These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1197#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2138 fasta sequence [CTCCACGCCCTAATTCGCCGCCGCCGCTTACTCACCTCCTCGCCTGTCGCCTCTCGGTGCGAGTTCTACTCACCGGCGCCGGCGACGGCGACGACCCTGGTTGGCGGTTGAATCGTCGTCCTCGGCGTGTGATGGTGGTGGCCATGGCGACGAAGGAGGAGGAGGGTGGGCCGTCGAGCCGCGTGCCTCACCTTCCGTGGATGCGGAACCCCGTCGACATCGACTCCTTCTCCGGCTGCCCCGTCGCGCACCTTCCCCGTCTCGATCCCAGGTTGGTGAAGCCATTGCAGAGAATGGGGATAGAATCATTTTTTCCAGTTCAAGTAGCAGCATGGCTGGAAACTATTGGTCCTGGTGCTTTTGAGAGGGATATCTGTATTAACTCCCCAACTGGATCTGGCAAGACTCTTGCTTATGCTTTGCCTATCGTTCAAATGCTCGCTACTCGAAAAGTAAGGTGCTTGCGTGCTTTGGTTGTGCTACCTACAAGGGATTTAGCATTGCAGGTTAAAGAGGTTTTTGATGCTATTGCTCCTGTTGTGGGCTTGTCAGTAGGCTCAGCAGTTGGTCAATCATCAATAGCGGATGAAGTTTCAAATCTTATTGAGAAGTCTAAACAAGGGCTTTTCCCAAGTCTTGATGAAGAATATATCCAAATGGAACCACAGACTAAAGTTGATATATTGGTGGCAACTCCTGGAAGACTGATGGATCATATCAGCATGACAAAAGGTTTCAGCCTGGAGCATCTTCAATACCTGGTTGTTGATGAGACGGACAGGATGTTGAGAGAAGCTTATCAGTCTTGGTTGCCAACAGTTATCCAGCTTACTCGCTCGAGTGATCAAAACCATTCCTGGTCAGACATGAACGGAGAAACTCTACTGCATCCATTGACTACCATTAGACGATCGGGTGTTGAGCGTGGTTTTAAAGGTAAATCCTTTCCAAGATTGGCGAAGATAGTTTTGTCTGCCACACTGACTCAAGATCCTAGCAAGCTTTCTCAACTTGAGTTGCAACATCCCTTGCTGTTGAATAGTGGAAAGAAGCGCTACAGAATTCCAACAAAGCTTCAGTCCTACAAGCTGGTCTGTAAATCAAATTTAAAACCACTATCTCTGATTGTTCTTCTCCAAGAGCTGCGTGGGGAAAAATGTTTAGTTTTTACTTCATCTGTGGAATCCAGTCACAGACTGAGCACCTTGCTGGAATTTTTCGAAGACTTGCCCTTCAAATTTAGTGAATATTCACGTTTGCAACGTGAATCGACTCGGAGGAAGACACTGGATGCCTTCAAGGAAGGGAAGATAGATGTTCTGATTGGTACAGATAGAATGGCTCGAGGAATTCATATTGATGGCTTAAGATATGTTATCAATTATGACATGCCACCGTATGTAAAAACATACATCCACCGAGCAGGTCGTACTGCTCGGGCGGGAGAGTCTGGTTCTTGCTTCACATTTTTAAGGAAACATGAGGTTAAGGCTTTTGACAAAATGCTCAAGAAGGCAGATAATTCTAGCTGCAGTCTTCATTCACTACCAGAGGAATCGGTAGAAACCCTTCGCCCAGTTTTTTCCTCTGCTCTAAAGAAATTGGAAGAGTCTCTTGAATCAGAAGCAACAAAGAAATCTAAGTCGGGAGATAAAGCGCCTAATGCTTCTAAAAGAAAGAGAACCATCAATACGTGAAGCAGTATAGATTAGTTGAAGTTCTAATTTATTCTTTGTATGATGTATCTGCATCTGCTACATAGATTTGGTGATTCTCGCCTATGATAATTCTGCAACAGGCTCAGCATTTAATCATGGATGTCCAAAACAAGAGGGATGGTTTGATGTGTCATGTAATCCATTTGCCGTGCAATCCCCAAGCAGCTTTCCCCATCCCTGCAACCTGCTGCTTATTTTTGGTGCACGGTACAGTAGTTCTCTTCTGCTTTTACACCAGGGAAGGAATTCTTCTTTCCTTCTGTAGTTATAATACATCCACTGCTTTTCATGGCTAGGAAGGAATCTACCCCAAAGTAAAGTTGGGTACGTTCACATCAATGTATCGTCGCTGTTAACCTTTTTGTTAGGCTTTACACTTGAAATATCTATTACTATTACAGTCTCTGTTAGTAATGCGGT] [+] EMBL AK105305 [CTCCACGCCCTAATTCGCCGCCGCCGCTTACTCACCTCCTCGCCTGTCGCCTCTCGGTGCGAGTTCTACTCACCGGCGCCGGCGACGGCGACGACCCTGGTTGGCGGTTGAATCGTCGTCCTCGGCGTGTGATGGTGGTGGCCATGGCGACGAAGGAGGAGGAGGGTGGGCCGTCGAGCCGCGTGCCTCACCTTCCGTGGATGCGGAACCCCGTCGACATCGACTCCTTCTCCGGCTGCCCCGTCGCGCACCTTCCCCGTCTCGATCCCAGGTTGGTGAAGCCATTGCAGAGAATGGGGATAGAATCATTTTTTCCAGTTCAAGTAGCAGCATGGCTGGAAACTATTGGTCCTGGTGCTTTTGAGAGGGATATCTGTATTAACTCCCCAACTGGATCTGGCAAGACTCTTGCTTATGCTTTGCCTATCGTTCAAATGCTCGCTACTCGAAAAGTAAGGTGCTTGCGTGCTTTGGTTGTGCTACCTACAAGGGATTTAGCATTGCAGGTTAAAGAGGTTTTTGATGCTATTGCTCCTGTTGTGGGCTTGTCAGTAGGCTCAGCAGTTGGTCAATCATCAATAGCGGATGAAGTTTCAAATCTTATTGAGAAGTCTAAACAAGGGCTTTTCCCAAGTCTTGATGAAGAATATATCCAAATGGAACCACAGACTAAAGTTGATATATTGGTGGCAACTCCTGGAAGACTGATGGATCATATCAGCATGACAAAAGGTTTCAGCCTGGAGCATCTTCAATACCTGGTTGTTGATGAGACGGACAGGATGTTGAGAGAAGCTTATCAGTCTTGGTTGCCAACAGTTATCCAGCTTACTCGCTCGAGTGATCAAAACCATTCCTGGTCAGACATGAACGGAGAAACTCTACTGCATCCATTGACTACCATTAGACGATCGGGTGTTGAGCGTGGTTTTAAAGGTAAATCCTTTCCAAGATTGGCGAAGATAGTTTTGTCTGCCACACTGACTCAAGATCCTAGCAAGCTTTCTCAACTTGAGTTGCAACATCCCTTGCTGTTGAATAGTGGAAAGAAGCGCTACAGAATTCCAACAAAGCTTCAGTCCTACAAGCTGGTCTGTAAATCAAATTTAAAACCACTATCTCTGATTGTTCTTCTCCAAGAGCTGCGTGGGGAAAAATGTTTAGTTTTTACTTCATCTGTGGAATCCAGTCACAGACTGAGCACCTTGCTGGAATTTTTCGAAGACTTGCCCTTCAAATTTAGTGAATATTCACGTTTGCAACGTGAATCGACTCGGAGGAAGACACTGGATGCCTTCAAGGAAGGGAAGATAGATGTTCTGATTGGTACAGATAGAATGGCTCGAGGAATTCATATTGATGGCTTAAGATATGTTATCAATTATGACATGCCACCGTATGTAAAAACATACATCCACCGAGCAGGTCGTACTGCTCGGGCGGGAGAGTCTGGTTCTTGCTTCACATTTTTAAGGAAACATGAGGTTAAGGCTTTTGACAAAATGCTCAAGAAGGCAGATAATTCTAGCTGCAGTCTTCATTCACTACCAGAGGAATCGGTAGAAACCCTTCGCCCAGTTTTTTCCTCTGCTCTAAAGAAATTGGAAGAGTCTCTTGAATCAGAAGCAACAAAGAAATCTAAGTCGGGAGATAAAGCGCCTAATGCTTCTAAAAGAAAGAGAACCATCAATACGTGAAGCAGTATAGATTAGTTGAAGTTCTAATTTATTCTTTGTATGATGTATCTGCATCTGCTACATAGATTTGGTGATTCTCGCCTATGATAATTCTGCAACAGGCTCAGCATTTAATCATGGATGTCCAAAACAAGAGGGATGGTTTGATGTGTCATGTAATCCATTTGCCGTGCAATCCCCAAGCAGCTTTCCCCATCCCTGCAACCTGCTGCTTATTTTTGGTGCACGGTACAGTAGTTCTCTTCTGCTTTTACACCAGGGAAGGAATTCTTCTTTCCTTCTGTAGTTATAATACATCCACTGCTTTTCATGGCTAGGAAGGAATCTACCCCAAAGTAAAGTTGGGTACGTTCACATCAATGTATCGTCGCTGTTAACCTTTTTGTTAGGCTTTACACTTGAAATATCTATTACTATTACAGTCTCTGTTAGTAATGCGGT] consensusID : consensus_1197#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [CTTCATTCACTACCAGAGGAATCGGTAGAAACCCTTCGCCCAGTTTTTTCCTCTGCTCTAAAGAAATAGGAAGAGTCTCTTGAATCAGAAGCAACAAAGAAATTTAAGTTGGGAGATAAAGCGCCTAATGCTTCTAAAAGAAAGAGAACCATCAATACGTGAAGCAGTATAGATTAGTTGAAGTTCTAATTTATTCTTTGTATGAGGTATCTGCATCTGCTACATAGATTTGTGATTCCAATGCTGTCTCCTTTAGGTGATTCTCGCCTATGATAATTTTGCAACAGGCTCAGCATTTAATCATGGATGTCCAAAACAAGAGGGATGGTTTGATGTGTCATGTAATCCATTTGCCGTACAATCCCCAAGCAGCTTTCCCCATCCCTGCAACCTGCTGCTTATTTTTGGTGCACGGTACAGTAGTTTTTTCCTGCCTTTACCCCAGGGAAGGAATTTTTCTTTCCTTCTGTAGTTATAATACATCCCCTGCTTTTCATGGCTAGGAAGGAATTTACCCCAAAGTAAAGTTGGGTACGTTCACATCAATGTATTGTCGCTGTTAACCTTTTTGTTAGGCTTTACCCTTGAAATATCTATTACTATTACAGTCTCTGTTAGTAATGCGGTTTGTTAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA761765 [CTTCATTCACTACCAGAGGAATCGGTAGAAACCCTTCGCCCAGTTTTTTCCTCTGCTCTAAAGAAATAGGAAGAGTCTCTTGAATCAGAAGCAACAAAGAAATTTAAGTTGGGAGATAAAGCGCCTAATGCTTCTAAAAGAAAGAGAACCATCAATACGTGAAGCAGTATAGATTAGTTGAAGTTCTAATTTATTCTTTGTATGAGGTATCTGCATCTGCTACATAGATTTGTGATTCCAATGCTGTCTCCTTTAGGTGATTCTCGCCTATGATAATTTTGCAACAGGCTCAGCATTTAATCATGGATGTCCAAAACAAGAGGGATGGTTTGATGTGTCATGTAATCCATTTGCCGTACAATCCCCAAGCAGCTTTCCCCATCCCTGCAACCTGCTGCTTATTTTTGGTGCACGGTACAGTAGTTTTTTCCTGCCTTTACCCCAGGGAAGGAATTTTTCTTTCCTTCTGTAGTTATAATACATCCCCTGCTTTTCATGGCTAGGAAGGAATTTACCCCAAAGTAAAGTTGGGTACGTTCACATCAATGTATTGTCGCTGTTAACCTTTTTGTTAGGCTTTACCCTTGAAATATCTATTACTATTACAGTCTCTGTTAGTAATGCGGTTTGTTAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1197#0 CTCCACGCCCTAATTCGCCGCCGCCGCTTACTCACCTCCTCGCCTGTCGCCTCTCGGTGC 60 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 GAGTTCTACTCACCGGCGCCGGCGACGGCGACGACCCTGGTTGGCGGTTGAATCGTCGTC 120 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 CTCGGCGTGTGATGGTGGTGGCCATGGCGACGAAGGAGGAGGAGGGTGGGCCGTCGAGCC 180 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 GCGTGCCTCACCTTCCGTGGATGCGGAACCCCGTCGACATCGACTCCTTCTCCGGCTGCC 240 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 CCGTCGCGCACCTTCCCCGTCTCGATCCCAGGTTGGTGAAGCCATTGCAGAGAATGGGGA 300 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 TAGAATCATTTTTTCCAGTTCAAGTAGCAGCATGGCTGGAAACTATTGGTCCTGGTGCTT 360 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 TTGAGAGGGATATCTGTATTAACTCCCCAACTGGATCTGGCAAGACTCTTGCTTATGCTT 420 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 TGCCTATCGTTCAAATGCTCGCTACTCGAAAAGTAAGGTGCTTGCGTGCTTTGGTTGTGC 480 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 TACCTACAAGGGATTTAGCATTGCAGGTTAAAGAGGTTTTTGATGCTATTGCTCCTGTTG 