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Oryza sativa
cluster # 11964 cluster # 11964       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11964#0 length = 2174 sequences # 6  
consensus_11964#1 length = 691 sequences # 1  
consensus_11964#2 length = 522 sequences # 1  
consensus_11964#3 length = 178 sequences # 1  

consensusID : consensus_11964#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2174
fasta sequence
                              [TTCCTGGAGCCTGGTTCGCTGTTTTCCTGATAAACTAGCTGCACCTCCCAAAGGGAAAGCTCATTTGATACATTGCAATTCCAAGACAGCTGTTGCTTTCTCAGTTATGGATGAGTGCTTTCTGCCACGTATTGATGAGAGAAGTGGGATTAATATAATCCACAATGTCATATATAACTGTGGGTCAGATTTCAATCGTTTAAATTTTAGTAAGTTCTATACATTTATTCTGGAGCGGGGTGATGAAGTTATATCTGCAGCAGCTGTCAGGATTCATGGAACTGACTTAGCAGAAATGCCATTCATAGGAACAAGGGGCATATATAGGCGCCAAGGGATGTGCCATCGGCTACTCAATGCAATTGAATCGGCCCTTTCCTCCCTGAATGTTCG-AGGCTAGTAATACCTGCCATACCTGAATTGC-AAATACCTGGNCTACTGTTTTTGGTTTTAAACCTGTTGAACCTTCCAAGAGACAAAAAATCAAGTCTCTGAATATCTTGATTATCCATGGCACTGGTCTTCTAGAGAAGCGGTTGCTTGCAACAGGCACTATTAACCAAGAGAACACTACTGTTAATGATATGATGGATGCTCAAACACATGTTGAAGCAACCGGATCCCGGACACCTGTTCATTTTTCCTGTGAATTACCAGTGGGTGGTGATCCTGATATTAAGCATCATGATGACTCTCATCCTTTAGTTGGGAACTCCAAAGGCTTGACACTTAATCTGCCTTGTGTTCCTGAAGAAAAAACTGCAGAATTGACATCTCCAGTATTAGATGTTGTTCAGTGCATGCCTGAATCTGAAAATACTCAAGAAATGAAAAATGGAGAAACAGATGCGACACTGACTTCTGAGGACATAATTGCAGAACAGAAGTATGAAGATAAATCTAATTCCAGTCTTACAGATTCATCTGCTATTCCCATGACAGTGGATCCAGGCTCATGTTCATCCAATGAGACTGTGAAAGGAGAACATCACACATCTAGTGAACCTTCTGTTGAAGCTATTCTAGTAAGAGACAAACCTGAACCTTCCATCTCTTGCAACGTTACCAACCAAGAAGACAAAAACTCTTCCATGGTTCCTGTTGATACGACAGTTCATTTAGCCACTATAGTTGGGAATCATGATATTCAGAATTCAGTGGAAGTCAAAGGTATGGAACATAATACAGCTAAGGATCAAACTTTTGTTAGTGCTGTAGCTAATAATGTTGCTACTACTGAAGATCCCAGTGATTCTGTAGCTGACTGTGAAGTGCCAATAGTGAGGTCTATTCAGCAGAAGGATGAGGTTATCGCAGACAAAAATGCTTGCGCAACTATAGATCAAACTGCTGTTGACGATGTAGCTAATAATTTTGTTGCTACCACTGAAAATGACACTGATTCTACAGCTGAACTTGGAGTGTCAATGGAGAGATGTATCCAGCAAAAGGTTGAGGTTATCAAAGACAAAAGTGATTCACCATTGAGAACTTCTATAAGCAAAGTTATGTTGGAGAAATCGGATCAAATGAAGTCTACTGAAAGTGATAGTGTTAAAATGAAGGACATGGCGATTGAGGTGAAAGTCACAGTTGAGAACTTCAGTGAAGCAGGTAAACCAGCTTCAGCGCTTGTCATGTCAAATGACATTAATGGTGAAGTTATGGCTAAGCCTAATCTAACTTGTGGGGATGATCAACTTCATGGAGGGGATGGGACATACAAAAATAG-CATGGAAGATGACCTAGCTTCCAGAGAACCTGTTAATGCATGACTTTGCATTT-CCTGCTACAAAATGTTTAAGTGAGCAGAG-CAATGGGAGGGACGATCTAGTTTTCTGCAAGTAGCTGCCT-CAGCTCGTTCTCCATGGCTACAACGAAGTGTTTAGAGTTGCATTTTGCAGCAATGAAATGCTGATGTTTCAGAATTTTGGTAGTCTGTCGATCATGGGGGCTTTTTGTTGGTTTAGTAGGCATAAGTAGTTCACACCGTAGGACCTCTTATACAAACCCCAAAAAGTGGGCCAAATTTTTGGTGTAAATACATGTGGGAAATTGCTGTTGGCATTTTGGTGCACCTGAAATGTTGTCTGAAGATTGTCGATGAAAACAGACTTGCAGGTAGTGCCTGTACAGATATAAAAATCCATCCTCAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF304856             [TTCCTGGAGCCTGGTTCGCTGTTTTCCTGATAAACTAGCTGCACCTCCCAAAGGGAAAGCTCATTTGATACATTGCAATTCCAAGACAGCTGTTGCTTTCTCAGTTATGGATGAGTGCTTTCTGCCACGTATTGATGAGAGAAGTGGGATTAATATAATCCACAATGTCATATATAACTGTGGGTCAGATTTCAATCGTTTAAATTTTAGTAAGTTCTATACATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL C27324               [    TGGAGCCTGGTTCGCTGTTTTCCTGATAAACTAGCTGCACCTCCCAAAGGGAAAGCTCATTTGATACATTGCAATTCCAAGACAGCTGTTGCTTTCTCAGTTATGGATGAGTGCTTTCTGCCACGTATTGATGAGAGAAGTGGGATTAATATAATCCACAATGTCATATATAACTGTGGGTCAGATTTCAATCGTTTAAATTTTAGTAAGTTCTATACATTTATTCTGGAGCGGGGTGATGAAGTTATATCTGCAGCAGCTGTCAGGATTCATGGAACTGACTTAGCAGAAATGCCATTCATAGGAACAAGGGGCATATATAGGCGCCAAGGGATGTGCCATCGGCTACTCAATGCAATTGAATCGGCCCTTTCCTCCCTGAATGTTCG AGGCTAGTAATACCTGCCATACCTGAATTGC AAATACCTGGNCTACTGTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK107434             [                                                                                                                                                                                                                                                                