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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11937#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1329 fasta sequence
[TTCTACATAGTAAAATCTAATTGTTTTATTTACTAGAATGATAAAATTTGAGTAAGCTTATACAAATATGCACATGTATATCCACAAAACAACTATTCAAAAACCGAACATGTATAGAAAAAATATGCCCAAACTAAGTAAGTTGTTATATCACTTCTTAAGTTTGTACAAAATCTTACCCATCTTATAAGTTGTTGCACCTATATGTTTATTTATTAACTTCTTGGACTAAATTGCACTCATATACGAAGTTTTTAAGTGTGTGATACTTGAGGGGACAACCTTCCCTCGCGTCGTCCTCCCCCAGGGGCGGCACGGGAGGCGACGACTCGGCCACCCCTTCTCTCTCCCCCACCTCCCTCCTCCGCCTCGCCGCTGCCCGAGTGGCCGCCGGCAAAGCCGCGCGGCCACA-AGGACGGCGGCGGCGGGGCTCCTCTCTCGCGCCACTCTTAGGAGACCGGGGGTCTCTCCGGAGAGGCGGCGGCGGTAAACCGCCAGATTCGCGCCGCTTCGGCCGGATCTGGCGGGGCGGCGATGGGCGACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCAGCGGCCGATGGCGGCGGGGTTGGAGACGGGCGGCGGTGGGGTGAACAGATCCGGCGGCGGCGCGTC-TGGATCCGGCGGTGGCGCGACGTCCGGTGGTGTTTGGAGCGTGCGGCGCCGGCAGCCAACCTCGCCCGTGGCTGGCGATGGTGGTGAAAGGAGGACGGCCGATTTGGGCTTTAGGTCTAGATCCGGCGCGTTCTCAGTCGGGGTCAAGGGTGGTGCAGAATCCGGTCATTGTGCAGGTGGTGTCCATAGTGCAGGTACCCTTCGGTGTGCAGGAGGCATTTGGAAGCTTCCGTTTTGGATGCTTTGGTTGACAGGGTCTCCGAGGTGAAAACCTTGCTCCGCTTCTGGTGCTACTAACGGCAGCGCCCTCGGACGCCGTTCACCTTCTTGAAGGCGTTGCGTTTGGAGCCCTCGTTTCAACTCCACTTCAAGGAAACTCTTCGGGTGAAAACCTTGGATTCGTTAGGATCGGACGTTGTCGCCGTTCTGTCAGCGTAACCTTCTTGAAGGATTCGTTCTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTGGTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTAAGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATTGCAGGAGCTCCCTGCCTGTCCCCTNGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AK105215 [TTCTACATAGTAAAATCTAATTGTTTTATTTACTAGAATGATAAAATTTGAGTAAGCTTATACAAATATGCACATGTATATCCACAAAACAACTATTCAAAAACCGAACATGTATAGAAAAAATATGCCCAAACTAAGTAAGTTGTTATATCACTTCTTAAGTTTGTACAAAATCTTACCCATCTTATAAGTTGTTGCACCTATATGTTTATTTATTAACTTCTTGGACTAAATTGCACTCATATACGAAGTTTTTAAGTGTGTGATACTTGAGGGGACAACCTTCCCTCGCGTCGTCCTCCCCCAGGGGCGGCACGGGAGGCGACGACTCGGCCACCCCTTCTCTCTCCCCCACCTCCCTCCTCCGCCTCGCCGCTGCCCGAGTGGCCGCCGGCAAAGCCGCGCGGCCACA AGGACGGCGGCGGCGGGGCTCCTCTCTCGCGCCACTCTTAGGAGACCGGGGGTCTCTCCGGAGAGGCGGCGGCGGTAAACCGCCAGATTCGCGCCGCTTCGGCCGGATCTGGCGGGGCGGCGATGGGCGACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCAGCGGCCGATGGCGGCGGGGTTGGAGACGGGCGGCGGTGGGGTGAACAGATCCGGCGGCGGCGCGTC TGGATCCGGCGGTGGCGCGACGTCCGGTGGTGTTTGGAGCGTGCGGCGCCGGCAGCCAACCTCGCCCGTGGCTGGCGATGGTGGTGAAAGGAGGACGGCCGATTTG ]
