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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11906#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1017 fasta sequence
[ACGCCGCCTTCCCGCCGCCTCCGCTCTTCTTCCCCCAACCGCGTCGCAAGCCCACGGCGAGCGCCGCCGCCGTCCCACCGTCGCCGATGACCCGCGGCGTCGCTATGGCGCACGCGAGGCTCCTCCTGGCGCGCTACTACGTATGCCAAACGCGGGGACGAAGAACTCACCGCCCAGCCCCCCACCAACGCCGTGTAAGCATACCGTCGAACACCTCCCGTGCGCCACTAACCCGCCTCTTTTCTGTTGCCTGTGCAGGCGATGGCGGCCCCCAGTTGGCCTACCGTATCCAAGAACCTTCCGCTGCTGGGCCATGGACGTTCTCATCATCCGATGTATGCAAGTCAAGACGAGATTAAAATGTCAAGTAGAAGATGGTGCCATGGTTCTCCTGACAATCAAGAGCTGGCAAGGAAGATTTGTGTTCCATGCAATTCTAAGGATATACATGCCATGCCAGAAGATTCTGCTAAGAAGATGCTAGAACAGGTGGGTGGTTGGGAATTAGCAACCGAAGGTGACATTCTGAAATTGCACAGAGCATGGAAGGTGAAGAATTTTGTAAAAGGGCTTGAATTCCTTCAGCTTGTTGCTGCTGTTGCTGAGGAAGAAGGCCCACCCACCCCTGATCTTCATCTTGTCGGTTGGAACAATGTGAAAATTGATGTTTGGACTCACTCTGTCAGAGGCTTAACTGACAATGATTTCATCCTTGCTGCGAAGATCAATAACCTCAACTTAGAAGGCCTCTTAAGCAAGAAAGCTACAGTCCAAAAGTAGTTCGCGCAGATGAAGCGATTGATTTCTGACGAGATTTATGTACTTGCTTCGGTTAGAATGCGTGAGTTGAGGTATCTTTAACTTGATAAGCTTTTCTTGAATTTGTACCGGGAGTTTCTCTGTTCTTTCTAAATTTTACCAATGCTGTTGGACCGGGTCTACTTCTGTTACAGAATGTCGAGAACCACCATAATCTAGATTTGATCAAAAAAAAAAAAAAAAACACTGTTATGCCGT]
[+] EMBL CF338044 [ACGCCGCCTTCCCGCCGCCTCCGCTCTTCTTCCCCCAACCGCGTCGCAAGCCCACGGCGAGCGCCGCCGCCGTCCCACCGTCGCCGATGACCCGCGGCGTCGCTATGGCGCACGCGAGGCTCCTCCTGGCGCGCTACTACGTATGCCAAACGCGGGGACGAAGAACTCACCGCCCAGCCCCCCACCAACGCCGTGTAAGCATACCGTCGAACACCTCCCGTGCGCCACTAACCCGCCTCTTTTCTGTTGCCTGTGCAGGCGATGGCGGCCCCCAGTTGGCCTACCGTATCCAAGAACCTTCCGCTGCTGGGCCATGGACGTTCTCATCATCCGATGTATGCAAGTCAAGACGAGATTAAAATGTCAAGTAGAAGATGGTGCCATGGTTCTCCTGACAATCAAGAGCTGGCAAGGAAGATTTGTGTTCCATGCAATTCTAAGGATATACATGCCATGCCAGAAGATTCTGCTAA ]
[+] EMBL CF337780 [ACGCCGCCTTCCCGCCGCCTCCGCTCTTCTTCCCCCAACCGCGTCGCAAGCCCACGGCGAGCGCCGCCGCCGTCCCACCGTCGCCGATGACCCGCGGCGTCGCTATGGCGCACGCGAGGCTCCTCCTGGCGCGCTACTACGTATGCCAAACGCGGGGACGAAGAACTCACCGCCCAGCCCCCCACCAACGCCGTGTAAGCATACCGTCGAACACCTCCCGTGCGCCACTAACCCGCCTCTTTTCTGTTGCCTGTGCAGGCGATGGCGGCCCCCAGTTGGCCTACCGTATCCAAGAACCTTCCGCTGCTGGGCCATGGACGTTCTCATCATCCGATGTATGCAAGTCAAGACGAGATTAAAATGTCAAGTAGAAGATGGTGCCATGGTTCTCCTGACAATCAAGAGCTGGCAAGGAAGATTTGTGTTCCATGCAATTCTAAGGATATACATGCCATGCCAGAAGATTCTGCTA ]
