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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 686 fasta sequence
[TCGCTTTCACTTCTCACATCTCTCCTCTCCTCTTCTCCACACGAAGAGATAGAGTGAAATACCAAGAGAGAAAAAAAAGAGAGAATAATTTCCCCCTTTTCTCTCTTCCGTGCCGGAGAATCGATGGAGATTAGGGCGCCGCCGACGAGCCTGAGGCTCGC-GCCGCCGCCGCCGGCCTCCGCCAGCTTCCGCCGGACCGCGCTCAGGACCTCCTTCCTCAACGGCAGCGTTTCACTTAGACTTATTCAAGTGCGCCAATCAAATGTCAACAGGTTTAAGTGCAATGGCATAAGAAGTAACCTCCTTGATAGATTTTCTAGGGTTGTAAAGTCCTATGCAAATGCAGTCTTAAGTTCA-TTTGAA-GACCCTGAAAAGATCCTA-GACCAGGCTGTTTT-GGAAAT-GAAT-GACGATTTGACAAAGATGCGGCAAGCCAC-TGCACA-GGTCTTGGCTTCTCAAAAG-CGGCTTGAGAACAAATACAAAGCCGCT-GAACAAGCTTCT-GATGATTGGTATC-GGAGGGCTCAACTT-GCTCTTCAGAAGGGTGATGAGGATCTTGCTCGTGAAGCCCTTAAGCGGCGTAAATCATATGCTGACAAT-GCAAGCTCCTTAAAGGCCCAGCTTGATCAGCAAAAGGGCGGTGGTTAARAACCTGGTATCAAATACGSGGGGTKCTTGAAAGCAAGATAGCA]
[+] EMBL AK058611 [TCGCTTTCACTTCTCACATCTCTCCTCTCCTCTTCTCCACACGAAGAGATAGAGTGAAATACCAAGAGAGAAAAAAAAGAGAGAATAATTTCCCCCTTTTCTCTCTTCCGTGCCGGAGAATCGATGGAGATTAGGGCGCCGCCGACGAGCCTGAGGCTCGC GCCGCCGCCGCCGGCCTCCGCCAGCTTCCGCCGGACCGCGCTCAGGACCTCCTTCCTCAACGGCAGCGTTTCACTTAGACTTATTCAAGTGCGCCAATCAAATGTCAACAGGTTTAAGTGCAATGGCATAAGAAGTAACCTCCTTGATAGATTTTCTAGGGTTGTAAAGTCCTATGCAAATGCAGTCTTAAGTTCA TTTGAA GACCCTGAAAAGATCCTA GACCAGGCTGTTTT GGAAAT GAAT GACGATTTGACAAAGATGCGGCAAGCCAC TGCACA GGTCTTGGCTTCTCAAAAG CGGCTTGAGAACAAATACAAAGCCGCT GAACAAGCTTCT GATGATTGGTATC GGAGGGCTCAACTT GCTCTTCAGAAGGGTGATGAGGATCTTGCTCGTGAAGCCCTTAAGCGGCGTAAATCATATGCTGACAAT GCAAGCTCCTTAAAGGCCCAGCTTGATCAGCAAAAGGGC ]
[+] EMBL AU165598 [ CAAGAGAGAAAAAAAAGAGAGAATAATTTCCCCCTTTTCTCTCTTCCGTNCCGGAGAATCGATNGAGATTAGGGCGCCGCCGACNAGCCTGAGGCTCGC GCCGCCGCCGCCGGCCTCCGCCAGCTTCCGCCGGACCGCGCTCAGGACCNCCTTCCTCAACGGCAGCGTTTCACTTAGACTTATTCAAGTGCGCCAATCAAATGTCAACAGGTTTAAGTGCAATGGCATAAGAAGTAACCTCCTTGATAGATTTTCTAGGGTTGTAAAGTCCTATGCAAATGCAGTCTTAAGTTCA TTTGAA GACCCTGAAAAGATCCTA GACCAGGCTGTTTT GGAAATGGAATGGACGATTTGACAAAGATGCGGCAAGCCAC TGCACA GGTCTTGGCTTCTCAAAAG CGGCTTGAGAACAAATACAAAGCCGCTGGAACAAGCTTCT GATGAT ]
