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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 925 fasta sequence
[CACCCGACTTCTCCTTCTCCTCTTCCCCCGCCGTCGTGGAAGGGAGGAGAGCGGCGGCGCCGGCCACCGGCCACCGGAAGGGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCGGCGATGTTGTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTGTAGGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACGAAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGCAGTCAGAGCAAGGAGAAGATCTCTGTAACATTTGTGAACAAGGATGGCACAGAGCAGACAATCAGTGTCCCTGTTGGAATGTCCATCTTAGAAGCTGCTCATGAAAATGACATCGAACTTGAAGGAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGGATGTAAATTATTATAATAAGCTAGAAGA-TCCAACAGATGAAGAAAATGATATGCTTGACCTTGCATTT-GGACTTACAGAAACGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGACTGGCATTACCAGCAGCTACACGAAACTTTGCGGTGGATGGCTTTGTACCAAAACCACACT-AAAAGACTGATAACTGAGACTGAGAAGTGAG-AACACAGGTTCTTACACAGCATCATCAATTTTGTAGCCCAACACTTGTAACTTAAACAACAGCCTTTGGTGTTATGAGGCTTTTGTGTTCCAGAGAGGATTTGTTCATTGTTGAGCTCCTCGGTTAGTTACGGAAATTATTATTTCATCAGTGCCACACTACCACCGGGTGAATAAAATGCTTCTTCTGCATGTTTATTGGCTTATAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA766397 [CACCCGACTTCTCCTTCTCCTCTTCCCCCGCCGTCGTGGAAGGGAGGAGAGCGGCGGCGCCGGCCACCGGCCACCGGAAGGGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCGGCGATGTTGTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCT GGGAATTTGGCAAGCGGTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCANCGNANAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGCAGNCANANCAAGGAGAAGATCTCTGTAACATTTGTGAACAAGGATGGCACAGAGCAGACAATCAGTGTCCCTGTTGGAATGTCCATCTTAGAAGCTGCTCATGAAAATGACATCGAACTTGAAGGAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGGATGTAAATTATTATAATAAGCTAGAAGATTCCAACAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGGACTTACAGAAA ]
[+] EMBL AK073241 [ CCGACTTCTCCTTCTCCTCTTCCCCCGCCGTCGTGGAAGGGAGGAGAGCGGCGGCGCCGGCCACCGGCCACCGGAAGGGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCGGCGATGTTGTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTGTAGGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACGAAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGCAGTCAGAGCAAGGAGAAGATCTCTGTAACATTTGTGAACAAGGATGGCACAGAGCAGACAATCAGTGTCCCTGTTGGAATGTCCATCTTAGAAGCTGCTCATGAAAATGACATCGAACTTGAAGGAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGGATGTAAATTATTATAATAAGCTAGAAGA TCCAACAGATGAAGAAAATGATATGCTTGACCTTGCATTT GGACTTACAGAAACGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGACTGGCATTACCAGCAGCTACACGAAACTTTGCGGTGGATGGCTTTGTACCAAAACCACACT AAAAGACTGATAACTGAGACTGAGAAGTGAG AACACAGGTTCTTACACAGCATCATCAATTTTGTAGCCCAACACTTGTAACTTAAACAACAGCCTTTGGTGTTATGAGGCTTTTGTGTTCCAGAGAGGATTTGTTCATTGTTGAGCTCCTCGGTTAGTTACGGAAATTATTATTTCATCAGTGCCACACTACCACCGGGTGAATAAAATG ]
[+] EMBL CF308374 [ CGACTTCTCCTTCTCCTCTTCCCCCGCCGTCGTGGAAGGGAGGAGAGCGGCGGCGCCGGCCACCGGCCACCGGAAGGGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCGGCGATGTTGTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTGTAGGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACGAAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGCAGTCAGAGCAAGGAGAAGATCTCTGTAACATTTGTGAACAAGGATGGCACAGAGCAGACAATCAGTGTCCCTGTTGGAATGTCCATCTTAGAAGCTGCTCATGAAAATGACATCGAACTTGAAGGAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGGATGTAAATTATTATAATAAGCTAGAAGA TCCAACAGATGAAGAAAATGATATGCTTGACCTTGCATTT GGACTTACAGAAACGTCTCGTCTTGGCT ]