540 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 TGGGCTTGTCAGTAGGCTCAGCAGTTGGTCAATCATCAATAGCGGATGAAGTTTCAAATC 600 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 TTATTGAGAAGTCTAAACAAGGGCTTTTCCCAAGTCTTGATGAAGAATATATCCAAATGG 660 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 AACCACAGACTAAAGTTGATATATTGGTGGCAACTCCTGGAAGACTGATGGATCATATCA 720 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 GCATGACAAAAGGTTTCAGCCTGGAGCATCTTCAATACCTGGTTGTTGATGAGACGGACA 780 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 GGATGTTGAGAGAAGCTTATCAGTCTTGGTTGCCAACAGTTATCCAGCTTACTCGCTCGA 840 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 GTGATCAAAACCATTCCTGGTCAGACATGAACGGAGAAACTCTACTGCATCCATTGACTA 900 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 CCATTAGACGATCGGGTGTTGAGCGTGGTTTTAAAGGTAAATCCTTTCCAAGATTGGCGA 960 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 AGATAGTTTTGTCTGCCACACTGACTCAAGATCCTAGCAAGCTTTCTCAACTTGAGTTGC 1020 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 AACATCCCTTGCTGTTGAATAGTGGAAAGAAGCGCTACAGAATTCCAACAAAGCTTCAGT 1080 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 CCTACAAGCTGGTCTGTAAATCAAATTTAAAACCACTATCTCTGATTGTTCTTCTCCAAG 1140 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 AGCTGCGTGGGGAAAAATGTTTAGTTTTTACTTCATCTGTGGAATCCAGTCACAGACTGA 1200 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 GCACCTTGCTGGAATTTTTCGAAGACTTGCCCTTCAAATTTAGTGAATATTCACGTTTGC 1260 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 AACGTGAATCGACTCGGAGGAAGACACTGGATGCCTTCAAGGAAGGGAAGATAGATGTTC 1320 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 TGATTGGTACAGATAGAATGGCTCGAGGAATTCATATTGATGGCTTAAGATATGTTATCA 1380 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 ATTATGACATGCCACCGTATGTAAAAACATACATCCACCGAGCAGGTCGTACTGCTCGGG 1440 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 CGGGAGAGTCTGGTTCTTGCTTCACATTTTTAAGGAAACATGAGGTTAAGGCTTTTGACA 1500 consensus_1197#1 ------------------------------------------------------------ consensus_1197#0 AAATGCTCAAGAAGGCAGATAATTCTAGCTGCAGTCTTCATTCACTACCAGAGGAATCGG 1560 consensus_1197#1 -----------------------------------CTTCATTCACTACCAGAGGAATCGG 25 ************************* consensus_1197#0 TAGAAACCCTTCGCCCAGTTTTTTCCTCTGCTCTAAAGAAATTGGAAGAGTCTCTTGAAT 1620 consensus_1197#1 