[+] EMBL AK067698 [ AGAAAAAAAAGAGAGAATAATTTCCCCCTTTTCTCTCTTCCGTGCCGGAGAATCGATGGAGATTAGGGCGCCGCCGACGAGCCTGAGGCTCGC GCCGCCGCCGCCGGCCTCCGCCAGCTTCCGCCGGACCGCGCTCAGGACCTCCTTCCTCAACGGCAGCGTTTCACTTAGACTTATTCAAGTGCGCCAATCAAATGTCAACAGGTTTAAGTGCAATGGCATAAGAAGTAACCTCCTTGATAGATTTTCTAGGGTTGTAAAGTCCTATGCAAATGCAGTCTTAAGTTCA TTTGAA GACCCTGAAAAGATCCTA GACCAGGCTGTTTT GGAAAT GAAT GACGATTTGACAAAGATGCGGCAAGCCAC TGCACA GGTCTTGGCTTCTCAAAAG CGGCTTGAGAACAAATACAAAGCCGCT GAACAAGCTTCT GATGATTGGTATC GGAGGGCTCAACTT GCTCTTCAGAAGGGTGATGAGGATCTTGCTCGTGAAGCCCTTAAGCGGCGTAAATCATATGCTGACAAT GCAAGCTCCTTAAAGGCCCAGCTTGATCAGCAAAAGGGC ]
[+] EMBL AK099166 [ AAAAAAAGAGAGAATAATTTCCCCCTTTTCTCTCTTCCGTGCCGGAGAATCGATGGAGATTAGGGCGCCGCCGACGAGCCTGAGGCTCGC GCCGCCGCCGCCGGCCTCCGCCAGCTTCCGCCGGACCGCGCTCAGGACCTCCTTCCTCAACGGCAGCGTTTCACTTAGACTTATTCAAGTGCGCCAATCAAATGTCAACAGGTTTAAGTGCAATGGCATAAGAAGTAACCTCCTTGATAGATTTTCTAGGGTTGTAAAGTCCTATGCAAATGCAGTCTTAAGTTCA TTTGAA GACCCTGAAAAGATCCTA GACCAGGCTGTTTT GGAAAT GAAT GACGATTTGACAAAGATGCGGCAAGCCAC TGCACA GGTCTTGGCTTCTCAAAAG CGGCTTGAGAACAAATACAAAGCCGCT GAACAAGCTTCT GATGATTGGTATC GGAGGGCTCAACTT GCTCTTCAGAAGGGTGATGAGGATCTTGCTCGTGAAGCCCTTAAGCGGCGTAAATCATATGCTGACAAT GCAAGCTCCTTAAAGGCCCAGCTTGATCAGCAAAAGGGC ]
[+] EMBL AU069534 [ AGAGAATAATTTCCCCCTTTTCTCTCTTCCGTGCCGGAGAATCGATGGAGATTAGGGNGCCGCCGACGAGCCTGAGGCT GC GCCGCCGCCGCCGGCCTCCGCCAGCTTCCGCCGGACCGCGCTCAGGACCTCCTTCCTCAACGGCAGCGTTTCACTTAGACTTATTCAAGTGCGCCAATCAAATGTCAACAGGTTTAAGTGCAATGGCATAAGAAGTAACCTCCTTGATAGATTTTCTAGGGTTGTAAAGTCCTATGCAAATGCAGTCTTAAGTTCATTTTNAAGGACCCTGAAAAGATCCTAGGACCAGGGTGTTTTGGGAAAT GAAT TACGATTTTACAAAGATGCGGCAAGCCA ]