GCAGCAGCTGTCAGGATTCATGGAACTGACTTAGCAGAAATGCCATTCATAGGAACAAGGGGCATATATAGGCGCCAAGGGATGTGCCATCGGCTACTCAATGCAATTGAATCGGCCCTTTCCTCCCTGAATGTTCGAAGACTAGTAATACCTGCCATACCTGAATTGCAAAATACCTGGACTACTGTTTTTGGTTTTAAACCTGTTGAACCTTCCAAGAGACAAAAAATCAAGTCTCTGAATATCTTGATTATCCATGGCACTGGTCTTCTAGAGAAGCGGTTGCTTGCAACAGGCACTATTAACCAAGAGAACACTACTGTTAATGATATGATGGATGCTCAAACACATGTTGAAGCAACCGGATCCCGGACACCTGTTCATTTTTCCTGTGAATTACCAGTGGGTGGTGATCCTGATATTAAGCATCATGATGACTCTCATCCTTTAGTTGGGAACTCCAAAGGCTTGACACTTAATCTGCCTTGTGTTCCTGAAGAAAAAACTGCAGAATTGACATCTCCAGTATTAGATGTTGTTCAGTGCATGCCTGAATCTGAAAATACTCAAGAAATGAAAAATGGAGAAACAGATGCGACACTGACTTCTGAGGACATAATTGCAGAACAGAAGTATGAAGATAAATCTAATTCCAGTCTTACAGATTCATCTGCTATTCCCATGACAGTGGATCCAGGCTCATGTTCATCCAATGAGACTGTGAAAGGAGAACATCACACATCTAGTGAACCTTCTGTTGAAGCTATTCTAGTAAGAGACAAACCTGAACCTTCCATCTCTTGCAACGTTACCAACCAAGAAGACAAAAACTCTTCCATGGTTCCTGTTGATACGACAGTTCATTTAGCCACTATAGTTGGGAATCATGATATTCAGAATTCAGTGGAAGTCAAAGGTATGGAACATAATACAGCTAAGGATCAAACTTTTGTTAGTGCTGTAGCTAATAATGTTGCTACTACTGAAGATCCCAGTGATTCTGTAGCTGACTGTGAAGTGCCAATAGTGAGGTCTATTCAGCAGAAGGATGAGGTTATCGCAGACAAAAATGCTTGCGCAACTATAGATCAAACTGCTGTTGACGATGTAGCTAATAATTTTGTTGCTACCACTGAAAATGACACTGATTCTACAGCTGAACTTGGAGTGTCAATGGAGAGATGTATCCAGCAAAAGGTTGAGGTTATCAAAGACAAAAGTGATTCACCATTGAGAACTTCTATAAGCAAAGTTATGTTGGAGAAATCGGATCAAATGAAGTCTACTGAAAGTGATAGTGTTAAAATGAAGGACATGGCGATTGAGGTGAAAGTCACAGTTGAGAACTTCAGTGAAGCAGGTAAACCAGCTTCAGCGCTTGTCATGTCAAATGACATTAATGGTGAAGTTATGGCTAAGCCTAATCTAACTTGTGGGGATGATCAACTTCATGGAGGGGATGGGACATACAAAAATAG CATGGAAGATGACCTAGCTTCCAGAGAACCTGTTAATGCATGACTTTGCATTT CCTGCTACAAAATGTTTAAGTGAGCAGAG CAATGGGAGGGACGATCTAGTTTTCTGCAAGTAGCTGCCT CAGCTCGTTCTCCATGGCTACAACGAAGTGTTTAGAGTTGCATTTTGCAGCAATGAAATGCTGATGTTTCAGAATTTTGGTAGTCTGTCGATCATGGGGGCTTTTTGTTGGTTTAGTAGGCATAAGTAGTTCACACCGTAGGACCTCTTATACAAACCCCAAAAAGTGGGCCAAATTTTTGGTGTAAATACATGTGGGAAATTGCTGTTGGCATTTTGGTGCACCTGAAATGTTGTCTGAAGATTGTCGATGAAAACAGACTTGCAGGTAGTGCCTGTACAGATATAAAAATC                           ]
[+] EMBL CF327381             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCATGTTCATCCAATGAGACTGTGAAAGGAGAACATCACACATCTAGTGAACCTTCTGTTGAAGCTATTCTAGTAAGAGACAAACCTGAACCTTCCATCTCTTGCAACGTTACCAACCAAGAAGACAAAAACTCTTCCATGGTTCCTGTTGATACGACAGTTCATTTAGCCACTATAGTTGGGAATCATGATATTCAGAATTCAGTGGAAGTCAAAGGTATGGAACATAATACAGCTAAGGATCAAACTTTTGTTAGTGCTGTAGCTAATAATGTTGCTACTACTGAAGATCCCAGTGATTCTGTAGCTGACTGTGAAGTGCCAATAGTGAGGTCTATTCAGCAGAAGGATGAGGTTATCGCAGACAAAAATGCTTGCGCAACTATAGATCAAACTGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSC429               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCAACCAAGAAGNCAAAAACTCTTCCATGGTTCCTGTTGATACGACAGTTCATTTAGCCANTATAGTTGGGAATCATGATATTCAGAATTCAGTGGAAGTCAAAGGTATGGAACATAATACAGCTAAGGATCAAACTTTTGTTAGTGCTGTAGCTAATAATGTTGCNACTACTGAAGATCCCAGTGATTNTGTAGNTGACTGTAAAGTGCCAATAGTGAGGTCTATTCAGCAGAAGAATGAGGTTATCGCAGACAAAAATACTTGCGCAACTATAGATCAAACTTCTGTTGACGATGNAGCTAATAATTTTGNTGCTACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL C99195               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCGCTTGTCATGTCAAATGACATTAATGGTGAAGTTATGGCTAANCCTAATCTAACTTGTGGGGATGATCAACTTCATGGAGGGGATGGGACATACAAAAATAGCCATGGAAGATGACCTAGCTTCCAGAGANCCTGTTAATGCATGACTTTGCATTTCCCTGCTACAAAATGTTTAAGTGAGCAGAGCCAATGGGAGGGACGATCTAGTTTTCTGCAAGTAGCTGCCTACAGCTCGTTCTCC TGGCTACAACGAAGTGTTTAGAGTTGCATTTTGCAGCAATGAAATGCTGATGTTTCAGAATTTTGGTAGTCTGTCGATCATGGGGGCTTTTTGTTGGTTTAGTAGGCATAAGTAGTTCACACCGTAGGACCTCTTATACAAACCCCAAAAAGTGGGCCAAATTTTTGGTGTAAATACATGTGGGAAATTGCTGTTGGCATTTTGGTGCACCTGAAATGTTGTCTGAAGATTGTCGATGAAAACAGACTTGCAGGTAGTGCCTGTACAGATATAAAAATCCATCCTCAAAAAAAAAAAAAAAAAAAA]