TAGAAACCCTTCGCCCAGTTTTTTCCTCTGCTCTAAAGAAATAGGAAGAGTCTCTTGAAT 85 ****************************************** ***************** consensus_1197#0 CAGAAGCAACAAAGAAATCTAAGTCGGGAGATAAAGCGCCTAATGCTTCTAAAAGAAAGA 1680 consensus_1197#1 CAGAAGCAACAAAGAAATTTAAGTTGGGAGATAAAGCGCCTAATGCTTCTAAAAGAAAGA 145 ****************** ***** *********************************** consensus_1197#0 GAACCATCAATACGTGAAGCAGTATAGATTAGTTGAAGTTCTAATTTATTCTTTGTATGA 1740 consensus_1197#1 GAACCATCAATACGTGAAGCAGTATAGATTAGTTGAAGTTCTAATTTATTCTTTGTATGA 205 ************************************************************ consensus_1197#0 TGTATCTGCATCTGCTACATAGATTTG------------------------GTGATTCTC 1776 consensus_1197#1 GGTATCTGCATCTGCTACATAGATTTGTGATTCCAATGCTGTCTCCTTTAGGTGATTCTC 265 ************************** ********* consensus_1197#0 GCCTATGATAATTCTGCAACAGGCTCAGCATTTAATCATGGATGTCCAAAACAAGAGGGA 1836 consensus_1197#1 GCCTATGATAATTTTGCAACAGGCTCAGCATTTAATCATGGATGTCCAAAACAAGAGGGA 325 ************* ********************************************** consensus_1197#0 TGGTTTGATGTGTCATGTAATCCATTTGCCGTGCAATCCCCAAGCAGCTTTCCCCATCCC 1896 consensus_1197#1 TGGTTTGATGTGTCATGTAATCCATTTGCCGTACAATCCCCAAGCAGCTTTCCCCATCCC 385 ******************************** *************************** consensus_1197#0 TGCAACCTGCTGCTTATTTTTGGTGCACGGTACAGTAGTTCTCTTCTGCTTTTACACCAG 1956 consensus_1197#1 TGCAACCTGCTGCTTATTTTTGGTGCACGGTACAGTAGTTTTTTCCTGCCTTTACCCCAG 445 **************************************** * * **** ***** **** consensus_1197#0 GGAAGGAATTCTTCTTTCCTTCTGTAGTTATAATACATCCACTGCTTTTCATGGCTAGGA 2016 consensus_1197#1 GGAAGGAATTTTTCTTTCCTTCTGTAGTTATAATACATCCCCTGCTTTTCATGGCTAGGA 505 ********** ***************************** ******************* consensus_1197#0 AGGAATCTACCCCAAAGTAAAGTTGGGTACGTTCACATCAATGTATCGTCGCTGTTAACC 2076 consensus_1197#1 AGGAATTTACCCCAAAGTAAAGTTGGGTACGTTCACATCAATGTATTGTCGCTGTTAACC 565 ****** *************************************** ************* consensus_1197#0 TTTTTGTTAGGCTTTACACTTGAAATATCTATTACTATTACAGTCTCTGTTAGTAATGCG 2136 consensus_1197#1 TTTTTGTTAGGCTTTACCCTTGAAATATCTATTACTATTACAGTCTCTGTTAGTAATGCG 625 ***************** ****************************************** consensus_1197#0 GT---------------------------- 2138 consensus_1197#1 GTTTGTTAAAAAAAAAAAAAAAAAAAAAAA 655 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||