ACCTGCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGCCGCGACGCGCTGTCGCCGA 420 consensus_11905#1 ------------------------------------------------------------ consensus_11905#0 GTCGGAGCGCGGTGTCGACCGACCTCCCGGGCCCCGAGGCCGACATCTCCGCGCTCGTCT 480 consensus_11905#1 ------------------------------------------------------------ consensus_11905#0 CCGCCTTCGCCGCCAAGGGCCTGAGCTCGCGCGACCTCGCCGCGCTGTCCGGCGCGCACA 540 consensus_11905#1 ------------------------------------------------------------ consensus_11905#0 CCGTCGGCCGCGCCAGCTGCGTCAACTTCCGCACCCGCGTCTACTGCGACGCCAACGTGA 600 consensus_11905#1 ------------------------------------------------------------ consensus_11905#0 GCCCGGCGTTCGCGTCGCACCAGCGGCAGTCCTGCCCGGCGTCCGGCGGCGACGCCGCGC 660 consensus_11905#1 ------------------------------------------------------------ consensus_11905#0 TGGCGCCGCTGGACTCCCTGACCCCCGACGCGTTCGACAACGGCTACTACCGCAACCTCG 720 consensus_11905#1 ------------------------------------------------------------ consensus_11905#0 TCGCCGGCGCCGGGCTGCTGCACTCCGACCAGGAGCTGTTCAACAACGGGCCGGTGGACT 780 consensus_11905#1 ------------------------------------------------------------ consensus_11905#0 CGGTGGTGCAGCTGTACAGCTCCAACGCCGCCGCCTTCTCGTCGGACTTCGCCGCGTCCA 840 consensus_11905#1 ------------------------------------------------------------ consensus_11905#0 TGATCAGGCTCGGGAACATCGGCCCGTTGACCGGGTCAACCGGCGAGGTCAGGCTCAACT 900 consensus_11905#1 ------------------------------------------------------------ consensus_11905#0 GCAGGAAAGTGAATTCCTGATCGATACTACTAGATAGCATTGCCGCGCGCAAATTGTTCA 960 consensus_11905#1 ------------------------------------------------------------ consensus_11905#0 TAGTACAAAGTTTAAAGTTATATAATCAGCTGTCAATTTCATGTATTAAGTGAATTATGA 1020 consensus_11905#1 ------------------------------------------------------------ consensus_11905#0 CATAAGAATGCAATAGAAATGTCCCAATTTTAGACATCAATCACTAGTGGATAATTCTTC 1080 consensus_11905#1 ------------------------------------------------------------ consensus_11905#0 CGTTTGTTCAATTAATTAAACCTTGCTTAATTCAGCTACCTGTAACTATTGCGACGGCTA 1140 consensus_11905#1 ------------------------------------------------------------ consensus_11905#0 TGATTTTTGNAATGAANANAANAGNTTTAAAAAAAAAA 1178 consensus_11905#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||