[-] EMBL CF337781 [ GAAGATGGTGCCATGGTTCTCCTGACAATCAAGAGCTGGCAAGGAAGATTTGTGTTCCATGCAATTCTAAGGATATACATGCCATGCCAGAAGATTCTGCTAAGAAGATGCTAGAACAGGTGGGTGGTTGGGAATTAGCAACCGAAGGTGACATTCTGAAATTGCACAGAGCATGGAAGGTGAAGAATTTTGTAAAAGGGCTTGAATTCCTTCAGCTTGTTGCTGCTGTTGCTGAGGAAGAAGGCCCACCCACCCCTGATCTTCATCTTGTCGGTTGGAACAATGTGAAAATTGATGTTTGGACTCACTCTGTCAGAGGCTTAACTGACAATGATTTCATCCTTGCTGCGAAGATCAATAACCTCAACTTAGAAGGCCTCTTAAGCAAGAAAGCTACAGTCCAAAAGTAGTTCGCGCAGATGAAGCGATTGATTTCTGACGAGATTTATGTACTTGCTTCGGTTAGAATGCGTGAGTTGAGGTATCTTTAACTTGATAAGCTTTTCTTGAATTTGTACCGGGAGTTTCTCTGTTCTTTCTAAATTTTACCAATGCTGTTGGACCGGGTCTACTTCTGTTACAGAATGTCGAGAACCACCATAATCTAGATTTGATCAAAAAAAAAAAAAAAAACACTGTTATGCCGT]
[-] EMBL CF338045 [ TTGTGTTCCATGCAATTCTAAGGATATACATGCCATGCCAGAAGATTCTGCTAAGAAGATGCTAGAACAGGTGGGTGGTTGGGAATTAGCAACCGAAGGTGACATTCTGAAATTGCACAGAGCATGGAAGGTGAAGAATTTTGTAAAAGGGCTTGAATTCCTTCAGCTTGTTGCTGCTGTTGCTGAGGAAGAAGG CCACCCCACCCTGATCTTCATCTTGTCGGTTGGAACAATGTGAAAATTGATGTTTGGACTCACTCTGTCAGAGGCTTAACTGACAATGATTTCATCCTTGCTGCGAAGATCAATAACCTCAACTTAGAAGGCCTCTTAAGCAAGAAAGCTACAGTCCAAAAGTAGTTCGCGCAGATGAAGCGATTGATTTCTGACGAGATTTATGTACTTGCTTCGGTTAGAATGCGTGAGTTGAGGTATCTTTAACTTGATAAGCTTTTCTTGAATTTGTACCGGGAGTTTCTCTGTTCTTTCTAAATTTTACCAATGCTGTTGGACCGGGTCTACTTCTGTTACAGAATGTCGAGAACCACCATAATCTAGATTTGATCAAAAA ]
consensusID : consensus_11906#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 949 fasta sequence
[CACACGCCAGGCAAACCCACACGCCGCCTTCCCGCCGCCTCCGCTCTTCTTCCCCCAACCGCGTCGCAAGCCCACGGCGAGCGCCGCCGCCGTCCCACCGTCGCCGATGACCCGCGGCGTCGCTATGGCGCACGCGAGGCTCCTCCTGGCGCGCTACTACGCGATGGCGGCCCCCAGTTGGCCTACCGTATCCAAGAACCTTCCGCTGCTGGGCCATGGACGTTCTCATCATCCGATGTATGCAAGTCAAGACGAGATTAAAATGTC-AAGTAGAAG-ATGGTGCCATGGTTCTCCTGACA-ATCA-AGAGCTGGCA-AAGAAGA-TTTGTGTTCCATGCAA-TTC-TAAGG-ATATACATGCCATGCCA-G-AAG-ATTCTGCTAAGAAGATGCTAGAACAGGTGGGTGGTTGGGAATTAGCAACCGAAGGTGACATTCTGAAATTGCACAGAGCATGGAAGGTGAAGAATTTTGTAAAAGGGCTTGAATTCCTTCAGCTTGTTGCTGCTG-TTGCTGAGGAAGAAGGCCACCACCCTGATCTTCATCTTGTCGG-TTGGAACAATGTGAAAATTGATGTTTGGACTCACTCTGTCAGAGGCTTAACTGACAATGATTTCATCCTTGCTGCGAAGATCAATAACCTCAACTTAGAAGGCCTCTTAAGCAAGAAAGCTACAGTCCAAAAGTAGTTCGCGCAGATGAAGCGATTGATTTCTGACGAGATTTATGTACTTGCTTCGGTTAGAATGCGTGAGTTGAGGTATCTTTAACTTGATAAGCTTTTCTTGAATTTGTACCGGGAGTTTCTCTGTTCTTTCTAAATTTTACCAATGCTGTTGGACCGGGTCTACTTCTGTTACAGAATGTCGAGAACCACCATAATCTAGATTTGATCAAGGAGAACCTGTTTCTCTTACATGTGGGCCAAGAGATGTAGGGTCCACGAACATTTTAGAGTC]
[+] EMBL AK058452 [CACACGCCAGGCAAACCCACACGCCGCCTTCCCGCCGCCTCCGCTCTTCTTCCCCCAACCGCGTCGCAAGCCCACGGCGAGCGCCGCCGCCGTCCCACCGTCGCCGATGACCCGCGGCGTCGCTATGGCGCACGCGAGGCTCCTCCTGGCGCGCTACTACGCGATGGCGGCCCCCAGTTGGCCTACCGTATCCAAGAACCTTCCGCTGCTGGGCCATGGACGTTCTCATCATCCGATGTATGCAAGTCAAGACGAGATTAAAATGTC AAGTAGAAG ATGGTGCCATGGTTCTCCTGACA ATCA AGAGCTGGCA AAGAAGA TTTGTGTTCCATGCAA TTC TAAGG ATATACATGCCATGCCA G AAG ATTCTGCTAAGAAGATGCTAGAACAAGTGGGTGGTTGGGAATTAGCAACCGAAGGTGACATTCTGAAATTGCACAGAGCATGGAAGGTGAAGAATTTTGTAAAAGGGCTTGAATTCCTTCAGCTTGTTGCTGCTG TTGCTGAGGAAGAAGGCCACCACCCTGATCTTCATCTTGTCGG TTGGAACAATGTGAAAATTGATGTTTGGACTCACTCTGTCAGAGGCTTAACTGACAATGATTTCATCCTTGCTGCGAAGATCAATAACCTCAACTTAGAAGGCCTCTTAAGCAAGAAAGCTACAGTCCAAAAGTAGTTCGCGCAGATGAAGCGATTGATTTCTGACGAGATTTATGTACTTGCTTCGGTTAGAATGCGTGAGTTGAGGTATCTTTAACTTGATAAGCTTTTCTTGAATTTGTACCGGGAGTTTCTCTGTTCTTTCTAAATTTTACCAATGCTGTTG ]
[+] EMBL AK060072 [ AAACCCACACGCCGCCTTCCCGCCGCCTCCGCTCTTCTTCCCCCAACCGCGTCGCAAGCCCACGGCGAGCGCCGCCGCCGTCCCACCGTCGCCGATGACCCGCGGCGTCGCTATGGCGCACGCGAGGCTCCTCCTGGCGCGCTACTACGCGATGGCGGCCCCCAGTTGGCCTACCGTATCCAAGAACCTTCCGCTGCTGGGCCATGGACGTTCTCATCATCCGATGTATGCAAGTCAAGACGAGATTAAAATGTC AAGTAGAAG ATGGTGCCATGGTTCTCCTGACA ATCA AGAGCTGGCA AAGAAGA TTTGTGTTCCATGCAA TTC TAAGG ATATACATGCCATGCCA G AAG ATTCTGCTAAGAAGATGCTAGAACAGGTGGGTGGTTGGGAATTAGCAACCGAAGGTGACATTCTGAAATTGCACAGAGCATGGAAGGTGAAGAATTTTGTAAAAGGGCTTGAATTCCTTCAGCTTGTTGCTGCTG TTGCTGAGGAAGAAGGCCACCACCCTGATCTTCATCTTGTCGG TTGGAACAATGTGAAAATTGATGTTTGGACTCACTCTGTCAGAGGCTTAACTGACAATGATTTCATCCTTGCTGCGAAGATCAATAACCTCAACTTAGAAGGCCTCTTAAGCAAGAAAGCTACAGTCCAAAAGTAGTTCGCGCAGATGAAGCGATTGATTTCTGACGAGATTTATGTACTTGCTTCGGTTAGAATGCGTGAGTTGAGGTATCTTTAACTTGATAAGCTTTTCTTGAATTTGTACCGGGAGTTTCTCTGTTCTTTCTAAATTTTACCAATGCTGTTGGACCGGGTCTACTTCTGTTACAGAATGTCGAGAACCACCATAATCTAGATTTGATCAAGGAGAACCTGTTTCTCTTACATGTGGGCCAAGAGATGTAGGGTCCACGAACATTTTAGAGTC]