[+] EMBL AK061361 [ GTTTTTAAGTGTGTGATACTTGAGGGGACAACCTTCCCTCGCGTCGTCCTCCCCCAGGGGCGGCACGGGAGGCGACGACTCGGCCACCCCTTCTCTCTCCCCCACCTCCCTCCTCCGCCTCGCCGCTGCCCGAGTGGCCGCCGGCAAAGCCGCGCGGCCACA AGGACGGCGGCGGCGGGGCTCCTCTCTCGCGCCACTCTTAGGAGACCGGGGGTCTCTCCGGAGAGGCGGCGGCGGTAAACCGCCAGATTCGCGCCGCTTCGGCCGGATCTGGCGGGGCGGCGATGGGCGACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCAGCGGCCGATGGCGGCGGGGTTGGAGACGGGCGGCGGTGGGGTGAACAGATCCGGCGGCGGCGCGTC TGGATCCGGCGGTGGCGCGACGTCCGGTGGTGTTTGGAGCGTGCGGCGCCGGCAGCCAACCTCGCCCGTGGCTGGCGATGGTGGTGAAAGGAGGACGGCCGATTTGGGCTTTAGGTCTAGATCCGGCGCGTTCTCAGTCGGGGTCAAGGGTGGTGCAGAATCCGGTCATTGTGCAGGTGGTGTCCATAGTGCAGGTACCCTTCGGTGTGCAGGAGGCATTTGGAAGCTTCCGTTTTGGATGCTTTGGTTGACAGGGTCTCCGAGGTGAAAACCTTGCTCCGCTTCTGGTGCTACTAACGGCAGCGCCCTCGGACGCCGTTCACCTTCTTGAAGGCGTTGCGTTTGGAGCCCTCGTTTCAACTCCACTTCAAGGAAACTCTTCGGGTGAAAACCTTGGATTCGTTAGGATCGGACGTTGTCGCCGTTCTGTCAGCGTAACCTTCTTGAAGGATTCGTTCTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTGGTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTAAGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATTGCAGGAGCTCCCTGCC ]
[+] EMBL AK103354 [ GCGTCGTCCTCCCCCAGGGGCGGCACGGGAGGCGACGACTCGGCCACCCCTTCTCTCTCCCCCACCTCCCTCCTCCGCCTCGCCGCTGCCCGAGTGGCCGCCGGCAAAGCCGCGCGGCCACA AGGACGGCGGCGGCGGGGCTCCTCTCTCGCGCCACTCTTAGGAGACCGGGGGTCTCTCCGGAGAGGCGGCGGCGGTAAACCGCCAGATTCGCGCCGCTTCGGCCGGATCTGGCGGGGCGGCGATGGGCGACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCAGCGGCCGATGGCGGCGGGGTTGGAGACGGGCGGCGGTGGGGTGAACAGATCCGGCGGCGGCGCGTC TGGATCCGGCGGTGGCGCGACGTCCGGTGGTGTTTGGAGCGTGCGGCGCCGGCAGCCAACCTCGCCCGTGGCTGGCGATGGTGGTGAAAGGAGGACGGCCGATTTGGGCTTTAGGTCTAGATCCGGCGCGTTCTCAGTCGGGGTCAAGGGTGGTGCAGAATCCGGTCATTGTGCAGGTGGTGTCCATAGTGCAGGTACCCTTCGGTGTGCAGGAGGCATTTGGAAGCTTCCGTTTTGGATGCTTTGGTTGACAGGGTCTCCGAGGTGAAAACCTTGCTCCGCTTCTGGTGCTACTAACGGCAGCGCCCTCGGACGCCGTTCACCTTCTTGAAGGCGTTGCGTTTGGAGCCCTCGTTTCAACTCCACTTCAAGGAAACTCTTCGGGTGAAAACCTTGGATTCGTTAGGATCGGACGTTGTCGCCGTTCTGTCAGCGTAACCTTCTTGAAGGATTCGTTCTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTGGTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTAAGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATTGCAGGAGCTCCCTGCC ]
[+] EMBL CB671237 [ TCCTCCCCCAGGGGCGGCACGGGAGGCGACGACTCGGCCACCCCTTCTCTCTCCCCCACCTCCCTCCTCCGCCTCGCCGCTGCCCGAGTGGCCGCCGGCAAAGCCGCGCGGCCACA AGGACGGCGGCGGCGGGGCTCCTCTCTCGCGCCACTCTTAGGAGACCGGGGGTCTCTCCGGAGAGGCGGCGGCGGTAAACCGCCAGATTCGCGCCGCTTCGGCCGGATCTGGCGGGGCGGCGATGGGCGACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCAGCGGCCGATGGCGGCGGGGTTGGAGACGGGCGGCGGTGGGGTGAACAGATCCGGCGGCGGCGCGTC TGGATCCGGCGGTGGCGCGACGTCCGGTGGTGTTTGGAGCGTGCGGCGCCGGCAGCCAACCTCGCCCGTGGCTGGCGATGGTGGTGAAAGGAGGACGGCCGATTTGGGCTTTAGGTCTAGATCCGGCGCGTTCTCAGTCGGGGTCAAGGGTGGTGCAGAATCCGGTCATTGTGCAGGTGGTGTCCATAGTGCAGGTACCCTTCGGTGTGCAGGAGGCATTTGGAAGCTTCCGTTTTGGATGCTTTGGTTGACAGGGTCTCCGAGGTGAAAACCTTGCTCCGCTTCTGGTGCTACTAACGGCAGCGCCCTCGGACGCCGTTCACCTTCTTGAAGGCGTTGCGTTTGGAGCCCTCGTTTCAACTCCACTTCAAGGAAACTCTTCGGGTGAAAACCTTGGATTCGTTAGGAT ]
[+] EMBL C91727 [ CTCCCCCAGGGGCGGCACGGGAGGCGACGACTCGGCCACCCCTTCTCTCTCCCCCACCTCCCTCCTCCGCCTCGCCGCTGCCCGAGTGGCCGCCGGCAAAGCCGCGCGGCCACANAGGACGGCGGCGGCGGGGCTCCTCTCTCGCGCCACTCTTAGGAGACCGGGGGTCTCTCCGGAGAGGCGGCGGCGGTAAACNGCCAGATTCGCGCCGCTTCGGCCGGATCTGGCGGGGCGGCGATGGGCGACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCA CGGCCGATGGCGGCGGGGTTGGAGACGGGCGGCGGTGGGGTGAACAGATCCGGCGGCGGCGCGTCTTGGATCCGGCGGTTGCGCGACGTCCGGTGGTGTTTTGAGCGTTCGGCGCCGGCAACCAANCTTGCCCGTTGNTTGCGATTGTTGTta ]
[+] EMBL AU173115 [ CGGCACGGGAGGCGACNACTCGGCCACCCCTTCTCTCTCCCCCACCTCCCTCCTCCGCCTCGCCGCTGCCCGAGTGGCCGCCGGCAAAGCCGCGCGGCCACA AGGACGGCGGCGGCGGGGCTCCTCTCTCGCGCCACTCTTAGGAGACCGGGGGTCTCTCCGGAGAGGCGGCGGCGGTAAACCGCCAGATTCGCGCCGCTTCGGCCGGATCTGGCGGNGCGGCGATGGGCGACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCAGCGGCCGATGGCGGNGGGGTTGG ]
[-] EMBL CB671238 [ TCGCGCCGCTTCGGCCGGATCTGGCGGGGCGGCGATGGGCGACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCAGCGGCCGATGGCGGCGGGGTTGGAGACGGGCGGCGGTGGGGTGAACAGATCCGGCGGCGGCGCGTC TGGATCCGGCGGTGGCGCGACGTCCGGTGGTGTTTGGAGCGTGCGGCGCCGGCAGCCAACCTCGCCCGTGGCTGGCGATGGTGGTGAAAGGAGGACGGCCGATTTGGGCTTTAGGTCTAGATCCGGCGCGTTCTCAGTCGGGGTCAAGGGTGGTGCAGAATCCGGTCATTGTGCAGGTGGTGTCCATAGTGCAGGTACCCTTCGGTGTGCAGGAGGCATTTGGAAGCTTCCGTTTTGGATGCTTTGGTTGACAGGGTCTCCGAGGTGAAAACCTTGCTCCGCTTCTGGTGCTACTAACGGCAGCGCCCTCGGACGCCGTTCACCTTCTTGAAGGCGTTGCGTTTGGAGCCCTCGTTTCAACTCCACTTCAAGGAAACTCTTCGGGTGAAAACCTTGGATTCGTTAGGATCGGACGTTGTCGCCGTTCTGTCAGCGTAACCTTCTTGAAGGATTCGTTCTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTGGTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTAAGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATTGCAGGAGCTCCCTGCCT ]
[+] EMBL AU075446 [ GTTCTAGGNGTTTTTTNCCTTGTTGGACAATTGTCATTTGGTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTAAGGTTTTTGGGTCCGGTTTTCCTTNTAAACTGGATCAACTCTCTTTTTNTATNGTAAATTGCAGGNGCTCCCTGCNTGTCCCCTNGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11937#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence
[TCGGGTGAAAACCTTGGATTCGTTAGGATCGGNTGTTGTCGCCGTTCTGTCAGCGAATCCTTCAAGAAGGTTACGCTGACAGAACGGGACAACTAAACCTTCTTGAAGGATTCGTTCTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTGGTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTAAGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATTGCAGGAGCTCCCTGCCTGTCCCCTCGAA]
[+] EMBL AU075445 [TCGGGTGAAAACCTTGGATTCGTTAGGATCGGNTGTTGTCGCCGTTCTGTCAGCGAATCCTTCAAGAAGGTTACGCTGACAGAACGGGACAACTAAACCTTCTTGAAGGATTCGTTCTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTGGTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTAAGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATTGCAGGAGCTCCCTGCCTGTCCCCTCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11937#0 TTCTACATAGTAAAATCTAATTGTTTTATTTACTAGAATGATAAAATTTGAGTAAGCTTA 60
consensus_11937#1 ------------------------------------------------------------
consensus_11937#0 TACAAATATGCACATGTATATCCACAAAACAACTATTCAAAAACCGAACATGTATAGAAA 120
consensus_11937#1 ------------------------------------------------------------
consensus_11937#0 AAATATGCCCAAACTAAGTAAGTTGTTATATCACTTCTTAAGTTTGTACAAAATCTTACC 180
consensus_11937#1 ------------------------------------------------------------
consensus_11937#0 CATCTTATAAGTTGTTGCACCTATATGTTTATTTATTAACTTCTTGGACTAAATTGCACT 240
consensus_11937#1 ------------------------------------------------------------
consensus_11937#0 CATATACGAAGTTTTTAAGTGTGTGATACTTGAGGGGACAACCTTCCCTCGCGTCGTCCT 300
consensus_11937#1 ------------------------------------------------------------
consensus_11937#0 CCCCCAGGGGCGGCACGGGAGGCGACGACTCGGCCACCCCTTCTCTCTCCCCCACCTCCC 360
consensus_11937#1 ------------------------------------------------------------
consensus_11937#0 TCCTCCGCCTCGCCGCTGCCCGAGTGGCCGCCGGCAAAGCCGCGCGGCCACAAGGACGGC 420
consensus_11937#1 ------------------------------------------------------------
consensus_11937#0 GGCGGCGGGGCTCCTCTCTCGCGCCACTCTTAGGAGACCGGGGGTCTCTCCGGAGAGGCG 480
consensus_11937#1 ------------------------------------------------------------
consensus_11937#0 GCGGCGGTAAACCGCCAGATTCGCGCCGCTTCGGCCGGATCTGGCGGGGCGGCGATGGGC 540
consensus_11937#1 ------------------------------------------------------------
consensus_11937#0 GACGGTGGCGGGGATGGAGATGGCGGCGGTAGTGGCGGCAGCGGCCGATGGCGGCGGGGT 600
consensus_11937#1 ------------------------------------------------------------