>consensus_11964#0 TTCCTGGAGCCTGGTTCGCTGTTTTCCTGATAAACTAGCTGCACCTCCCAAAGGGAAAGC TCATTTGATACATTGCAATTCCAAGACAGCTGTTGCTTTCTCAGTTATGGATGAGTGCTT TCTGCCACGTATTGATGAGAGAAGTGGGATTAATATAATCCACAATGTCATATATAACTG TGGGTCAGATTTCAATCGTTTAAATTTTAGTAAGTTCTATACATTTATTCTGGAGCGGGG TGATGAAGTTATATCTGCAGCAGCTGTCAGGATTCATGGAACTGACTTAGCAGAAATGCC ATTCATAGGAACAAGGGGCATATATAGGCGCCAAGGGATGTGCCATCGGCTACTCAATGC AATTGAATCGGCCCTTTCCTCCCTGAATGTTCGAGGCTAGTAATACCTGCCATACCTGAA TTGCAAATACCTGGNCTACTGTTTTTGGTTTTAAACCTGTTGAACCTTCCAAGAGACAAA AAATCAAGTCTCTGAATATCTTGATTATCCATGGCACTGGTCTTCTAGAGAAGCGGTTGC TTGCAACAGGCACTATTAACCAAGAGAACACTACTGTTAATGATATGATGGATGCTCAAA CACATGTTGAAGCAACCGGATCCCGGACACCTGTTCATTTTTCCTGTGAATTACCAGTGG GTGGTGATCCTGATATTAAGCATCATGATGACTCTCATCCTTTAGTTGGGAACTCCAAAG GCTTGACACTTAATCTGCCTTGTGTTCCTGAAGAAAAAACTGCAGAATTGACATCTCCAG TATTAGATGTTGTTCAGTGCATGCCTGAATCTGAAAATACTCAAGAAATGAAAAATGGAG AAACAGATGCGACACTGACTTCTGAGGACATAATTGCAGAACAGAAGTATGAAGATAAAT CTAATTCCAGTCTTACAGATTCATCTGCTATTCCCATGACAGTGGATCCAGGCTCATGTT CATCCAATGAGACTGTGAAAGGAGAACATCACACATCTAGTGAACCTTCTGTTGAAGCTA TTCTAGTAAGAGACAAACCTGAACCTTCCATCTCTTGCAACGTTACCAACCAAGAAGACA AAAACTCTTCCATGGTTCCTGTTGATACGACAGTTCATTTAGCCACTATAGTTGGGAATC ATGATATTCAGAATTCAGTGGAAGTCAAAGGTATGGAACATAATACAGCTAAGGATCAAA CTTTTGTTAGTGCTGTAGCTAATAATGTTGCTACTACTGAAGATCCCAGTGATTCTGTAG CTGACTGTGAAGTGCCAATAGTGAGGTCTATTCAGCAGAAGGATGAGGTTATCGCAGACA AAAATGCTTGCGCAACTATAGATCAAACTGCTGTTGACGATGTAGCTAATAATTTTGTTG CTACCACTGAAAATGACACTGATTCTACAGCTGAACTTGGAGTGTCAATGGAGAGATGTA TCCAGCAAAAGGTTGAGGTTATCAAAGACAAAAGTGATTCACCATTGAGAACTTCTATAA GCAAAGTTATGTTGGAGAAATCGGATCAAATGAAGTCTACTGAAAGTGATAGTGTTAAAA TGAAGGACATGGCGATTGAGGTGAAAGTCACAGTTGAGAACTTCAGTGAAGCAGGTAAAC CAGCTTCAGCGCTTGTCATGTCAAATGACATTAATGGTGAAGTTATGGCTAAGCCTAATC TAACTTGTGGGGATGATCAACTTCATGGAGGGGATGGGACATACAAAAATAGCATGGAAG ATGACCTAGCTTCCAGAGAACCTGTTAATGCATGACTTTGCATTTCCTGCTACAAAATGT TTAAGTGAGCAGAGCAATGGGAGGGACGATCTAGTTTTCTGCAAGTAGCTGCCTCAGCTC GTTCTCCATGGCTACAACGAAGTGTTTAGAGTTGCATTTTGCAGCAATGAAATGCTGATG TTTCAGAATTTTGGTAGTCTGTCGATCATGGGGGCTTTTTGTTGGTTTAGTAGGCATAAG TAGTTCACACCGTAGGACCTCTTATACAAACCCCAAAAAGTGGGCCAAATTTTTGGTGTA AATACATGTGGGAAATTGCTGTTGGCATTTTGGTGCACCTGAAATGTTGTCTGAAGATTG TCGATGAAAACAGACTTGCAGGTAGTGCCTGTACAGATATAAAAATCCATCCTCAAAAAA AAAAAAAAAAAAAA



