These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1739 fasta sequence [TCGTCTCCAAACCCTTCCCAAAACCCTACTCCGCGCACGCGCCTCTCCTTCTAGAACCTTCTGGAACCCTCGCCCCCGCGAAGGCGGCGCCG-CCGCCGAGATGGCCTCCTCCCCCTCCGCCGTCGTCCTGCAGGCCGCCCTCGACGGCGACCTCCACCTCCTGTGTGAAATGGCCAAGAAGTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTCAGGCTCTCACAGAGGTGAGACACCAATACTTCTCGCCGCATGTGACGGGGACATTAATGTTTTAATATACCTTCTTGATCATGGTGGTGACCCAGCCATACC-TAACGCGGGGGGCTTCATGCCGCTGCAC-TACGCAGCAGAGTACGGGCATGTTGATGTTGTGAGACTATTGCTGTCCAAAGGAG-TTCATGTGGATCCTCTGAATTATAGTGGGGCCCCGCTGCACTTGGCTACCGCAAATGACCATGATCAGGTTGCGAAGGTTCTGCTTGAGCATGGTGCTGATCCCAACAGAGTTGTCAACCATGTCCTTTCACCACTCGTTGTTGCTTGCTGCAGCCACTCCTTGAAATGCATGAAGTTACTGATCAAGGCTGGTGCTGATGTGAATGATAGAAGTTCTACTGGACCAAGAACGACCCCTTTAGTGCTTGCAGTTGATGATGGATCAGCCGATATTGTCAAAATCTTGCTAGAGGCTGGAGCTGACCCTAACATTCGTAACGAG--TGGGAGGATTCCTATCATGATGGCAGCAGCTCGTGGTCAACGAGAGCTTGTTGAAATTCTGTTTCCTAGGACAAAACCAATTCCATGTCTGCCAGATTGGAGTGTTGATGGGATAATTAGAACTATGAGATTCACACGTACCGAACCTGAGGATGCAGTTCCTGTGGAAATACTAGTATCTGATTCGAAGTTAAATGCCAAGGAAGCATTTGCAGAGGGTGAATACATTACAGCAATCTACTTCTACACCAAGGCACTGGAAAAAGCCCCACTTGATGCCACCTTGTTCGCCAACCGCAGCCTCTGCTGGCTGCGGCTGCGAGAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCC-TGCGCCCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGAACTACAGAGAAGCGGCGGCGGCTTTCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGATCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGAACCCTTGAGCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGACTGCCACATCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTGTTTCCCAAACTATCTAAACTGTTTAGCTGATCACCATGCATCTGTGTCCTTTGGTCGAAAAAAAAAACGTAGTAACTAGGAGTAGTTCGCTGGGAAGGGACATCCCTTGAGAGATCAAAATAGTTTCCTGTTAGTTTCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAGCTGCACTTGTCTTCCCTTTGTGTGCGACTCTAATGCAAGCGCAGACTGGCAGCATGATATTTGTATATGATATATGTGAAGTCCGGCAGT] [+] EMBL AK101252 [TCGTCTCCAAACCCTTCCCAAAACCCTACTCCGCGCACGCGCCTCTCCTTCTAGAACCTTCTGGAACCCTCGCCCCCGCGAAGGCGGCGCCG CCGCCGAGATGGCCTCCTCCCCCTCCGCCGTCGTCCTGCAGGCCGCCCTCGACGGCGACCTCCACCTCCTGTGTGAAATGGCCAAGAAGTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTCAGGCTCTCACAGAGGTGAGACACCAATACTTCTCGCCGCATGTGACGGGGACATTAATGTTTTAATATACCTTCTTGATCATGGTGGTGACCCAGCCATACC TAACGCGGGGGGCTTCATGCCGCTGCAC TACGCAGCAGAGTACGGGCATGTTGATGTTGTGAGACTATTGCTGTCCAAAGGAG TTCATGTGGATCCTCTGAATTATAGTGGGGCCCCGCTGCACTTGGCTACCGCAAATGACCATGATCAGGTTGCGAAGGTTCTGCTTGAGCATGGTGCTGATCCCAACAGAGTTGTCAACCATGTCCTTTCACCACTCGTTGTTGCTTGCTGCAGCCACTCCTTGAAATGCATGAAGTTACTGATCAAGGCTGGTGCTGATGTGAATGATAGAAGTTCTACTGGACCAAGAACGACCCCTTTAGTGCTTGCAGTTGATGATGGATCAGCCGATATTGTCAAAATCTTGCTAGAGGCTGGAGCTGACCCTAACATTCGTAACGAG TGGGAGGATTCCTATCATGATGGCAGCAGCTCGTGGTCAACGAGAGCTTGTTGAAATTCTGTTTCCTAGGACAAAACCAATTCCATGTCTGCCAGATTGGAGTGTTGATGGGATAATTAGAACTATGAGATTCACACGTACCGAACCTGAGGATGCAGTTCCTGTGGAAATACTAGTATCTGATTCGAAGTTAAATGCCAAGGAAGCATTTGCAGAGGGTGAATACATTACAGCAATCTACTTCTACACCAAGGCACTGGAAAAAGCCCCACTTGATGCCACCTTGTTCGCCAACCGCAGCCTCTGCTGGCTGCGGCTGCGAGAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCC TGCGCCCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGAACTACAGAGAAGCGGCGGCGGCTTTCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGATCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGAACCCTTGAGCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGACTGCCACATCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTGTTTCCCAAACTATCTAAACTGTTTAGCTGATCACCATGCATCTGTGTCCTTTGGTCGAAAAAAAAAACGTAGTAACTAGGAGTAGTTCGCTGGGAAGGGACATCCCTTGAGAGATCAAAATAGTTTCCTGTTAGTTTCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAGCTGCACTTGTCTTCCCTTTGTGTGCGACTCTAATGCAAGCGCAGACTGGCAGCATGATATTTGTATATGATATATGTGAAGTCCGGCAGT] [+] EMBL C97400 [ CGCACG NCCTCTCCTTCTAGAACCTTCTGGAACCCTCGCCCCCGCGAAGGCGACGCCGCCCGANGA ATGGCCTCCTCCCCCTCCGCCGTCGTCCTGCAGGCCGCCCTCGACGGCGACCTCCACCTCCTGTGTGAAATGGCCAAGAAGTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTCAGGCTCTCACAGAGGTGAGACACCAATACTTCTCGCCGCATGTGACGGGGACATTAATGTTTTAATATACCTTCTTGATCATGGTGGTGACCCAGCCATACCTTAACGCGGGGGGCTTCATGCCGCTGCACTTACGCAGCAGAGTACGGGCATGTTGATGTTGTGAGACTATTGCTGTCCAAAGGAGTTTCATGTGGATCCTCTGAATTATAGTGGGGCCCCGCTGCACTTGGCTACCGCAAATGACCATGATCAGGTTGCGAAGGTTCTGCTTGAGCATGGTGCTGATCC ] [+] EMBL CF327620 [ ACTCCTTGAAATGCATGAAGTTACTGATCAAGGCTGGTGCTGATGTGAATGATAGAAGTTCTACTGGACCAAGAACGACCCCTTTAGTGCTTGCAGTTGATGATGGATCAGCCGATATTGTCAAAATCTTGCTAGAGGCTGGAGCTGACCCTAACATTCGTAACGAGGATGGGAGGATTCCTATCATGATGGCAGCAGCTCGTGGTCAACGAGAGCTTGTTGAAATTCTGTTTCCTAGGACAAAACCAATTCCATGTCTGCCAGATTGGAGTGTTGATGGGATAATTAGAACTATGAGATTCGCACGTACCGAACCTGAGGATGCAGTTCCTGTGGAAATACTAGTATCTGATTCGAAGTTAAATGCCAAGGAAGCATTTGCAGAGGGTGAATACATTACAGCAATCTACTTCTACACCAAGGCACTGGAAAAAGCCCCACTTGATGCCACCTTGTTCGCCAACCGCAGCCTCTGCTGGCTGCGGCTGCGAGAGGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCCTTGCGCCCTGGTTGGT ] [-] EMBL CF327621 [ CAGAGAAGCGGCGGCGGCTTTCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGATCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGAACCCTTGAGCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGACTGCCACATCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTGTTTCCCAAACTATTTAAACTGTTTAGCTGATCACCATGCATCTGTGTCCTTTGGTCGAAAAAAAAAACGTAGTAACTAGGAGTAGTTCGCTGGGAAGGGACATCCCTTGAGAGATCAAAATAGTTTCCTGTTAGTTTCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAGCTGCACTTGTCTTCCCTTTGTGTGCGACTCTAATGCAAGCGCAGA ] consensusID : consensus_11969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1546 fasta sequence [CCGCTTCCTCTCCTCTCCAAAACCCTCCCCAAAAACCACGCCCCCGCCTTCCAGAACCTTCTGGAACCGCGATGGCCCCCTCCCCTTCCGACGTCGCCCTGCAGGCCGCCCAGGACGGCAACCTCCGCCTCCTCAGGAAGATGGCGAAGAAGTTGGATTTGCGAGGAGTCAAGGACAAGAATGGCCTAAGCGCGCTTCACTTCGCTGCAAGCCATGGGCACCTGGATTGCTGCAAGTTCCTTGTGGAGGAATCGGGCCTTGATGTCAACTCGGTTGGTCACAAAGGTGAAACGCCAGTGTTCTATGCCGCGATCGATGGGAACGTTCAGGTTTTGGGGTACCTTCTTGATCATGGTGGTGACCCGGTGAAACCCGAGGAGAGGGGCTGCACGCCGCTGCACAATGCGGCAGAGAATGGGCATGATGAGGCTGTAAGACTATTGCTGTCCAAAGGAGTTCATGTGGATCCTCTGAATTATCGTGGGGCCCCACTGCACTTGGCTGCCTCAAAGGACCGGGTTCAAGCCATGAAGGTTCTGCTTGAACATGGTGCTGATCCCAACAGAGTTGTCAATCATATCTTTTCACCACTCATGATGGCATGCTGCGGGCACTCCTTGAAATGCGTGAAGCTACTTGTTGAGGCTGGCGCTGATGTGAACGGGGCTGGAGCTGACCCTAACATTCCTGACGAGGAAGGGAGGATTCCTATCATGGTGGCAGCAGCTCGTGGTCAACGAGAGCTTGTTGAAATTCTATTTCCTCGGACAAAACCTATTCCATGTCTGCCAGATTGGAATGTTGACGGGATAATTAGAACTATGAGAACCACACGTATTGAACCTCAGTCTGCTATTCCTGTGGAAGAACAAGTGTCTGATGCAAAGTCGAAAGGAAAGGAAGCATTTGCAAAGGGTGACTACCTTACAGCCATCTACTTCTACACCCTGGCAATGGATAAATCCCCACTTGATGCCACCTTGTTTGCCAACCGGAGCCTTTGCTGGCTGCGGCAGCGAGAAGGGGACAGAGCTTTACTGGATGCACAGCAGTGCAGGATGCTGCGCCCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCAGCTCTCAGTTTCATGAAGGACTACAAAGGAGCAGTGGACGCATTCGGGGAGGCACTGAAACTTGACCCCATGAGCGACGAGGTCAAGAACGCGTTAAGGGAGGCGATCGAGTGTCTGAAGAGAGCTGCTTGATCTGAAGATCCGAATAACCCTTGAGCAGCTACTGCATCGTCCTTTTGGCCTCACCTCACCTGTCAGACTGCTTCACATCTTTCCACTGTAACTACCAACGACTAGGTTTTGCAAACCATGCTGACTGTTTAGCTATCTCTGCTGTCAGAGTACGTATGGCAGGAACATGCACTGTCTTTCGGTCAGAAACCATATGGTTTGCTAGGTCATCATCACCCATACATATGCAGTTGCACTTTCTTCCATTTTGTGCGCAACTCATGCAAGTGCAAACTGGCAGTAATAGTATATGATATGTAAAGTTCGTCAGT] [+] EMBL AK063560 [CCGCTTCCTCTCCTCTCCAAAACCCTCCCCAAAAACCACGCCCCCGCCTTCCAGAACCTTCTGGAACCGCGATGGCCCCCTCCCCTTCCGACGTCGCCCTGCAGGCCGCCCAGGACGGCAACCTCCGCCTCCTCAGGAAGATGGCGAAGAAGTTGGATTTGCGAGGAGTCAAGGACAAGAATGGCCTAAGCGCGCTTCACTTCGCTGCAAGCCATGGGCACCTGGATTGCTGCAAGTTCCTTGTGGAGGAATCGGGCCTTGATGTCAACTCGGTTGGTCACAAAGGTGAAACGCCAGTGTTCTATGCCGCGATCGATGGGAACGTTCAGGTTTTGGGGTACCTTCTTGATCATGGTGGTGACCCGGTGAAACCCGAGGAGAGGGGCTGCACGCCGCTGCACAATGCGGCAGAGAATGGGCATGATGAGGCTGTAAGACTATTGCTGTCCAAAGGAGTTCATGTGGATCCTCTGAATTATCGTGGGGCCCCACTGCACTTGGCTGCCTCAAAGGACCGGGTTCAAGCCATGAAGGTTCTGCTTGAACATGGTGCTGATCCCAACAGAGTTGTCAATCATATCTTTTCACCACTCATGATGGCATGCTGCGGGCACTCCTTGAAATGCGTGAAGCTACTTGTTGAGGCTGGCGCTGATGTGAACGGGGCTGGAGCTGACCCTAACATTCCTGACGAGGAAGGGAGGATTCCTATCATGGTGGCAGCAGCTCGTGGTCAACGAGAGCTTGTTGAAATTCTATTTCCTCGGACAAAACCTATTCCATGTCTGCCAGATTGGAATGTTGACGGGATAATTAGAACTATGAGAACCACACGTATTGAACCTCAGTCTGCTATTCCTGTGGAAGAACAAGTGTCTGATGCAAAGTCGAAAGGAAAGGAAGCATTTGCAAAGGGTGACTACCTTACAGCCATCTACTTCTACACCCTGGCAATGGATAAATCCCCACTTGATGCCACCTTGTTTGCCAACCGGAGCCTTTGCTGGCTGCGGCAGCGAGAAGGGGACAGAGCTTTACTGGATGCACAGCAGTGCAGGATGCTGCGCCCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCAGCTCTCAGTTTCATGAAGGACTACAAAGGAGCAGTGGACGCATTCGGGGAGGCACTGAAACTTGACCCCATGAGCGACGAGGTCAAGAACGCGTTAAGGGAGGCGATCGAGTGTCTGAAGAGAGCTGCTTGATCTGAAGATCCGAATAACCCTTGAGCAGCTACTGCATCGTCCTTTTGGCCTCACCTCACCTGTCAGACTGCTTCACATCTTTCCACTGTAACTACCAACGACTAGGTTTTGCAAACCATGCTGACTGTTTAGCTATCTCTGCTGTCAGAGTACGTATGGCAGGAACATGCACTGTCTTTCGGTCAGAAACCATATGGTTTGCTAGGTCATCATCACCCATACATATGCAGTTGCACTTTCTTCCATTTTGTGCGCAACTCATGCAAGTGCAAACTGGCAGTAATAGTATATGATATGTAAAGTTCGTCAGT] consensusID : consensus_11969#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 789 fasta sequence [ATTCCATGTTCTCCCAGATTTGGATTTTTTNAATGGGATTANTTTAGAACTTTTGAGAATCCACACGTACCGAACCTGGAGGAATGCCAGTTCCCTGTGNAAANACTAGTATCTGATTTCGAANTTAAATGCCCAAGGAAGCTTTGNCAGAGGTTGATTACATTACANCATTCTACTTCTAACACCAGGNCACTGGAAAAAGCCCCACTTGATGCCCACNTTGTTCGCCAACCGCAGCNTCTGCTGGCTNCGGCTNCGAGAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCCTGCGCCCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGAACTACAGTAGAAGCGGCGGCGGCTTTCCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGATCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGAACCCTTGAGCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGACTGCCACATCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTGTTTCCCAAACTATCTAAACTGTTTAGCTGATCACCATGCATCTGTGTCCTTTGGTCGAAAAAAAAAACGTAGTAACTAGGAGTAGTTCGCTGGGAAGGGACATCCCTTGAGAGATCAAAATAGTTTCCTGTTAGTTTCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAAAAAAAAAAA] [+] EMBL C97401 [ATTCCATGTTCTCCCAGATTTGGATTTTTTNAATGGGATTANTTTAGAACTTTTGAGAATCCACACGTACCGAACCTGGAGGAATGCCAGTTCCCTGTGNAAANACTAGTATCTGATTTCGAANTTAAATGCCCAAGGAAGCTTTGNCAGAGGTTGATTACATTACANCATTCTACTTCTAACACCAGGNCACTGGAAAAAGCCCCACTTGATGCCCACNTTGTTCGCCAACCGCAGCNTCTGCTGGCTNCGGCTNCGAGAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCCTGCGCCCTGGTTGGTCCAAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGAACTACAGTAGAAGCGGCGGCGGCTTTCCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGATCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGAACCCTTGAGCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGACTGCCACATCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTGTTTCCCAAACTATCTAAACTGTTTAGCTGATCACCATGCATCTGTGTCCTTTGGTCGAAAAAAAAAACGTAGTAACTAGGAGTAGTTCGCTGGGAAGGGACATCCCTTGAGAGATCAAAATAGTTTCCTGTTAGTTTCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAAAAAAAAAAA] consensusID : consensus_11969#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [TTTTTTTTTTTTTGGGGGGGATGACGAATTCGGGTATTGATTTCGTACGGTTTGCTGGCTAGTTTAGATGGAAATCCTCCAATTCGAGGATAGATGGATTGGATTTACTCGATTTCTACGGTTTGGACTCCCATTTGTGCGGATTGCTGAATTAGCTACAGTATATTTTCCCCCCTTTTTTTAATCTGTTTGATTCACTTACGTGGCTGTGTTGTTCGGATTTTGCTGCTGCTGGTGGAATCGATCCTTTGTAGAGATGGCGAAGAAGTTGGATTTGCGAGGAGTCAAGGACAAGAATGGCCTAAGCGCGCTTCACTTCGCTGCAAGCCATGGGCACCTGGATTGCTGCAAGTTCCTTGTGGAGGAATCGGGCCTTGATGTCAACTCGGTTGGTCACAAAGGTGAAACGCCAGTGTTCTATGCCGCGATCGATGGGAACATTCAGGTTTTGGGGTACCTTCTTGATCATGGTGGTGACCCGGTGAAACCCGAGGAGAGGGGCTGCACGCCGCTGCACAATGCGGCAGAGAATGGTCTGCTTACTGTGCTCTTCGGTTCACTTGCCGGATCTGGATTTTAAGGATGGCTTATATGGCATTTCTTGCATACCAATGACATGATATCTGTCTGTGGATTATCTTGGTTGAACCTTTGTGCTAATTTT] [+] EMBL CA759758 [TTTTTTTTTTTTTGGGGGGGATGACGAATTCGGGTATTGATTTCGTACGGTTTGCTGGCTAGTTTAGATGGAAATCCTCCAATTCGAGGATAGATGGATTGGATTTACTCGATTTCTACGGTTTGGACTCCCATTTGTGCGGATTGCTGAATTAGCTACAGTATATTTTCCCCCCTTTTTTTAATCTGTTTGATTCACTTACGTGGCTGTGTTGTTCGGATTTTGCTGCTGCTGGTGGAATCGATCCTTTGTAGAGATGGCGAAGAAGTTGGATTTGCGAGGAGTCAAGGACAAGAATGGCCTAAGCGCGCTTCACTTCGCTGCAAGCCATGGGCACCTGGATTGCTGCAAGTTCCTTGTGGAGGAATCGGGCCTTGATGTCAACTCGGTTGGTCACAAAGGTGAAACGCCAGTGTTCTATGCCGCGATCGATGGGAACATTCAGGTTTTGGGGTACCTTCTTGATCATGGTGGTGACCCGGTGAAACCCGAGGAGAGGGGCTGCACGCCGCTGCACAATGCGGCAGAGAATGGTCTGCTTACTGTGCTCTTCGGTTCACTTGCCGGATCTGGATTTTAAGGATGGCTTATATGGCATTTCTTGCATACCAATGACATGATATCTGTCTGTGGATTATCTTGGTTGAACCTTTGTGCTAATTTT] consensusID : consensus_11969#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 502 