These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11955#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 237 fasta sequence [GCTCGACGGCTGGGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTG-AGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGCCGGTGCGTGACCGGCCTCGCATCGAAGGACGCGCTGGG] [+] EMBL CF338671 [GCTCGACGGCTGTGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTG TGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGCCGGTGCGTGACCGGCCTCGCATCGAAGGACGCGCTGGG] [+] EMBL CF339601 [GCTCGACGGCTGGGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTG AGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGCCGG ] [+] EMBL CF339840 [ CTCGACGGCTGGGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTG AGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGCCGGTGCGTGACCGGCCTCGCATCGAAGGACGCGCTGGG] [+] EMBL CF340071 [ TCGACGGCTGGGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTG AGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGCCGGTGCGTGACCGGCCTCGCATCGAAGGACGCGCTGGG] [+] EMBL CF340011 [ CGACGGCTGGGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTG AGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGCCGGTGCGTGACCGGCCTCGCATCGAAGGACGCGCTGGG] [+] EMBL CF339146 [ GACGGCTGTGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTG AGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACG ] [+] EMBL CF340101 [ CGGCTGGGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTG AGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGCCGGTGCGTGACCGGCCTCGCATCGAAGGACGCGCTGGG] [+] EMBL CF339126 [ TCGTCGGGCTGATCCGCTGCGCATCCGACCTGTAGCCGCTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGTCGGTGATTAACTGATCTTTTATCCAATGA ] consensusID : consensus_11955#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 159 fasta sequence [CTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGACGGCGCTTTACCGGCCTAAAATACAAG] [+] EMBL CF338964 [CTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCTCGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGAAGACGCGGTCGTGCTCGGACGGCGCTTTACCGGCCTAAAATACAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11955#0 GCTCGACGGCTGGGACCCGCGCCTCGTCGGGCTGATCCGCTGCGCATCCGACCTGAGCCG 60 consensus_11955#1 ------------------------------------------------------------ consensus_11955#0 CTGGTCGCTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCT 120 consensus_11955#1 -------CTGCACGACCGCCAGCCGCTCGCGCGCTGGGTGTGGGACAGCGTATGCCTGCT 53 ***************************************************** consensus_11955#0 CGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGA 180 consensus_11955#1 CGGCGACGCGTGTCATCCGATGCTGCCGTACCAGTCGCAGGGCGCCGCGCAGGCGCTGGA 113 ************************************************************ consensus_11955#0 AGACGCGGTCGTGCTCGGCCGGTGCGTGACCGGCCTCGCATCGAAGGACGCGCTGGG 237 consensus_11955#1 AGACGCGGTCGTGCTCGGACGGCGCTTTACCGGCCTAAAATACAAG----------- 159 ****************** *** ** * ******** ** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||