[+] EMBL CB668553 [ CCGCCGCCTCCGCTCTTCTTCCCCCAACCGCGTCGCAAGCCCACGGCGAGCGCCGCCGCCGTCCCACCGTCGCCGATGACCCGCGGCGTCGCTATGGCGCACGCGAGGCTCCTCCTGGCGCGCTACTACGCGATGGCGGCCCCCAGTTGGCCTACCGTATCCAAGAACCTTCCGCTGCTGGGCCATGGACGTTCTCATCATCCGATGTATGCAAGTCAAGACGAGATTAAAATGTC AAGTAGAAG ATGGTGCCATGGTTCTCCTGACA ATCA AGAGCTGGCA AAGAAGA TTTGTGTTCCATGCAA TTC TAAGG ATATACATGCCATGCCA G AAG ATTCTGCTAAGAAGATGCTAGAACAGGTGGGTGGTTGGGAATTAGCAACCGAAGGTGACATTCTGAAATTGCACAGAGCATGGAAGGTGAAGAATTTTGTAAAAGGGCTTGAATTCCTTCAGCTTGTTGCTGCTG TTGCTGAGGAAGAAGGCCACCACCCTGATCTTCATCTTGTCGG TTGGAACAATGTGAAAATTGATGTTTGGACTCACTCTGTCAGAGGCTTAACTGACAATGATTTCATCCTTGCTGCGAAGATCAATAACCTCAACTTAGAAGGCCTCTTAAGCAAGAAAGCTACAGTCCAAAAGTAGTTCGCGCAGATGAAGCGATTGATTTCTGACGAGATTTATGTACTTGCTTCGGTTAGAATGCGTGAGTTGAGGTATCTTTAACTTGATAAGCTTTTCTTGAATTTGTACCGGAAGTTTCTCT ]
[-] EMBL CB668554 [ GCTCCTCCTGGCGCGCTACTACGCGATGGCGGCCCCCAGTTGGCCTACCGTATCCAAGAACCTTCCGCTGCTGGGCCATGGACGTTCTCATCATCCGATGTATGCAAGTCAAGACGAGATTAAAATGTC AAGTAGAAG ATGGTGCCATGGTTCTCCTGACA ATCA AGAGCTGGCA AAGAAGA TTTGTGTTCCATGCAA TTC TAAGG ATATACATGCCATGCCA G AAG ATTCTGCTAAGAAGATGCTAGAACAGGTGGGTGGTTGGGAATTAGCAACCGAAGGTGACATTCTGAAATTGCACAGAGCATGGAAGGTGAAGAATTTTGTAAAAGGGCTTGAATTCCTTCAGCTTGTTGCTGCTG TTGCTGAGGAAGAAGGCCACCACCCTGATCTTCATCTTGTCGG TTGGAACAATGTGAAAATTGATGTTTGGACTCACTCTGTCAGAGGCTTAACTGACAATGATTTCATCCTTGCTGCGAAGATCAATAACCTCAACTTAGAAGGCCTCTTAAGCAAGAAAGCTACAGTCCAAAAGTAGTTCGCGCAGATGAAGCGATTGATTTCTGACGAGATTTATGTACTTGCTTCGGTTAGAATGCGTGAGTTGAGGTATCTTTAACTTGATAAGCTTTTCTTGAATTTGTACCGGGAGTTTCTCTGTTCTTTCTAAATTTTACCAATGCTGTTGGACCGGGTCTACTTCTGTTACAGAATGTCGAGAACCACCATAATCTAGATTTat ]
[+] EMBL BI812027 [ TCATCATCCGATGTAT CAAGTCAAAACGAGATT AAATTTCAAAGTAGAAGAATTGTCCCATGGTTCTCCTGACACATCACAGA CT GCACAAGAAGATTTTGTGTTCCACCCAATTTCTTAAGGAATATACAT CCATGCCACGAAAGAATTCTGCTAAGAAGATGCTAGAACAGGTGGGT GTTGGGAATTA CAACCGAAGGTGACATTCTGAAATTGCACAGAGCATGGAAGGTGAAGAATTTTGTAAAAGGGCTTGAATTCCTTCAGCTTGTTGCTGCTGTTTGCTGAGGAAGAAGGCCACCACCCTGATCTTCATCTTGTCGGTTTGGAACCATGTGAAAATTGATGTTTGGACTCACTCTGTCAGAGGCTTAACTGACAATGATGTCATCCTTGCTGCGAAGATC