fasta sequence [TTTTTTTTTGGAGGCGAGCATCTCCCATTGATTCGGCAAGGTGCGATCGTGTGGTGTACTGGTTTGCAATGCACGATTCCGGATGTGGGGGGAAATCTGGGGTGGTTGCAGCTGCGATGTTCTCTGCGCGGTAGCTCATAGCAAAAATCTGGGTGGCGATTGACGAATCGGGTGTTGATTTCGTTCTGTTTGATCGCTGGTTTAGGTGGAAATACCTAATTGGGGGCTATGTGTATTGCATAGTTTGGAGATTTCTGAATTAGCCTTTTGTTTCCCCCAAATTTTCTGTTTGATTCACTCGCAATCTATCTATCTATCTATCCTGGGTAGAAATGGCCAAGAAGTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTCAGGCTCTCACAGAGGTGCGTGCACATCAATGATTTCTCG] [-] EMBL AU082971 [TTTTTTTTTGGAGGCGAGCATCTCCCATTGATTCGGCAAGGTGCGATCGTGTGGTGTACTGGTTTGCAATGCACGATTCCGGATGTGGGGGGAAATCTGGGGTGGTTGCAGCTGCGATGTTCTCTGCGCGGTAGCTCATAGCAAAAATCTGGGTGGCGATTGACGAATCGGGTGTTGATTTCGTTCTGTTTGATCGCTGGTTTAGGTGGAAATACCTAATTGGGGGCTATGTGTATTGCATAGTTTGGAGATTTCTGAATTAGCCTTTTGTTTCCCCCAAATTTTCTGTTTGATTCACTCGCAATCTATCTATCTATCTATCCTGGGTAGAAATGGCCAAGAAGTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTCAGGCTCTCACAGAGGTGCGTGCACATCAATGATTTCTC ] [-] EMBL OSC3351 [ ctGTTT CAAT CACAAT CGGATGT GGGGGAAATCT GGGTGGTTGCAACTGCAATGTTCCCTGCGCGGTAGCTCATAGCAAAAATCTGGGTGGCGATTGACGAATCGGNTGTTGATTTCGTTCTGTTTGATCGCTGGTTTAGGTGGAAATACCTAATTGGGGGCTATGTGTATTGCATAGTTTGGAGATTTCTGAATTAGCCTTTTGTTTCCCCCAAATTTTCTGTTTGATTCACTCGCAATCTATCTATCTATCTATCCTGGGTAGAAATGGCCAAGAAGTTGGA CTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAGCTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTCAGGCTCTCACAGAGGTGCGTGCACATCAATGATTTCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11969#0 TCGTCTCCAAACCCTTCCCAAAACCCTACTCCGCGCACGCGCCTCTCCTTCTAGAACCTT 60 consensus_11969#2 ------------------------------------------------------------ consensus_11969#1 -----------------------------CCGCTTCCTCTCCTCTCCAAAACCCTCCCCA 31 consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 CTGGAACCCTCGCCCCCGCGAAGGCGGCGCCGCCGCCGAGATGGCCTCCTCCCCCTCCGC 120 consensus_11969#2 ------------------------------------------------------------ consensus_11969#1 AAAACCACGCCCCCGCCTTCCAGAACCTTCTGGAACCGCGATGGCCCCCTCCCCTTCCGA 91 consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 CGTCGTCCTGCAGGCCGCCCTCGACGGCGACCTCCACCTCCTGTGTGAAATGGCCAAGAA 180 consensus_11969#2 ------------------------------------------------------------ consensus_11969#1 CGTCGCCCTGCAGGCCGCCCAGGACGGCAACCTCCGCCTCCTCAGGAAGATGGCGAAGAA 151 consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 GTTGGACCTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCACTTGGCTGCAAG 240 consensus_11969#2 ------------------------------------------------------------ consensus_11969#1 GTTGGATTTGCGAGGAGTCAAGGACAAGAATGGCCTAAGCGCGCTTCACTTCGCTGCAAG 211 consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 CTATGGGCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTTGATGTCAACTC 300 consensus_11969#2 ------------------------------------------------------------ consensus_11969#1 CCATGGGCACCTGGATTGCTGCAAGTTCCTTGTGGAGGAATCGGGCCTTGATGTCAACTC 271 consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 AGGCTCTCACAGAGGTGAGACACCAATACTTCTCGCCGCATGTGACGGGGACATTAATGT 360 