[+] EMBL AU108574 [ tGCAGTAGGGAATTTGGCAAGCAGTACAACCAGCTATTANCGAGGTCAACTCAGCCGACGTTTTGTCCCAACGAAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGCAGTCAGAGCAAGGAGAAGATCTCTGTAACATTTGTGAACAAGGATGGCACAGAGCAGACAATCAGTGTCCCTGTTGGAATGTCCATCTTAGAAGCTGCTCATGAAAATGACATCGAACTTGAAGGAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGGATGTAAATTATTATAATAAGCTAGAAGA TCCAACAGATGAAGAAAATGATATGCTTGACCTTGCATTT GGACTTACAGAAACGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGACTGGCATTACCAGCAGCTACACGAAACTTTGCGGTGGATGGCTTTGTACCAAAACCACACT AAAAGACTGATAACTGAGACTGAGAAGTGAG AACACAGGTTCTTACACAGCATCATCAATTTTGTAGCCCAACACTTGTAACTTAAACAACAGCCTTTGGTGTTATGAGGCTTTTGTGTTCCAGAGAGGATTTGTTCATTGTTGAGCTCCTCGGTTAGTTACGGAAATTATTATTTCATCAGTGCCACACTAaaaaaaaaa ]
[+] EMBL CA305774 [ TTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACGAAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGCAGTCAGAGCAAGGAGAAGATCTCTGTAACATTTGTGAACAAGGATGGCACAGAGCAGACAATCAGTGTCCCTGTTGGAATGTCCATCTTAGAAGCTGCTCATGAAAATGACATCGAACTTGAAGGAGCATGTGAAGGTTCACCTGCGTGTTCAACCTGTCATGTCATAGTTATGGATGTAAATTATTATAATAAGCTAGAAGA TCCAACAGATGAAGAAAATGATATGCTTGACCTTGCATTT GGACTTACAGAAACGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGACTGGCATTACCAGCAGCTACACGAAACTTTG ]
[+] EMBL BF430897 [ GAGCAAGGAGAAGATCTCTGTAACATTTGTGAACAAGGATGGCACAGAGCAGACAATCAGTGTCCCTGTTGGAATGTCCATCTTAGAAGCTGCTCATGAAAATGACATCGAACTTGAAGGAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGGATGTAAATTATTATAATAAGCTAGAAGA TCCAACAGATGAAGAAAATGATATGCTTGACCTTGCATTT GGACTTACAGAAACGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGACTGGCATTACCAGCAGCTACACGAAACTTTGCGGTGGATGGCTTTGTACCAAAACCACACTAAAAAGACTGATAACTGAGACTGAGAAGTGAGTAGCACAGGTTCTTACACAGCATCATCAATTTTGTAGCCCAACACTTGTAACTTAAACAACAGCCTTTGGTGTTATGAGGCTTTTGTGTTCCAGAGAGGATTTGTTCATTGTTGAGCTCCTCGGTTAGTTAC ]
[-] EMBL CF308375 [ ATCAGTGTCCCTGTTGGAATGTCCATCTTAGAAGCTGCTCATGAAAATGACATCGAACTTGAAGGAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGGATGTAAATTATTATAATAAGCTAGAAGA TCCAACAGATGAAGAAAATGATATGCTTGACCTTGCATTT GGACTTACAGAAACGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGACTGGCATTACCAGCAGCTACACGAAACTTTGCGGTGGATGGCTTTGTACCAAAACCACACT AAAAGACTGATAACTGAGACTGAGAAGTGGG AACACAGGTTCTTACACAGCATCATCAATTTTGTAGCCCAACACTTGTAACTTAAACAACAGCCTTTGGTGTTATGAGGCTTTTGTGTTCCAGAGAGGATTTGTTCATTGTTGAGCTCCTCGGTTAGTTACGGAAATTATTATTTCATCAGTGCCACACTACCACCGGGTGAATAAAATGCTTCTTCTGCATGTTTATTGGCTTATAAAAAAA ]
[-] EMBL CF324024 [ GTCCATCTTAGAAGCTGCTCATGAAAATGACATCGAAATTGAAGGAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGGATGTAAATTATTATAATAAGCTAGAAGA TCCAACAGATGAAGAAAATGATATGCTTGACCTTGCATTT GGACTTACAGAAACGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGCATGCGACTGGCATTACCAGCAGCTACACGAAACTTTGCGGTGGATGGCTTTGTACCAAAACCACACT AAAAGACTGATAACTGAGACTGAGAAGTGAG AACACAGGTTTTTACACAGCATCATCAATTTTGTAGCCCAACACTTGTAACTTAAACAACAGCCTTTGGTGTTATGAGGCTTTTGTGTTCCAGAGAGGATTTGTTCATTGTTGAGCTCCTCGGTTAGTTACGGAAATTATTATTTCATCAGTGCCACACTACCACCGGGTGAATAAAATGCTTTTTCTGCATGTTTATTGGCTTAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence
[GCCGGCCACCGGCACCGGAAGGGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCGGCGATGTTGTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTGGTACGCACCCTTTTCGTGTCTCTCTTGTTTTTTATTGGTTAATCCTCTGGAAGCAGCTGAGAAATACTTCCAAACCATGACGAATCTATACATTATCACGAATGATTAAAGAGGAGAGAGCGATCGATTTGTATGAACGATATGCATGCTTCCACTATCCATTCTATGGCCGGTTTAGGCTGAGCCACTATTGTTGAGTAAATCTTGGTGCTATACCATTGGCTTTTTAATTGTTCTCCCTCTTGTGCAGTAGGGAATTTNGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACGAGGAC]