consensusID : consensus_11964#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence
                              [AAAGTGATAGTGTTACAATTAAGGCCCATGCCGATTGAGGTGAAAGTCCCAGTTGAGAACTTCAGTGAAGCAGGTAAACCAGGTTCAGCGCTTGTCATGTCAAATGCCATTAATGGTGAAGTTATGGCTAAGCCTAATCTAACTTGTGGGGATGATCAACTTCATGGAGGGGATGGGACATACAAAAATAGCATGGAAGATGACCTAGCTTCCAGAGAACCTGTTAATGCATGACTTTGCATTTCCTGCTACAAAATGTTTAAGTGAGCAGAGCAATGGGAGGGACGATCTAGTTTTCTGCAAGTAGCTGCCTCAGCTCGTTCTCCATGGCTACAACGAAGTGTTTAGAGTTGCATTTTGCAGCAATGAAATGCTGATGTTTCAGAATTTTGGTAGTCTGTCGATCATGGGGCTTTTTGTTGGTTTAGTAGGCATAAGTAGTTCACACCGTAGGACCTCTTATACAAACCCCAAAAAGTGGGCCAAATTTTTGGTGTAAATACATGTGGGAAATTGCTGTTGGCATTTTGGTGCACCTGAAATGTTGTCTGAAGATTGTCGATGAAAACAGACTTGCAGGTAGTGCCTGTACAGATATAAAAATCCATCCTCATCTGTTTGACTGTTACTCTGAATTTTCATTCGGTTTAGAGTTCTGAATTCTGGATGGGATTTCAGCAAAAAAAAAAAA]