consensus_11969#2 ------------------------------------------------------------ consensus_11969#1 GGTTGGTCACAAAGGTGAAACGCCAGTGTTCTATGCCGCGATCGATGGGAACGTTCAGGT 331 consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 TTTAATATACCTTCTTGATCATGGTGGTGACCCAGCCATACCTAACGCGGGGGGCTTCAT 420 consensus_11969#2 ------------------------------------------------------------ consensus_11969#1 TTTGGGGTACCTTCTTGATCATGGTGGTGACCCGGTGAAACCCGAGGAGAGGGGCTGCAC 391 consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 GCCGCTGCACTACGCAGCAGAGTACGGGCATGTTGATGTTGTGAGACTATTGCTGTCCAA 480 consensus_11969#2 ------------------------------------------------------------ consensus_11969#1 GCCGCTGCACAATGCGGCAGAGAATGGGCATGATGAGGCTGTAAGACTATTGCTGTCCAA 451 consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 AGGAGTTCATGTGGATCCTCTGAATTATAGTGGGGCCCCGCTGCACTTGGCTACCGCAAA 540 consensus_11969#2 ------------------------------------------------------------ consensus_11969#1 AGGAGTTCATGTGGATCCTCTGAATTATCGTGGGGCCCCACTGCACTTGGCTGCCTCAAA 511 consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 TGACCATGATCAGGTTGCGAAGGTTCTGCTTGAGCATGGTGCTGATCCCAACAGAGTTGT 600 consensus_11969#2 ------------------------------------------------------------ consensus_11969#1 GGACCGGGTTCAAGCCATGAAGGTTCTGCTTGAACATGGTGCTGATCCCAACAGAGTTGT 571 consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 CAACCATGTCCTTTCACCACTCGTTGTTGCTTGCTGCAGCCACTCCTTGAAATGCATGAA 660 consensus_11969#2 ------------------------------------------------------------ consensus_11969#1 CAATCATATCTTTTCACCACTCATGATGGCATGCTGCGGGCACTCCTTGAAATGCGTGAA 631 consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 GTTACTGATCAAGGCTGGTGCTGATGTGAATGATAGAAGTTCTACTGGACCAAGAACGAC 720 consensus_11969#2 ------------------------------------------------------------ consensus_11969#1 GCTACTTGTTGAGGCTGGCGCTGATGTGAACGGGGCTGGAGCTGACC------------- 678 consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 CCCTTTAGTGCTTGCAGTTGATGATGGATCAGCCGATATTGTCAAAATCTTGCTAGAGGC 780 consensus_11969#2 ------------------------------------------------------------ consensus_11969#1 ------------------------------------------------------------ consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 TGGAGCTGACCCTAACATTCGTAACGAGTGGGAGGATTCCTATCATGATGGCAGCAGCTC 840 consensus_11969#2 ------------------------------------------------------------ consensus_11969#1 ---------CTAACATTCCTGACGAGGAAGGGAGGATTCCTATCATGGTGGCAGCAGCTC 729 consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 GTGGTCAACGAGAGCTTGTTGAAATTCTGTTTCCTAGGACAAAACCAATTCCATGT-CTG 899 consensus_11969#2 -----------------------------------------------ATTCCATGTTCTC 13 consensus_11969#1 GTGGTCAACGAGAGCTTGTTGAAATTCTATTTCCTCGGACAAAACCTATTCCATGT-CTG 788 consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 CCAGATTGGAGTGTT---GATGGGATAATT--AGAACTAT--GAGATTCACACGTACCGA 952 consensus_11969#2 CCAGATTTGGATTTTTTNAATGGGATTANTTTAGAACTTTTGAGAATCCACACGTACCGA 73 consensus_11969#1 