consensus_11937#0 TGGAGACGGGCGGCGGTGGGGTGAACAGATCCGGCGGCGGCGCGTCTGGATCCGGCGGTG 660
consensus_11937#1 ------------------------------------------------------------
consensus_11937#0 GCGCGACGTCCGGTGGTGTTTGGAGCGTGCGGCGCCGGCAGCCAACCTCGCCCGTGGCTG 720
consensus_11937#1 ------------------------------------------------------------
consensus_11937#0 GCGATGGTGGTGAAAGGAGGACGGCCGATTTGGGCTTTAGGTCTAGATCCGGCGCGTTCT 780
consensus_11937#1 ------------------------------------------------------------
consensus_11937#0 CAGTCGGGGTCAAGGGTGGTGCAGAATCCGGTCATTGTGCAGGTGGTGTCCATAGTGCAG 840
consensus_11937#1 ------------------------------------------------------------
consensus_11937#0 GTACCCTTCGGTGTGCAGGAGGCATTTGGAAGCTTCCGTTTTGGATGCTTTGGTTGACAG 900
consensus_11937#1 ------------------------------------------------------------
consensus_11937#0 GGTCTCCGAGGTGAAAACCTTGCTCCGCTTCTGGTGCTACTAACGGCAGCGCCCTCGGAC 960
consensus_11937#1 ------------------------------------------------------------
consensus_11937#0 GCCGTTCACCTTCTTGAAGGCGTTGCGTTTGGAGCCCTCGTTTCAACTCCACTTCAAGGA 1020
consensus_11937#1 ---------------TCGGGTGAAAACCTTGGA---TTCGTTAGGATCGGNTGTTGTCGC 42
** * ***** ***** * * *
consensus_11937#0 AACTCTTCGGGTGAAAACCTTGGATTCGTTAGGATCGGACGTTGTCGCCGTTCTGTCAGC 1080
consensus_11937#1 CGTTCTGTCAGCGAATCCTTCAAGAAGGTTACGCT--GACAGAACGG-------GACAAC 93
*** * *** * * **** * * *** * * ** *
consensus_11937#0 GTAACCTTCTTGAAGGATTCGTTCTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTG 1140
consensus_11937#1 TAAACCTTCTTGAAGGATTCGTTCTAGGAGTTTTTTTCCTTGTTGGACAATTGTCATTTG 153
**********************************************************
consensus_11937#0 GTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTA 1200
consensus_11937#1 GTTCAGTTTTGTCAATGCCGGGTTTTCGCCAGTTTTCCTTTAATTAACTGTGCAGTTGTA 213
************************************************************
consensus_11937#0 AGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATT 1260
consensus_11937#1 AGGTTTTTGGGTCCGGTTTTCCTTATAAACTGGATCAACTCTCTTTTTCTATAGTAAATT 273
************************************************************
consensus_11937#0 GCAGGAGCTCCCTGCCTGTCCCCTNGNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1320
consensus_11937#1 GCAGGAGCTCCCTGCCTGTCCCCTCGAA-------------------------------- 301
************************ * *
consensus_11937#0 AAAAAAAAA 1329
consensus_11937#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||