[-] EMBL CA761539             [AAAGTGATAGTGTTACAATTAAGGCCCATGCCGATTGAGGTGAAAGTCCCAGTTGAGAACTTCAGTGAAGCAGGTAAACCAGGTTCAGCGCTTGTCATGTCAAATGCCATTAATGGTGAAGTTATGGCTAAGCCTAATCTAACTTGTGGGGATGATCAACTTCATGGAGGGGATGGGACATACAAAAATAGCATGGAAGATGACCTAGCTTCCAGAGAACCTGTTAATGCATGACTTTGCATTTCCTGCTACAAAATGTTTAAGTGAGCAGAGCAATGGGAGGGACGATCTAGTTTTCTGCAAGTAGCTGCCTCAGCTCGTTCTCCATGGCTACAACGAAGTGTTTAGAGTTGCATTTTGCAGCAATGAAATGCTGATGTTTCAGAATTTTGGTAGTCTGTCGATCATGGGGCTTTTTGTTGGTTTAGTAGGCATAAGTAGTTCACACCGTAGGACCTCTTATACAAACCCCAAAAAGTGGGCCAAATTTTTGGTGTAAATACATGTGGGAAATTGCTGTTGGCATTTTGGTGCACCTGAAATGTTGTCTGAAGATTGTCGATGAAAACAGACTTGCAGGTAGTGCCTGTACAGATATAAAAATCCATCCTCATCTGTTTGACTGTTACTCTGAATTTTCATTCGGTTTAGAGTTCTGAATTCTGGATGGGATTTCAGCAAAAAAAAAAAA]


>consensus_11964#1 AAAGTGATAGTGTTACAATTAAGGCCCATGCCGATTGAGGTGAAAGTCCCAGTTGAGAAC TTCAGTGAAGCAGGTAAACCAGGTTCAGCGCTTGTCATGTCAAATGCCATTAATGGTGAA GTTATGGCTAAGCCTAATCTAACTTGTGGGGATGATCAACTTCATGGAGGGGATGGGACA TACAAAAATAGCATGGAAGATGACCTAGCTTCCAGAGAACCTGTTAATGCATGACTTTGC ATTTCCTGCTACAAAATGTTTAAGTGAGCAGAGCAATGGGAGGGACGATCTAGTTTTCTG CAAGTAGCTGCCTCAGCTCGTTCTCCATGGCTACAACGAAGTGTTTAGAGTTGCATTTTG CAGCAATGAAATGCTGATGTTTCAGAATTTTGGTAGTCTGTCGATCATGGGGCTTTTTGT TGGTTTAGTAGGCATAAGTAGTTCACACCGTAGGACCTCTTATACAAACCCCAAAAAGTG GGCCAAATTTTTGGTGTAAATACATGTGGGAAATTGCTGTTGGCATTTTGGTGCACCTGA AATGTTGTCTGAAGATTGTCGATGAAAACAGACTTGCAGGTAGTGCCTGTACAGATATAA AAATCCATCCTCATCTGTTTGACTGTTACTCTGAATTTTCATTCGGTTTAGAGTTCTGAA TTCTGGATGGGATTTCAGCAAAAAAAAAAAA



consensusID : consensus_11964#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence
                              [GGCATACAAAAATAGCATGGAAGATGCCCTAGTTTCCAAAGAACCTGTTAAAGCAAGACTTTGCATTTCCTGGTACAAAATGTTTAAGTGGGCAGAGCAATGGGAGGGGGGATTTAGTTTTTTGCAAGTAGATGCCTCAGGTTGTTTTCCATGGGTACAAAGAAGTGTTTAAAGTTGCATTTTGCAGCAATGAAAAGGTGATGTTTCAAAATTTTGGTAGTTTGTGGATCAAGGGGGGTTTTTGTTGGTTTAGTAGGCATAAGTAGTTCCCCCCGTAGGGCCTTTTATACAAACCCCAAAAAGTGGGCCAAATTTTTGGGGTAAAAACATGTGGGAAATTGCTGTTGGCATTTTGGGGCCCCTGAAATGTTGTTTGAAAATTGTCGATGAAAACAAACTTGCAGGTAGGGCCTGTCCAAATATAAAAATCCCTCCTCATTTGTTTGGCGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATTGCCGT]

