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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 721 fasta sequence
[TTTTTTTTTTTTTTTTTTTTATCTTGAAATTGGCATTTATGTTCCATTATTATAATGCACAGTATGGGGGTTCCATTCTGATACATCATACATTCACGT-GGTCTTCACAATGCTACATAAACCTTC-GC-GGACAAGTTTTGAAAATGGCTGAATCAAGGCAAAACATAAGCACGATTGATTCCCAAAGAGAAGCAGATTAATTTGCTACAACTTGGATGATCTCACTTGGGCGATAAGCTGCCTTCTCAGAATCTTTCCTGAAGCTGATTT-GGGCAC-GCTGCCCACAAAGGTAACTCTCTTCAATCTTTTGTAGTACGCCACCTGTTTTTCAATAAATTTTTGGACATCAACTTCTGTCAATGAACTGTCAGGTGACCGAACAACATAGGCAATGGGAACCTCCCCAGCTTTAGCATCAGGAAACGGGATAACAACAGCATCTAGAATCTCTGGATGAGATAGAAGTAACCCTTCAAGCTCGGCAGGTGCAATCTGGAAACCTTTGTACTTAATCAGTTCTTTAAGTCTATCAACAACAAAAAGCTGGCCTCCTCCGTCGAAGTATCCAAGATCACCAGTGTGCAACCACCCTTGCTTGATTGTAAATTCAGTAGCTTGCACATTGTTGAAATACCCTTGCATTACATATGGCCCTCGAACACAAAATTTCTCCTACTTGATTGGGCGGTAGATGTACACATGTCTTTATGTCGACAATCTT]
[-] EMBL AU058109 [TTTTTTTTTTTTTTTTTGTTATCTTGAAATTGGCATTTATGTTCCATTATTATAATGCACAGTATGGGGGTTCCATTCTGATACATCATACATTCACGN GGTCTTCACAATGNTACATAAACCTTC GC GGACAAGTTTTGAAAATGGCTGAATCAAGGCAAAACATAAGCACGNTTGTTTCCCAAAGAGAAGCAGNTTAATTTGCTACAACTTGGATGATCTCACTTGGGCGATAAGCTGCCTTCTCAGAATCTTTCCTGAAGCTGATTTGGGGCAC GCTGCCCACAAAGGTAACTC ]
[-] EMBL AU081549 [ TTTTTTTATCTTGAAATTGGCATTTATGTTCCATTATTATAATGCACAGTATGGGGGTTCCATTCTGATACATCATACATTCACGT GGTCTTCACAATGCTACATAAACCTTC GC GGACAAGTTTTGAAAATGGCTGAATCAAGGCAAAACATAAGCACGATTGATTCCCAAAGAGAAGCAGATTAATTTGCTACAACTTGGATGATCTCACTTGGGCGATAAGCTGCCTTCTCAGAATCTTTCCTGAAGCTGATTT GGGCAC GCTGCCCACAAAGGTAACTCTCTTCAATCTTTTGTAGTACGCCACCTGTTTTTCAATAAATTTTTGGACATCAACTTCTGTCAATGAACTGTCAGGTGACCGAACAACATAGGCAATGGGAACCTCCCCAGCTTTAGCATCAGGAAACGGGATAACAACAGCATCTAGAATCTCTGGATGAGATAGAAGTAACCCTTCAAGCTCGGCAGGTGCAATCTGGAAACCTTT ]
[-] EMBL AU162945 [ TTTTTATCTTGAAATTGGCATTTATGTTCCATTATTATAATGCACAGTATGGGGGGTCCA TCTGATACATCCTACATTCACGTGGGTCTTCACAATGCTACATAAACCTTCGGG GGACAAATTTTNGAAATGGg ]
[-] EMBL AU031028 [ TTTTTATNNTGAAATNGGCATTTATGTTCCATTATTATAATGCACAGTATGGGGGTTCCATTCTGATACATCATACATTCACGT GGTCTTCACAATGCTACATAAACCTTC GC GGACAAGTTTTGAAAATGGCTGAATCAAGGCAAAACATAAGCACGATTGATTCCCAAAGAGAAGCAGATTAATTTGCTACAACTTGGATGATCTCACTTGGGCGATAAGCTGCCTTCTCAGAATCTTTCCTGAAGCTGATTT GGGCAC GCTGCCCACAAAGGTAACTCTCTTCAATCTTTTGTAGTACGCCACCTGTTTTTCAATAAATTTTTGGACATCAACTTCTGTCAATGAACTGTCAGGTGACCGAACAACATAGGCAATGGGAACCNCCCCAGCTTTAGCATCAGGAAACGGGATAACAACAGCATCTAGAATCTCTGGATGAGATAGAAGTAACCCTTCAAGCTCGGCAGGNGCAATCTGGAcg ]