ATAACCTC ACTTAGAAGGCCTCTTAAGCAAGAAAGCTACAGTCCCAAAGTAGTTAGCGCAGATGAAGCGATTGATTTCTGACGAGATTTATGTACTTGCTTCGGTTAGAATGCGTGAGTTGAGGTATCTTTAACTTGATAAGCTTTTCTTGAATTTGTACCGGGAGTTTCTCTGTTCTTTCTAAATTTTACC ATGCTGTTGGACCGGGTCTACTTCTGTTAAAAAAaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11906#0 --------------------ACGCCGCCTTCCCGCCGCCTCCGCTCTTCTTCCCCCAACC 40
consensus_11906#1 CACACGCCAGGCAAACCCACACGCCGCCTTCCCGCCGCCTCCGCTCTTCTTCCCCCAACC 60
****************************************
consensus_11906#0 GCGTCGCAAGCCCACGGCGAGCGCCGCCGCCGTCCCACCGTCGCCGATGACCCGCGGCGT 100
consensus_11906#1 GCGTCGCAAGCCCACGGCGAGCGCCGCCGCCGTCCCACCGTCGCCGATGACCCGCGGCGT 120
************************************************************
consensus_11906#0 CGCTATGGCGCACGCGAGGCTCCTCCTGGCGCGCTACTACGTATGCCAAACGCGGGGACG 160
consensus_11906#1 CGCTATGGCGCACGCGAGGCTCCTCCTGGCGCGCTACTACG------------------- 161
*****************************************
consensus_11906#0 AAGAACTCACCGCCCAGCCCCCCACCAACGCCGTGTAAGCATACCGTCGAACACCTCCCG 220
consensus_11906#1 ------------------------------------------------------------
consensus_11906#0 TGCGCCACTAACCCGCCTCTTTTCTGTTGCCTGTGCAGGCGATGGCGGCCCCCAGTTGGC 280
consensus_11906#1 ---------------------------------------CGATGGCGGCCCCCAGTTGGC 182
*********************
consensus_11906#0 CTACCGTATCCAAGAACCTTCCGCTGCTGGGCCATGGACGTTCTCATCATCCGATGTATG 340
consensus_11906#1 CTACCGTATCCAAGAACCTTCCGCTGCTGGGCCATGGACGTTCTCATCATCCGATGTATG 242
************************************************************
consensus_11906#0 CAAGTCAAGACGAGATTAAAATGTCAAGTAGAAGATGGTGCCATGGTTCTCCTGACAATC 400
consensus_11906#1 CAAGTCAAGACGAGATTAAAATGTCAAGTAGAAGATGGTGCCATGGTTCTCCTGACAATC 302
************************************************************
consensus_11906#0 AAGAGCTGGCAAGGAAGATTTGTGTTCCATGCAATTCTAAGGATATACATGCCATGCCAG 460
consensus_11906#1 AAGAGCTGGCAAAGAAGATTTGTGTTCCATGCAATTCTAAGGATATACATGCCATGCCAG 362
************ ***********************************************
consensus_11906#0 AAGATTCTGCTAAGAAGATGCTAGAACAGGTGGGTGGTTGGGAATTAGCAACCGAAGGTG 520
consensus_11906#1 AAGATTCTGCTAAGAAGATGCTAGAACAGGTGGGTGGTTGGGAATTAGCAACCGAAGGTG 422