[-] EMBL CF327380             [GGCATACAAAAATAGCATGGAAGATGCCCTAGTTTCCAAAGAACCTGTTAAAGCAAGACTTTGCATTTCCTGGTACAAAATGTTTAAGTGGGCAGAGCAATGGGAGGGGGGATTTAGTTTTTTGCAAGTAGATGCCTCAGGTTGTTTTCCATGGGTACAAAGAAGTGTTTAAAGTTGCATTTTGCAGCAATGAAAAGGTGATGTTTCAAAATTTTGGTAGTTTGTGGATCAAGGGGGGTTTTTGTTGGTTTAGTAGGCATAAGTAGTTCCCCCCGTAGGGCCTTTTATACAAACCCCAAAAAGTGGGCCAAATTTTTGGGGTAAAAACATGTGGGAAATTGCTGTTGGCATTTTGGGGCCCCTGAAATGTTGTTTGAAAATTGTCGATGAAAACAAACTTGCAGGTAGGGCCTGTCCAAATATAAAAATCCCTCCTCATTTGTTTGGCGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATTGCCGT]


>consensus_11964#2 GGCATACAAAAATAGCATGGAAGATGCCCTAGTTTCCAAAGAACCTGTTAAAGCAAGACT TTGCATTTCCTGGTACAAAATGTTTAAGTGGGCAGAGCAATGGGAGGGGGGATTTAGTTT TTTGCAAGTAGATGCCTCAGGTTGTTTTCCATGGGTACAAAGAAGTGTTTAAAGTTGCAT TTTGCAGCAATGAAAAGGTGATGTTTCAAAATTTTGGTAGTTTGTGGATCAAGGGGGGTT TTTGTTGGTTTAGTAGGCATAAGTAGTTCCCCCCGTAGGGCCTTTTATACAAACCCCAAA AAGTGGGCCAAATTTTTGGGGTAAAAACATGTGGGAAATTGCTGTTGGCATTTTGGGGCC CCTGAAATGTTGTTTGAAAATTGTCGATGAAAACAAACTTGCAGGTAGGGCCTGTCCAAA TATAAAAATCCCTCCTCATTTGTTTGGCGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATTGCCGT



consensusID : consensus_11964#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 178
fasta sequence
                              [TTAAAATGAAGGACATGGCGATTGAGGTGAAAGTCACAGTTGAGAACTTCAGTGAAGCAGTGAGCAGAGCAATGGGAGGGACGATCTAGTTTTCTGCAAGTAGCTGCCTCAGCTCGTTCTCCATGGCTACAACGAAGGTTTTAGAGTTGCATTTGCAGCAATGAATTCTGATGTTCAG]

[+] EMBL AA749827             [TTAAAATGAAGGACATGGCGATTGAGGTGAAAGTCACAGTTGAGAACTTCAGTGAAGCAGTGAGCAGAGCAATGGGAGGGACGATCTAGTTTTCTGCAAGTAGCTGCCTCAGCTCGTTCTCCATGGCTACAACGAAGGTTTTAGAGTTGCATTTGCAGCAATGAATTCTGATGTTCAG]


