These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 680 fasta sequence [GCAAACCNTAACGGCTTAAG-ACTTAAGAAGCGANCCGGCCGGAATGCGGCCGGCGGCGGCGG-TGCCG-CCGGCTGGAA-GGGCAGTCCGGTAC-GGCGTGTTATCGAAAG-CGCTGCCGACAC-GGCTGCACATCAACAGCGGCCGAGGTCTCGACATCTCCGAGGCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTTTGTCAAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCC-TTGAGCGCATGAAGAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGG-CGTCACTATTTCCGGGTACTTGTTT-GGGG-CCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGAAGAGGAGAAAGAGGCTTGAATTCTGCCAAGACAAGAAGCTTGGATTTGAAGAGTGAAAGAAGAGTACAAGGGTTTAGAAGTAATGTAGTACCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACTGAGACCCTTTTCC-TTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAATCCCTAATAGTAGAATTACTCTTAAAAAAAAAAAAAAA] [+] EMBL AU076113 [GCAAACCNTAACGGCTTAAG ACTTAAGAAGCGANCCGGCCGGAATGCGGCCGNCGGCGGCGGTTGCCG CCGGCTGGAANGGCCAGTCCGGTAC GGCGTGTTATCGAAAGCCGCTGCCGACACGGGNTGCACATCANCAGCGGCCGAGNTCTCGACATCTCCGA GCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTTTGTCAAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCC TTGAGCGCATGAAGAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGG CGTCACTATTTCCGGGTACTTGTTT GGGG CCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGAAGAGGAGAAAGAGGCTTGAATTCTGCCAAGACAAGAAGCTTGGATTTGAAGAGTGAAAGAAGAGTACAAGGGTTTAGAAGTAATGTAGTACCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACTGAGACCCTTTTCC TTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAATCCCTAATAGTAGAATTACTCTTAATAAAAAAAAAAAA] [+] EMBL AU076112 [ AAACCCTAAC GCCTGAG AACTGAGGAGCGAACCGGCGGGATGGCGG CGGCGGCGGCGG TGGCG GCGGCTGGGA GGGCAGTCCGGTAC GGCGTGTTATCGAAAG CGCTGCCGACAC GGCTGCACATCAACAGCGGCCGAGGTCTCGACATCTCCGAGGCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTTTGTCAAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCC TTGAGCGCATGAAGAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGGCCGTCACTATTTCCGGGTACTTGGTT GGGGCCCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGAAGAGGAGAAA ] [+] EMBL AU164020 [ ttgAAGAACTNAAGAAGCGANCCGGCCGGAATGCCGCCGCCGCCGCCGG TGCCGNCGGGCTGGAA GGNCAGTCCGGTACGGGCGTGTTATCGAAAG CGCTGCCGACAC GGCTGCACATCAACAGCGGCCGAGGTCTCGACATCTCCGAGGCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTTTGTCAAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCC TTGAGCGCATGAAGAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGG CGTCACTATTTCCGGGTACTTGTTT GGGG CCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGAAGAGGAGAAAGAGGCTTGAATTCTGCCAAGACAAGAAGCTTGGATTTGAAGAGTGAAAGAAGAGTACAAGGGTTTAGAAGTAATGTAGTACCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACTGAGACCCTTTTCCTTTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAATCCCTAATAGTAGAATTACTCTTAAAAAAAAA ] [+] EMBL OSC2521 [ actgAGGAGCGAACCGGCGGGATGGCGG CGGCGGCGGCGG TGGCG GCGGCTGGGA GGGCAGTCCGGTAC GGCGTGTTATCGAAAG CGCTGCCGACAC GGCTGCACATCAACAGCGGCCGAGGTCTCGACATCTCCGAGGCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTTTGTCAAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCCTTTGAGCGCATGAAGAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGG CGTCACTATTTCCGGGTACTTGTTTNGGGG CC ] [-] EMBL CB636685 [ caGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTTTGTCAAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCTTGATCC TTGAGCGCATGAAGAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGG CGTCACTATTTCCGGGTACTTGTTT GGGG CCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGAAGAGGAGAAAGAGGCTTGAATTCTGCCAAGACAAGAAGCTTGGATTTGAAGAGTGAAAGAAGAAAAAAAGGGTTTAGAAGTAATGTAGTACCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACTGAGACCCTTTTCC TTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTAAGAATCCCTAATAGTAGAATTACTGTTA ] [+] EMBL CB680395 [ GAGCCTGATCC TTGACCGCATGAAGAACATTGGCACACACCATACCAAACATGCGTGGATGGTTGCTGG CGTCACTATTTCCGGGTACTTGTTT GGGG CCGCATTCTTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGAAGAGGAGAAATAGGCTTGAATTCTGCCAATACAACAAGCTTGGATTTGAACAGTGAAAGAAGACTACAAGGGTTTAGAAGTAATGTACTACCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACTGAGACCCTTTTCC TTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTT ] [+] EMBL OSC25652 [ AGAGGCTTGAATTCTGCCAAGACAAGAAGCTTGGATTTGAAGAGTGAAAGAAGAGTACAAGGGTTTAGAAGTAATGTAGTACCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACTGAGACCCTTTTCC TTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAATCCCTAATAGTAGAATTACTCTTAAAAAAANAAgnna ] consensusID : consensus_11907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [GTGTTATCGAAAGCGCTGCCGACACGCTGCACATCAACAGCGCCGAGTCTCGACATCTCCGAGGCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTTTGTCCAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCCTTGAGCGCATGAAGAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGGCGTCACTATTTCCGGGTACTTGTTTGGGGCCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGAAGAGGAGAAAGAGGCTTGAATTCTGCCAGACAGAAGCTTGGATTTGAAGAGTGAAAGAAGAGTACAAGGGTTTAGAAGTAATGTAGTGCCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACTGAGACCCTTTTCCTTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAATCCCTAATAGTAGAATTACTCTTAATATGGTTGTCTTGTTTAAAAAA] [+] EMBL BI797420 [GTGTTATCGAAAGCGCTGCCGACACGCTGCACATCAACAGCGCCGAGTCTCGACATCTCCGAGGCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGATTTTGTCCAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCCTTGAGCGCATGAAGAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGGCGTCACTATTTCCGGGTACTTGTTTGGGGCCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGAAGAGGAGAAAGAGGCTTGAATTCTGCCAGACAGAAGCTTGGATTTGAAGAGTGAAAGAAGAGTACAAGGGTTTAGAAGTAATGTAGTGCCTTCCATCCATGCTTAAATTGTTGACTCAGACCTCCCTTCAACATTTAACTGAGACCCTTTTCCTTTTTTATATATTTCATGTAACTGCAAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAATCCCTAATAGTAGAATTACTCTTAATATGGTTGTCTTGTTTAAAAAA] consensusID : consensus_11907#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [TGAGAACTGAGGAGCGAACCGGCGGGATGGCGGCGGCGGCGGCGGTGGCGGCGGCTGGGAGGGCAGTCCGGTACGGCGTGTTATCGAAAGCGCTGCCGACACGGCTGCACATCAACAGCGGCCGAGGTCTCTACATCTCCGAGGCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGGTGCGTACTCCTCTCTACCGCAAACCCGCTACTTTGTATGCATACTTCGTTCTTTACATTCGATCCGGTTTACCTCAAGAGGAAGGGGATTAAAAAAAAATTCTGTTCCAAATTAAGTCTCTGAATAGTCAAGTCAAGGTTCCCGGCTACTCCTGATCTGGCTGGCTTTCAATTGAGCAAATAGCCTCCTTTCTAATCACCTTAGCTTGTAATCAAATCTTATTCTACCTAGGGCAGCTGCTGCTTAATTTTCTGCTTTTGATCATCCTGTGTGATGAGTAACCAACCAAATGTTAACCAATTAAACTCACTGGAATCGATTGATTGTTCTTTAACTTCCTCAA] [+] EMBL CB636684 [TGAGAACTGAGGAGCGAACCGGCGGGATGGCGGCGGCGGCGGCGGTGGCGGCGGCTGGGAGGGCAGTCCGGTACGGCGTGTTATCGAAAGCGCTGCCGACACGGCTGCACATCAACAGCGGCCGAGGTCTCTACATCTCCGAGGCTGAGGGCCCTCTCGATAGGTACATCCAGGTGTTGATGGTGCGTACTCCTCTCTACCGCAAACCCGCTACTTTGTATGCATACTTCGTTCTTTACATTCGATCCGGTTTACCTCAAGAGGAAGGGGATTAAAAAAAAATTCTGTTCCAAATTAAGTCTCTGAATAGTCAAGTCAAGGTTCCCGGCTACTCCTGATCTGGCTGGCTTTCAATTGAGCAAATAGCCTCCTTTCTAATCACCTTAGCTTGTAATCAAATCTTATTCTACCTAGGGCAGCTGCTGCTTAATTTTCTGCTTTTGATCATCCTGTGTGATGAGTAACCAACCAAATGTTAACCAATTAAACTCACTGGAATCGATTGATTGTTCTTTAACTTCCTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11907#0 