CCAGATTGGAATGTT---GACGGGATAATT--AGAACTAT--GAGAACCACACGTATTGA 841 consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 -------------------------------------------------TTTTTTTTTGG 11 consensus_11969#0 ACCTGAGG--ATGC-AGTTCC-TGTGGAAATACTAGTATCTGATT-CGAAGTTAAATGCC 1007 consensus_11969#2 ACCTGGAGGAATGCCAGTTCCCTGTGNAAANACTAGTATCTGATTTCGAANTTAAATGCC 133 consensus_11969#1 ACCTCAGT--CTGCTA-TTCC-TGTGGAAGAACAAGTGTCTGATG-CAAAGTCGAAAGGA 896 consensus_11969#3 ------------------------------------------------------------ consensus_11969#4 AGGCGAGCATCTCCCATTGATTCGGCAAGGTGCGATCGTGTGGTG----TACTGGTTTGC 67 consensus_11969#0 -AAGGAAGCATTTGCAGAGGGTGAATACATTACAGCAATCTACTTCTA-CACCAAGGCAC 1065 consensus_11969#2 CAAGGAAGCTTTGNCAGAGGTTGATTACATTACANCATTCTACTTCTAACACCAGGNCAC 193 consensus_11969#1 -AAGGAAGCATTTGCAAAGGGTGACTACCTTACAGCCATCTACTTCTA-CACCCTGGCAA 954 consensus_11969#3 ------TTTTTTTTTTTTTGGGGGGGATGACGAATTCGGGTATTGATTTCGTACGGTTTG 54 consensus_11969#4 AATGCACGATTCCGGATGTGGGGGGAAATCTGGGGT-GGTTGCAGCTGCGATGTTCTCTG 126 * * * * * * consensus_11969#0 TGGAAAAAGCCCCACTTGATGCC-ACCTTGTTCGCCAACCGCAGCCTCTGCTGGCTGCGG 1124 consensus_11969#2 TGGAAAAAGCCCCACTTGATGCCCACNTTGTTCGCCAACCGCAGCNTCTGCTGGCTNCGG 253 consensus_11969#1 TGGATAAATCCCCACTTGATGCC-ACCTTGTTTGCCAACCGGAGCCTTTGCTGGCTGCGG 1013 consensus_11969#3 CTGGCTAGTTTAGATGGAAATCC--TCCAATTCGAGGATAGATGGATTGGATTTACTCGA 112 consensus_11969#4 CGCGGTAGCTCATAGCAAAAATC--T---GGGTGGCGATTGACGAATCGGGTG---TTGA 178 * * * * * * * * * * * * consensus_11969#0 CTGCGAGAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCCTGCGCCCTGGT 1184 consensus_11969#2 CTNCGAGAAGGAGACGTCGCTCTATTGGATGCGCGACGCTGCAAAGCCCTGCGCCCTGGT 313 consensus_11969#1 CAGCGAGAAGGGGACAGAGCTTTACTGGATGCACAGCAGTGCAGGATGCTGCGCCCTGGT 1073 consensus_11969#3 TTTC-TACGG-----TTTGGACTCCCATTTGTGCGGAT-TGCTGAATTAGCTACAGTATA 165 consensus_11969#4 TTTCGTTCTG-----TTTGATCGCTGGTTTAGGTGGAAATACCTAATTGGGGGCTATGTG 233 * * * * * * * * consensus_11969#0 TGGTCCAAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGAACTACAG-AGA 1243 consensus_11969#2 TGGTCCAAGGCATGGTACCGTGAGGGCGCGGCCCTCAGTCTCCTGAAGAACTACAGTAGA 373 consensus_11969#1 TGGTCCAAGGCATGGTACCGTGAGGGCGCAGCTCTCAGTTTCATGAAGGACTACAA-AGG 1132 consensus_11969#3 TTTTCCCCCCTTT------TTTTAATC-TGTTTGATTCACTTACGTGGCTGTGTTGTTCG 218 consensus_11969#4 TATTGCATAGTTTGGAGATTTCTGAAT-TAGCCTTTTGTTTCCCCCAAATTTTCTGTTTG 292 * * * * * * * consensus_11969#0 AGCGGCGGCGGCTTTC-ACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGA 1302 consensus_11969#2 AGCGGCGGCGGCTTTCCACGGAAGCGCTGAAACTTGACCCTGAGAACTACGAGATCAAGA 433 consensus_11969#1 AGCAGTGGACGCATTC-GGGGAGGCACTGAAACTTGACCCCATGAGCGACGAGGTCAAGA 1191 consensus_11969#3 GATT-TTGCTGCTGCTGGTGGA---ATCGATCCTTTGTAGAGATGGCGAAGAAGTTGGAT 274 consensus_11969#4 -ATT-CACTCGCAATCTATCTATCTATCTATCCTGGGTAGAAATGGCCAAGAAGTTGGAC 350 ** * * ** * * ** * consensus_11969#0 TCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGA 1362 consensus_11969#2 TCGCGTTAAGAGAGGCGTTGGAGTGTCGGAAGAGAGCTGCACGCTCTGAAGAAGATAAGA 493 