>consensus_11964#3 TTAAAATGAAGGACATGGCGATTGAGGTGAAAGTCACAGTTGAGAACTTCAGTGAAGCAG TGAGCAGAGCAATGGGAGGGACGATCTAGTTTTCTGCAAGTAGCTGCCTCAGCTCGTTCT CCATGGCTACAACGAAGGTTTTAGAGTTGCATTTGCAGCAATGAATTCTGATGTTCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11964#0      TTCCTGGAGCCTGGTTCGCTGTTTTCCTGATAAACTAGCTGCACCTCCCAAAGGGAAAGC 60
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      TCATTTGATACATTGCAATTCCAAGACAGCTGTTGCTTTCTCAGTTATGGATGAGTGCTT 120
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      TCTGCCACGTATTGATGAGAGAAGTGGGATTAATATAATCCACAATGTCATATATAACTG 180
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      TGGGTCAGATTTCAATCGTTTAAATTTTAGTAAGTTCTATACATTTATTCTGGAGCGGGG 240
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      TGATGAAGTTATATCTGCAGCAGCTGTCAGGATTCATGGAACTGACTTAGCAGAAATGCC 300
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      ATTCATAGGAACAAGGGGCATATATAGGCGCCAAGGGATGTGCCATCGGCTACTCAATGC 360
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      AATTGAATCGGCCCTTTCCTCCCTGAATGTTCGAGGCTAGTAATACCTGCCATACCTGAA 420
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      TTGCAAATACCTGGNCTACTGTTTTTGGTTTTAAACCTGTTGAACCTTCCAAGAGACAAA 480
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      AAATCAAGTCTCTGAATATCTTGATTATCCATGGCACTGGTCTTCTAGAGAAGCGGTTGC 540
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      TTGCAACAGGCACTATTAACCAAGAGAACACTACTGTTAATGATATGATGGATGCTCAAA 600
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      CACATGTTGAAGCAACCGGATCCCGGACACCTGTTCATTTTTCCTGTGAATTACCAGTGG 660
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      GTGGTGATCCTGATATTAAGCATCATGATGACTCTCATCCTTTAGTTGGGAACTCCAAAG 720
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      GCTTGACACTTAATCTGCCTTGTGTTCCTGAAGAAAAAACTGCAGAATTGACATCTCCAG 780
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      TATTAGATGTTGTTCAGTGCATGCCTGAATCTGAAAATACTCAAGAAATGAAAAATGGAG 840
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      AAACAGATGCGACACTGACTTCTGAGGACATAATTGCAGAACAGAAGTATGAAGATAAAT 900
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      CTAATTCCAGTCTTACAGATTCATCTGCTATTCCCATGACAGTGGATCCAGGCTCATGTT 960
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      CATCCAATGAGACTGTGAAAGGAGAACATCACACATCTAGTGAACCTTCTGTTGAAGCTA 1020
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      TTCTAGTAAGAGACAAACCTGAACCTTCCATCTCTTGCAACGTTACCAACCAAGAAGACA 1080
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      AAAACTCTTCCATGGTTCCTGTTGATACGACAGTTCATTTAGCCACTATAGTTGGGAATC 1140
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      ATGATATTCAGAATTCAGTGGAAGTCAAAGGTATGGAACATAATACAGCTAAGGATCAAA 1200
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      CTTTTGTTAGTGCTGTAGCTAATAATGTTGCTACTACTGAAGATCCCAGTGATTCTGTAG 1260
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      CTGACTGTGAAGTGCCAATAGTGAGGTCTATTCAGCAGAAGGATGAGGTTATCGCAGACA 1320
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      AAAATGCTTGCGCAACTATAGATCAAACTGCTGTTGACGATGTAGCTAATAATTTTGTTG 1380
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      CTACCACTGAAAATGACACTGATTCTACAGCTGAACTTGGAGTGTCAATGGAGAGATGTA 1440
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      TCCAGCAAAAGGTTGAGGTTATCAAAGACAAAAGTGATTCACCATTGAGAACTTCTATAA 1500
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------------------------
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      GCAAAGTTATGTTGGAGAAATCGGATCAAATGAAGTCTACTGAAAGTGATAGTGTTAAAA 1560
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      ------------------------------------------AAAGTGATAGTGTTACAA 18
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      TGAAGGAC-ATGGCGATTGAGGTGAAAGTCACAGTTGAGAACTTCAGTGAAGCAGGTAAA 1619
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      TTAAGGCCCATGCCGATTGAGGTGAAAGTCCCAGTTGAGAACTTCAGTGAAGCAGGTAAA 78
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      CCAGCTTCAGCGCTTGTCATGTCAAATGACATTAATGGTGAAGTTATGGCTAAGCCTAAT 1679
consensus_11964#2      ------------------------------------------------------------
consensus_11964#1      CCAGGTTCAGCGCTTGTCATGTCAAATGCCATTAATGGTGAAGTTATGGCTAAGCCTAAT 138
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      CTAACTTGTGGGGATGATCAACTTCATGGAGGGGATGGGACATACAAAAATAGCATGGAA 1739
consensus_11964#2      --------------------------------------GGCATACAAAAATAGCATGGAA 22
consensus_11964#1      CTAACTTGTGGGGATGATCAACTTCATGGAGGGGATGGGACATACAAAAATAGCATGGAA 198
consensus_11964#3      -------------------------------------------------TTAAAATGAAG 11
                                                                         **  *** * 