GCAAACCNTAACGGCTTAAGACTTAAGAAGCGANCCGGCCGGAATGCGGCCGGCGGCGGC 60 consensus_11907#1 ------------------------------------------------------------ consensus_11907#2 ----------------TGAGAACTGAGGAGCGAACCGGCGGGATGGCGGC-GGCGGCGGC 43 consensus_11907#0 GGTGCCGCCGGCTGGAAGGGCAGTCCGGTACGGCGTGTTATCGAAAGCGCTGCCGACACG 120 consensus_11907#1 ----------------------------------GTGTTATCGAAAGCGCTGCCGACACG 26 consensus_11907#2 GGTGGCGGCGGCTGGGAGGGCAGTCCGGTACGGCGTGTTATCGAAAGCGCTGCCGACACG 103 ************************** consensus_11907#0 GCTGCACATCAACAGCGGCCGAGGTCTCGACATCTCCGAGGCTGAGGGCCCTCTCGATAG 180 consensus_11907#1 -CTGCACATCAACAGCG-CCGAG-TCTCGACATCTCCGAGGCTGAGGGCCCTCTCGATAG 83 consensus_11907#2 GCTGCACATCAACAGCGGCCGAGGTCTCTACATCTCCGAGGCTGAGGGCCCTCTCGATAG 163 **************** ***** **** ******************************* consensus_11907#0 GTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGAT 240 consensus_11907#1 GTACATCCAGGTGTTGATGAATGAAAGAAACCTTGGAAAAGTAAGGAGTATAGAGAAGAT 143 consensus_11907#2 GTACATCCAGGTGTTGATG---GTGCGTACTCCTC------TCTACCGCAAACCCGCTAC 214 ******************* * * * * * * * * * * consensus_11907#0 TTTGTCAAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCCTTGAGCGCATGAA 300 consensus_11907#1 TTTGTCCAAAAGAGATATGGTGAGAGAAAGCTCTGAGAGCCTGATCCTTGAGCGCATGAA 203 consensus_11907#2 TTTGTATGCATACTTCGTTCTTTACATTCGATCCG---GTTTA--CCTCAAGAGGAAGGG 269 ***** * * * * ** * * * *** ** * * * consensus_11907#0 GAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGGCGTCACTATTTCCGG 360 consensus_11907#1 GAAGATTGGCACACACAATACGAAACATGCGTGGATGGTTGCTGGCGTCACTATTTCCGG 263 consensus_11907#2 GATTAAAAAAAAATTCTGTTCCAAAT-TAAGTCTCTGAATAGTCAAGTCAAGGTTCCCGG 328 ** * * * * * * *** * ** ** * * **** ** **** consensus_11907#0 GTACTTGTTTGGGGCCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGA 420 consensus_11907#1 GTACTTGTTTGGGGCCGCATTCGTTGCCCTTCTTACAGAGTCCCAACTGCCAAAGCGTGA 323 consensus_11907#2 CTACTCCT----GATCTGGCTGGCTTTCAATTGAGCAAATAGCCTCCTTTCTAATCACCT 384 **** * * * * * * * * ** * ** ** * ** * consensus_11907#0 AGAGGAGAAAGAGGCTTGAATTCTGCCAAGACAAGAAGCTTGGATTTGAAGAGTGAAAGA 480 consensus_11907#1 AGAGGAGAAAGAGGCTTGAATTCTGCCA-GACA-GAAGCTTGGATTTGAAGAGTGAAAGA 381 consensus_11907#2 TAGCTTGTAATCAAATCTTATTCTACCTAGG---GCAGCTGCTGCTTAATTTTCTGCTTT 441 * ** * ***** ** * * **** ** * consensus_11907#0 AGAGTACAAGGGTTTAGAAGTAATGTAGTACCTTCCATCCATGCTTAAATTGTTGACTCA 540 consensus_11907#1 AGAGTACAAGGGTTTAGAAGTAATGTAGTGCCTTCCATCCATGCTTAAATTGTTGACTCA 441 consensus_11907#2 TGATCATCCTGTGTGATGAGTAA-----------CCAACCAAATGTTAACC----AATTA 486 ** * * * * ***** *** *** * ** * * * consensus_11907#0 GACCTCCCTTCAACATTTAACTGAGACCCTTTTCCTTTTTTATATATTTCATGTAACTGC 600 consensus_11907#1 GACCTCCCTTCAACATTTAACTGAGACCCTTTTCCTTTTTTATATATTTCATGTAACTGC 501 consensus_11907#2 AACTCACTGGAATCGATTGATTG---TTCTTTAACTTCCTCAA----------------- 526 ** * * * ** * ** **** *** * * consensus_11907#0 AAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAATCCCTAATAGTAGAATTA 660 consensus_11907#1 AAAGTATGCTGTGCAAATGCTTACCGGTGTTTCCTTTTCGAATCCCTAATAGTAGAATTA 561 consensus_11907#2 ------------------------------------------------------------ consensus_11907#0 CTCTTAAAAAAAAA---------AAAAAA 680 consensus_11907#1 CTCTTAATATGGTTGTCTTGTTTAAAAAA 590 consensus_11907#2 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||