[+] EMBL AU163038 [ GAAATTGGCATTTATGTTCCATTATTATAATGCACAGTATGGGGGTTCCATTCTGATACATCATACATTCACGT GGTCTTCACAATGCTACATAAACCTTC GC GGACAAGTTTTGAAAATGGCTGAATCAAGGCAAAACATAAGCACGATTGATTCCCAAAGAGAAGCAGATTAATTTGCTACAACTTGGATGATCTCACTTGGGCGATAAGCTGCCTTCTCAGAATCTTTCCTGAAGCTGATTT GGGCAC GCTGCCCACAAAGGTAACTCTCTTCAATCTTTTGTAGTACGCCACCTGTTTTTCAATAAATTTTTGGACATCAACTTCTGTCAATGAACTGTCANGTGACCGAACAACATAGGgc ]
[+] EMBL OSA420708 [ TTATGTT CATTATTATAATGCACAGTATGGGGGTTCCATTCTGATACATCATACATTCACGT GGTCTTCACAATGCTACATAAACCTTC GC GGACAAG TTTGAAAATGGCTGAATCAAGGCAAAACATAAGCACGATTGATTCCCAAAGAGAAGCAGATTAATTTGCTACAACTTGGATGATCTCACTTGGGCGATAAGCTGCCTTCTCAGAATCTTTCCTGAAGCTGATTT GGGCAC GCTGCCCACAAAGGTAACTCTCTTCAATCTTTTGTAGTACGCCACCTGTTTTTCAATAAATTTTTGGACATCAACTTCTGTCAATGAACTGTCAGGTGACCGAACAACATAGGCAATGGGAACCTCCCCAGCTTTAGCATCAGGAAACGGGATAACAACAGCATCTAGAATCTCTGGATGAGATAGAAGTAACCCTTCAAGCTCAGCAGGTGCAATCTGGAAACCTTTGTACTTAATCAGTTCTTTAAGTCTATCAACAACAAAAAGCTGGCCTCCTCCGTCGAAGTATCCAAGATCACCAGTGTGCAACCACCCTTGCTTGATTGTAAATTCAGTAGCTTGCACATTGTTGAAATACCCTTGCATTACATATGGCCCTCGAACACAAAATTTCTCCTACTTGATTGGGCGGTAGATGTACACATGTCTTTATGTCGACAATCTT]
[+] EMBL OSA312758 [ TAATGCACAGTATGGGGGTTCCATTCTGATACATCATACATTCACGT GGTCTTCACAATGCTACATAAACCTTC GC GGATAAGTTTTGAAAATGGCTGAATCAAGGCAAAACATAAGCACGATTGATTCCCAAAGAGAAGCAGATTAATTTGCTACAACTTGGATGATCTCACTTGGGCGATAAGCTGCCTTCTCAGAATCTTTCCTGAAGCTGATTT GGGCAC GCTGCCCACAAAGGTAACTCTC ]
[-] EMBL AU081548 [ TGGGGGTTCCATTNTGATACATCATACATTCACNT GGTCTTCACAATGCTACATAAACCNTC GCGGGACAAGTTTTGAAAATGGCTGAATCAAGGCAAAACATAAGCNCGATTGATTCCCANAGAGAAGCAGATTAATTTGCTACANCTTGGATGATCTCACTTGGGCGATAAGCTGCCTTCTCAGAATCTTTCCTGAAGCTGATTT GGGCACGGCTGCCCACAAAGGTAACTCTCTTCAATCTTTTGTAGTACGCCACCTGTTTTTCAATAAATTTTTGGACATCAACTTCTGTCAATGAACTGTCAGGTGACCGAACAACATAGGCAATGGGAACCTCCCCAGCTTTAGCATCAGGAAACGGGATAACAACAGCATCTAGAATCTCTGGATGAGATAGAAGTAACCCTTCAAGCTCGGCAGGTGCAATCTGGAAACCTTTG ]
[-] EMBL AU031027 [ CCA TCTGATACATCATACATCCACGT GGTCTTCACAATGCTACAT AACCTTC GC GGACAAGTTTGGAAAATGGCTGATTCAAGGCAAAACATAAGCACGATTGATTCCCAAAGAGAAGCAGATTNATTTGCTACAACTTGGATGATCTCACTTGGGCGATAAGCTGCCTTCTCAGAATCTTTCCTGAAGCTGATTT GGGCAC GCTGCCCACAAAGGTAACTCTCTTCAATCTTTTGTAGTACGCCACCTGTTTTTCAATAAATTTTTGGACATCAACTTCTGTCAATGAACTGTCAGGTGACCGAACAACATAGGCAATGGGAACCTCCCCAGCTTTAGCATCAGGAAACGGGATAACAACAGCATCTAGAATCTCTGGATGAGATAGAAGTAACCCTTCAAGCTCGGCNGGTG ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||