consensus_11964#0      GATGACCTAGCTTCCAGAGAACCTGTTAATGCATGACTTTGCATTTCCTGCTACAAAATG 1799
consensus_11964#2      GATGCCCTAGTTTCCAAAGAACCTGTTAAAGCAAGACTTTGCATTTCCTGGTACAAAATG 82
consensus_11964#1      GATGACCTAGCTTCCAGAGAACCTGTTAATGCATGACTTTGCATTTCCTGCTACAAAATG 258
consensus_11964#3      GACATGGCGATT----GAG-----GTGAAAGTCACAGTTGAGAACTTC--------AGTG 54
                       **         *     **     ** ** *    * **   *  * *        * **

consensus_11964#0      TTTAAGTGAGCAGAGCAATGGGAGGGACGATCTAGTTTTCTGCAAGTAGCTGCCTCAGCT 1859
consensus_11964#2      TTTAAGTGGGCAGAGCAATGGGAGGGGGGATTTAGTTTTTTGCAAGTAGATGCCTCAGGT 142
consensus_11964#1      TTTAAGTGAGCAGAGCAATGGGAGGGACGATCTAGTTTTCTGCAAGTAGCTGCCTCAGCT 318
consensus_11964#3      AAGCAGTGAGCAGAGCAATGGGAGGGACGATCTAGTTTTCTGCAAGTAGCTGCCTCAGCT 114
                           **** *****************  *** ******* ********* ******** *

consensus_11964#0      CGTTCTCCATGGCTACAACGAAGTGTTTAGAGTTGCATTTTGCAGCAATGAAATGCTGAT 1919
consensus_11964#2      TGTTTTCCATGGGTACAAAGAAGTGTTTAAAGTTGCATTTTGCAGCAATGAAAAGGTGAT 202
consensus_11964#1      CGTTCTCCATGGCTACAACGAAGTGTTTAGAGTTGCATTTTGCAGCAATGAAATGCTGAT 378
consensus_11964#3      CGTTCTCCATGGCTACAACGAAGGTTTTAGAGTTGCATTT-GCAGCAATGAATT-CTGAT 172
                        *** ******* ***** ****  **** ********** ***********    ****

consensus_11964#0      GTTTCAGAATTTTGGTAGTCTGTCGATCATGGGGGCTTTTTGTTGGTTTAGTAGGCATAA 1979
consensus_11964#2      GTTTCAAAATTTTGGTAGTTTGTGGATCAAGGGGGGTTTTTGTTGGTTTAGTAGGCATAA 262
consensus_11964#1      GTTTCAGAATTTTGGTAGTCTGTCGATCATGGGG-CTTTTTGTTGGTTTAGTAGGCATAA 437
consensus_11964#3      GTTCAG------------------------------------------------------ 178
                       ***                                                         

consensus_11964#0      GTAGTTCACACCGTAGGACCTCTTATACAAACCCCAAAAAGTGGGCCAAATTTTTGGTGT 2039
consensus_11964#2      GTAGTTCCCCCCGTAGGGCCTTTTATACAAACCCCAAAAAGTGGGCCAAATTTTTGGGGT 322
consensus_11964#1      GTAGTTCACACCGTAGGACCTCTTATACAAACCCCAAAAAGTGGGCCAAATTTTTGGTGT 497
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      AAATACATGTGGGAAATTGCTGTTGGCATTTTGGTGCACCTGAAATGTTGTCTGAAGATT 2099
consensus_11964#2      AAAAACATGTGGGAAATTGCTGTTGGCATTTTGGGGCCCCTGAAATGTTGTTTGAAAATT 382
consensus_11964#1      AAATACATGTGGGAAATTGCTGTTGGCATTTTGGTGCACCTGAAATGTTGTCTGAAGATT 557
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      GTCGATGAAAACAGACTTGCAGGTAGTGCCTGTACAGATATAAAAATCCATCCTCA---- 2155
consensus_11964#2      GTCGATGAAAACAAACTTGCAGGTAGGGCCTGTCCAAATATAAAAATCCCTCCTCATTTG 442
consensus_11964#1      GTCGATGAAAACAGACTTGCAGGTAGTGCCTGTACAGATATAAAAATCCATCCTCATCTG 617
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      ---------------AAAAAAAAAAAAAAAAAAA-------------------------- 2174
consensus_11964#2      TTTGGCGGTT----TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 498
consensus_11964#1      TTTGACTGTTACTCTGAATTTTCATTCGGTTTAGAGTTCTGAATTCTGGATGGGATTTCA 677
consensus_11964#3      ------------------------------------------------------------
                                                                                   

consensus_11964#0      ------------------------
consensus_11964#2      AAAAAAAAACACTGTCATTGCCGT 522
consensus_11964#1      GCAAAAAAAAAAAA---------- 691
consensus_11964#3      ------------------------
                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)