consensus_11969#1 ACGCGTTAAGGGAGGCGATCGAGTGTCTGAAGAGAGCTGCTTGATCTGAAGATCCGAATA 1251 consensus_11969#3 TTGCGAGGAGTCAAGGACAAGAATGGCCTAAGCGCGCTTCAC-TTCGCTGCAAGCCATGG 333 consensus_11969#4 CTGCGGGGATTCAAGGACATGAATGGGCGAAATGCGCTTCAC-TTGGCTGCAAGCTATGG 409 *** * * * ** ** ** * *** * * * * consensus_11969#0 ACCCTTGAGCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGA 1422 consensus_11969#2 ACCCTTGAGCTGCTGCTGCTGCTGCATCAGTGCATCACCCTTTTGACCTCACCTTTCAGA 553 consensus_11969#1 ACCCTTGAGCAGCTACTGC--------------ATCGTCCTTTTGGCCTCACCTCAC--- 1294 consensus_11969#3 GCACCTGGATTGCTGCAAGTTCCTTGTGGAGGAATCGGGCCTT-GATGTCAACT--CGGT 390 consensus_11969#4 GCATCTGGAGATCTGCAAGTTCCTGGTGGAGGAATCGGGCCTT-GATGTCAACT--CAGG 466 * ** ** * *** * ** * *** ** * consensus_11969#0 CTGCCACATCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTG-TTTCCCA 1481 consensus_11969#2 CTGCCACATCTCTGATCTCACATTCTCTCTACGTGTAACTACCAACGGCCTG-TTTCCCA 612 consensus_11969#1 CTGTCAGACTGCT----TCACAT-CTTTCCAC-TGTAACTACCAACGACTAGGTTTTGCA 1348 consensus_11969#3 TGGTCACAAAGGTGAA---ACGCCAGTGTTCTATGCCGCGATCGATGGGAAC--ATTCAG 445 consensus_11969#4 CTCTCACAGAGGTGCGTGCACATCAATGATTTCTCG------------------------ 502 ** * * ** * consensus_11969#0 AACTATCTAAACTGTTTAGCTGATCACCATGCATCTGTGTCCTT-TGGTCGAAAAAAAAA 1540 consensus_11969#2 AACTATCTAAACTGTTTAGCTGATCACCATGCATCTGTGTCCTT-TGGTCGAAAAAAAAA 671 consensus_11969#1 AACCATGCTGACTGTTTAGCT-ATCTCTGC-TGTCAGAGTACGTATGGCAGGAACATGCA 1406 consensus_11969#3 GTTTTGGGGTACCTTCTTGATCATGGTGGTGACCCGGTGAAACCCGAGGAGAGGGGCTGC 505 consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 ACGTAGT--AACTAGGAGTAGTTCGCTGGGAAGGGACATCCCTTGAGAGATCAAAATAGT 1598 consensus_11969#2 ACGTAGT--AACTAGGAGTAGTTCGCTGGGAAGGGACATCCCTTGAGAGATCAAAATAGT 729 consensus_11969#1 CTGTCTTTCGGTCAGAAACCATATGGTTTGCTAGGTCATCATCACCCATACATATGCAGT 1466 consensus_11969#3 ACGCCGCTGCACAATGCGGCAGAGAATGGTCTGCTTACTGTGCTCTTCGGTTCACTTGCC 565 consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 TTCCTGTTAGTTTCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAGCTGCACTTG 1658 consensus_11969#2 TTCCTGTTAGTTTCCTGTAGTTTGATAGATTATTGTCGATACATATTGCAAAAAAAAAAA 789 consensus_11969#1 TGCACTT---TCTTCCATTTTGTGCGCAACTCATGCAAGTGCAAACTGGCAGTAATAGTA 1523 consensus_11969#3 GGATCTGGATTTTAAGGATGGCTTATATGGCATTTCTTGCATACCAATGACATGATATCT 625 consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 TCTTCCCTTTGTGTGCGACTCTAATGCAAGCGCAGACTGGCAGCATGATATTTGTATATG 1718 consensus_11969#2 ------------------------------------------------------------ consensus_11969#1 TATGATATGTAAAGTTCGTCAGT------------------------------------- 1546 consensus_11969#3 GTCTGTGGATTATCTTGGTTGAACCTTTGTGCTAATTTT--------------------- 664 consensus_11969#4 ------------------------------------------------------------ consensus_11969#0 ATATATGTGAAGTCCGGCAGT 1739 consensus_11969#2 --------------------- consensus_11969#1 --------------------- consensus_11969#3 --------------------- consensus_11969#4 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||