************************************************************
consensus_11906#0 ACATTCTGAAATTGCACAGAGCATGGAAGGTGAAGAATTTTGTAAAAGGGCTTGAATTCC 580
consensus_11906#1 ACATTCTGAAATTGCACAGAGCATGGAAGGTGAAGAATTTTGTAAAAGGGCTTGAATTCC 482
************************************************************
consensus_11906#0 TTCAGCTTGTTGCTGCTGTTGCTGAGGAAGAAGGCCCACCCACCCCTGATCTTCATCTTG 640
consensus_11906#1 TTCAGCTTGTTGCTGCTGTTGCTGAGGAAGAAGGCCA--CCACCC-TGATCTTCATCTTG 539
************************************ ****** **************
consensus_11906#0 TCGGTTGGAACAATGTGAAAATTGATGTTTGGACTCACTCTGTCAGAGGCTTAACTGACA 700
consensus_11906#1 TCGGTTGGAACAATGTGAAAATTGATGTTTGGACTCACTCTGTCAGAGGCTTAACTGACA 599
************************************************************
consensus_11906#0 ATGATTTCATCCTTGCTGCGAAGATCAATAACCTCAACTTAGAAGGCCTCTTAAGCAAGA 760
consensus_11906#1 ATGATTTCATCCTTGCTGCGAAGATCAATAACCTCAACTTAGAAGGCCTCTTAAGCAAGA 659
************************************************************
consensus_11906#0 AAGCTACAGTCCAAAAGTAGTTCGCGCAGATGAAGCGATTGATTTCTGACGAGATTTATG 820
consensus_11906#1 AAGCTACAGTCCAAAAGTAGTTCGCGCAGATGAAGCGATTGATTTCTGACGAGATTTATG 719
************************************************************
consensus_11906#0 TACTTGCTTCGGTTAGAATGCGTGAGTTGAGGTATCTTTAACTTGATAAGCTTTTCTTGA 880
consensus_11906#1 TACTTGCTTCGGTTAGAATGCGTGAGTTGAGGTATCTTTAACTTGATAAGCTTTTCTTGA 779
************************************************************
consensus_11906#0 ATTTGTACCGGGAGTTTCTCTGTTCTTTCTAAATTTTACCAATGCTGTTGGACCGGGTCT 940
consensus_11906#1 ATTTGTACCGGGAGTTTCTCTGTTCTTTCTAAATTTTACCAATGCTGTTGGACCGGGTCT 839
************************************************************
consensus_11906#0 ACTTCTGTTACAGAATGTCGAGAACCACCATAATCTAGATTTGATCAAAAAAAAAAAAAA 1000
consensus_11906#1 ACTTCTGTTACAGAATGTCGAGAACCACCATAATCTAGATTTGATCAAGGAGAACCTGTT 899
************************************************ * **
consensus_11906#0 AAACACTGTTATGCCGT----------------------------------- 1017
consensus_11906#1 T--CTCTTACATGTGGGCCAAGAGATGTAGGGTCCACGAACATTTTAGAGTC 949
* ** *** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||