[+] EMBL C26440 [GCCGGCCACCGGCACCGGAAGGGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCGGCGATGTTGTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTGGTACGCACCCTTTTCGTGTCTCTCTTGTTTTTTATTGGTTAATCCTCTGGAAGCAGCTGAGAAATACTTCCAAACCATGACGAATCTATACATTATCACGAATGATTAAAGAGGAGAGAGCGATCGATTTGTATGAACGATATGCATGCTTCCACTATCCATTCTATGGCCGGTTTAGGCTGAGCCACTATTGTTGAGTAAATCTTGGTGCTATACCATTGGCTTTTTAATTGTTCTCCCTCTTGTGCAGTAGGGAATTTNGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTCCCAACGAGGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11943#0 CACCCGACTTCTCCTTCTCCTCTTCCCCCGCCGTCGTGGAAGGGAGGAGAGCGGCGGCGC 60
consensus_11943#1 ----------------------------------------------------------GC 2
**
consensus_11943#0 CGGCCACCGGCCACCGGAAGGGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCG 120
consensus_11943#1 CGGCCACCGGC-ACCGGAAGGGTTCGGGAGTGGTGGTGTTGGGTAGTGAAGTCGGCTGCG 61
*********** ************************************************
consensus_11943#0 GCGATGTTGTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTGTA 180
consensus_11943#1 GCGATGTTGTCCAGGATCTCGCAGCTCGGGGCGCGGCTTCTGCGCGAGAACAGAGCTGGT 121
**********************************************************
consensus_11943#0 GGGAATTTGGCAAGCAGTACAACCAGCTATTATCGAGGTCAACTCAGCCGACGTTTTGTC 240
consensus_11943#1 ACGCACCCTTTTCGTGTCTCTCTTGTTTTTTATT--GGTTAATCCTCTGGAAG------- 172
* * * * * **** *** ** * ** *
consensus_11943#0 CCAACGAAGAACATCTTATTCTCCACAGCAACAACTAGTAGTGATCGTGACGATGGCAGT 300
consensus_11943#1 -CAGCTGAGAAATACTTCCAAACCATGACGA-ATCTATACATTATCACGA-----ATGAT 225
** * **** *** *** * * * *** * *** ** *
consensus_11943#0 CAGAGCAAGGAGAAGATCTCTGTAACATTTGTGAACAAGGATGGCACAGAGCAGACAATC 360
consensus_11943#1 TAAAG--AGGAGAGAGCGATCG----ATTTGT----ATGAACGATAT---GCATGCTTCC 272
* ** ****** * ****** * * * * * *** * *
consensus_11943#0 AGTGTCCCTGTTGGAATGTCCATCTTAGAAGCTGCTCATGAAAATGACATCGAACTTGAA 420
consensus_11943#1 ACTATCCATTCT---ATGGCCGGTTTAGGCTGAGC-CACTATTGTTGAGTAAATCTTGGT 328
* * *** * * *** ** **** ** ** * * * * ****
consensus_11943#0 GGAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGGATGTAAAT 480
consensus_11943#1 G--CTATACCATTGGCTTTTTAATTGTTCTCCCTCTTGTGCAGTAGGGAATTTNGCAAGC 386
* ** * * ** ***** *** * ** *** * * **
consensus_11943#0 TATTATAATAAGCTAGAAGATCCAACAGATGAAGAAAATGATATGCTTGACCTTGCATTT 540
consensus_11943#1 -AGTACAACCAGCTATTAT-CGAGGTCAACTCAGCCGACGTTTTGTCCCAACGAGGAC-- 442
* ** ** ***** * * ** * * * ** * * * *
consensus_11943#0 GGACTTACAGAAACGTCTCGTCTTGGCTGTCAAGTGATAGCAAAGCCAGAACTTGATGGC 600
consensus_11943#1 ------------------------------------------------------------
consensus_11943#0 ATGCGACTGGCATTACCAGCAGCTACACGAAACTTTGCGGTGGATGGCTTTGTACCAAAA 660
consensus_11943#1 ------------------------------------------------------------
consensus_11943#0 CCACACTAAAAGACTGATAACTGAGACTGAGAAGTGAGAACACAGGTTCTTACACAGCAT 720
consensus_11943#1 ------------------------------------------------------------
consensus_11943#0 CATCAATTTTGTAGCCCAACACTTGTAACTTAAACAACAGCCTTTGGTGTTATGAGGCTT 780
consensus_11943#1 ------------------------------------------------------------
consensus_11943#0 TTGTGTTCCAGAGAGGATTTGTTCATTGTTGAGCTCCTCGGTTAGTTACGGAAATTATTA 840
consensus_11943#1 ------------------------------------------------------------
consensus_11943#0 TTTCATCAGTGCCACACTACCACCGGGTGAATAAAATGCTTCTTCTGCATGTTTATTGGC 900
consensus_11943#1 ------------------------------------------------------------
consensus_11943#0 TTATAAAAAAAAAAAAAAAAAAAAA 925
consensus_11943#1 -------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||