[+] EMBL CB658777 [ TTTTCTCTCTTCCGTGCCGGAGAATCGATGGAGATTAGGGCGCCGCCGACGAGCCTGAGGCTCGC GCCGCCGCCGCCGGCCTCCGCCAGCTTCCGCCGGACCGCGCTCAGGACCTCCTTCCTCAACGGCAGCGTTTCACTTAGACTTATTCAAGTGCGCCAATCAAATGTCAACAGGTTTAAGTGCAATGGCATAAGAAGTAACCTCCTTGATAGATTTTCTAGGGTTGTAAAGTCCTATGCAAATGCAGTCTTAAGTTCA TTTGAA GACCCTGAAAAGATCCTA GACCAGGCTGTTTT GGAAAT GAAT GACGATTTGACAAAGATGCGGCAAGCCAC TGCACA GGTCTTGGCTTCTCAAAAG CGGCTTGAGAACAAATACAAAGCCGCT GAACAAGCTTCT GATGATTGGTATC GGAGGGCTCAACTT GCTCTTCAGAAGGGTGATGAGGATCTTGCTCGTGAAGCCCTTAAGCGGCGTAAATCATATGCTGACAAT GCAAGCTCCTTAAAGGCCCAGCTTGATCAGCAAAAGGGC ]
[+] EMBL AU197709 [ TTCTCTCTTCCGTGCCGGAGAATCGATGGAGATTAGGGCGCCGCCGACGAGCCTGAGGCTCGC GCCGCCGCCGCCGGCCTCCGCCAGCTTCCGCCGGACCGCGCTCAGGACCTCCTTCCTCAACGGCAGCGTTTCACTTAGACTTATTCAAGTGCGCCAATCAAATGTCAACAGGTTTAAGTGCAATGGCATAAGAAGTAACCTCCTTGATAGATTTTCTAGGGTTGTAAAGTCCTATGCAAATGCAGTCTTAAGTTCA TTTGAA GACCCTGAAAAGATCCTA GACCAGGCTGTTTT GGAAAT GAAT GACGATTTGACAAAGATGCGGCAAGCCAC TGCACA GGTCTTGGCTTCTCAAAAG CGGCTTGAGAACAAATACAAAGCCGCT GAACAAGCTTCT GATGATTGGTATC GGAGGGCTCAACTT GCTC ]
[+] EMBL AU056345 [ ATCGATGGAGATTAGGGCGCCGCCGACNAGCCTGAGGCTCGCNNCCGCCGCCNCCNGCCNCCNCCANCNTCCNCCGGACCNCGCTCAGGACCNCCTTCCTCAACNGCAGCGTTTCACTTAGACTTATTCAAGTGCGCCAATCAAATGTCAACAGGTTTAAGTGCAATGGCATAAGAAGTAACCTCCTTGATAGATTTTCTAGGGTTGTAAAGTCCTATGCAAATGCAGTCTTAAGTTCA TTTGAA GACCCTGAAAAGATCCTA GACCAGGCTGTTTT GGAAAT GAAT GACGATTTGACAAAGATGCGGCAAGCCAC TGCACA GGTCTTGGCTTCTCAAAAG CGGCTTGAGAACAAATACAAAGCCGCT GAACAAGCTTCTGGATGATTGGTATCGGGAGGGCTCAACTTGGCTCTTCAGAAGGGTGATGAGGATCTTGCTCGTGAAGCCCTTAAGCGGCGTAAATCATATGCTGACAATGGCAAGCTCCTTAAAGGCCCAGCTTGATCAGCAAAAGGGC ]
[+] EMBL AA752526 [ GCAAATGCAGTCTTAAGTTCA TTTGAA GACCCTGAAAAGATCCTA GACCAGGCTGTTTT GGAAAT GAAT GACGATTTGACAAAGATGCGGCAAGCCACSTGCACAGGGTCTTGGCTTCTCAAAAGSGGGCTTGAGAACAAATACARAGSCGST GAACAAGCTTCT GATGATKGGTATC GGRGGGCTCAACTT GCTCTTCAGAAGGGTGATGAGGATCTTKCTCGTGAAGCCCTTAAGCGGCGTAAATCAKATGCTGACAAT KSAAGCTCCTTRRAGGSSCAGCTTGATCAGCARRRGGGGGGTGGTTAARAACCTGGTATCAAATACGSGGGGTKCTTGAAAGCAAGATAGCA]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||