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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11972#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1504 fasta sequence
[GCTTAGAGAGCAGACAACAAACTTTTGTCCTGATTCATCTAAACTCTTACCTGACTGCAATCAAGGCCAATTGTAATCCAATAATCTCTGATCTTGTTCTGGTTGCACGTTGAGATGATGGTGCCCTCTTCACGGAAAGTCCGTGTTTTCTGCTCTGATCCTGATGCCACTGACTCCTCTGATGAAGATGACCAGAATAAGAAGGAAAGGAGATTTTCAAGGGAAATACTAATTCCAATGGAAAACTCCAAGGCATCCAAACCTGTTAAGACCCTTGTTCAATGTGGCACAAAGACTGTAAAGGATTCCGAGAAGGAACCGACGAGCAAATACAGGGGTGTGCGCCGGCGGGCGTGGGGCAAATGGGCTGCAGAAATACGTGACCCTGTGCGAAAATCAAGGAAATGGATTGGCACATTTAACAGTGAGGAGGAGGCCGCTGCGGCATATCTTGCACAATCAAACCAGTTCCATGAAGAGTTGATGGCCTTGAAAATCCAATCTTCTGTATCAGAGCAGGAAGATTTGTCAAGCTCTGTTACTATATCCTGCGTGTCCTCATCTCAGTCATGTGACCAGAAGATTCAGGCAAAGCCACAAGAACACAAGAGAGTGTCAGTGGTGGTTAACCGTGAGACCGTTGAGCAGAAGTTTAAGGCACAGCCACAAGCTCAGAAGATTAAGGCACAGCCAGAAGTGCAGAAGAGAGTGTCAGTGAAGATTAGCCATGAGACTGAGGATGAGCACTTGCTGAACTTGCCGTCCACGCC-TAAAGGCAAA--GAGATTT-CGATGGG-CGCTGTT-CTTGGCAGGA-TAGAT-GAGATTCCTGT-GAGCAACTGTGTGGG-CCATATTGAT-GAATTT-CCACCT-GATGATTT-CACTAGGCTTGCAGATGCG-TTCCCAGTTAGTGATTTTATCGGCATGGCAGATGTGCCACTGGGCGATGATTACATTGGCCTTGCAGACATCAGCCACCTGCCGCTGCCTATCACAGATCTGAAGTTC-GACCT-CAATGCAGAACTCAACTGGGACGGGTTCGACTTTGCTTCATTGGAACAAGAACTCAACTGTCTTTGATGGCTTGAATCCTGTTCTATGTGAAAACCTCTTGTTGATTGAATTGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTCACATTGCTGGCAGGCCGAGTGTATGATCTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTGATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATATTGTTCTTGTGATTCTGAAGTTATGTACAAATGTAAATATAGGCCTGATAAAATCCAGTTATTGTAAATACCCTTACTAATTTTAGGCAATGAACAGCTAAGAATAGTTCATTGTTGAACAAAAATGATTAATT]
[+] EMBL AK100575 [GCTTAGAGAGCAGACAACAAACTTTTGTCCTGATTCATCTAAACTCTTACCTGACTGCAATCAAGGCCAATTGTAATCCAATAATCTCTGATCTTGTTCTGGTTGCACGTTGAGATGATGGTGCCCTCTTCACGGAAAGTCCGTGTTTTCTGCTCTGATCCTGATGCCACTGACTCCTCTGATGAAGATGACCAGAATAAGAAGGAAAGGAGATTTTCAAGGGAAATACTAATTCCAATGGAAAACTCCAAGGCATCCAAACCTGTTAAGACCCTTGTTCAATGTGGCACAAAGACTGTAAAGGATTCCGAGAAGGAACCGACGAGCAAATACAGGGGTGTGCGCCGGCGGGCGTGGGGCAAATGGGCTGCAGAAATACGTGACCCTGTGCGAAAATCAAGGAAATGGATTGGCACATTTAACAGTGAGGAGGAGGCCGCTGCGGCATATCTTGCACAATCAAACCAGTTCCATGAAGAGTTGATGGCCTTGAAAATCCAATCTTCTGTATCAGAGCAGGAAGATTTGTCAAGCTCTGTTACTATATCCTGCGTGTCCTCATCTCAGTCATGTGACCAGAAGATTCAGGCAAAGCCACAAGAACACAAGAGAGTGTCAGTGGTGGTTAACCGTGAGACCGTTGAGCAGAAGTTTAAGGCACAGCCACAAGCTCAGAAGATTAAGGCACAGCCAGAAGTGCAGAAGAGAGTGTCAGTGAAGATTAGCCATGAGACTGAGGATGAGCACTTGCTGAACTTGCCGTCCACGCC TAAAGGCAAA GAGATTT CGATGGG CGCTGTT CTTGGCAGGA TAGAT GAGATTCCTGT GAGCAACTGTGTGGG CCATATTGAT GAATTT CCACCT GATGATTT CACTAGGCTTGCAGATGCG TTCCCAGTTAGTGATTTTATCGGCATGGCAGATGTGCCACTGGGCGATGATTACATTGGCCTTGCAGACATCAGCCACCTGCCGCTGCCTATCACAGATCTGAAGTTC GACCT CAATGCAGAACTCAACTGGGACGGGTTCGACTTTGCTTCATTGGAACAAGAACTCAACTGTCTTTGATGGCTTGAATCCTGTTCTATGTGAAAACCTCTTGTTGATTGAATTGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTCACATTGCTGGCAGGCCGAGTGTATGATCTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACGGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTGATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATATTGTT ]
[+] EMBL C26495 [GCTTAGAGAGCAGACAACAAACTTTTGTCCTGATTCATCTAAACTCTTACCTGACTGCAATCAAGGCCAATTGTAATCCAATAATCTCTGATCTTGTTCTGGTTGCACGTTGAGATGATGGTGCCCTCTTCACGGAAAGTCCGTGTTTTCTGCTCTGATCCTGATGCCACTGACTCCTCTGATGAAGATGACCAGAATAAGAAGGAAAGGAGATTTTCAAGGGAAATACTAATTCCAATGGAAAACTCCAAGGCATCCAAACCTGTT AGGNCCTTG TCAA ]
[+] EMBL CB642065 [ AAGTCCGTGTTTTCTGCTCTGATCCTGATGCCACTGACTCCTCTGATGAAGATGACCAGAATAAGAAGGAAAGGAGATTTTCAAGGGAAATACTAATTCCAATGGAAAACTCCAAGGCATCCAAACCTGTTAAGACCCTTGTTCAATGTGGCACAAAGACTGTAAAGGATTCCGAGAAGGAACCGACGAGCAAATACAGGGGTGTGCGCCGGCGGGCGTGGGGCAAATGGGCTGCAGAAATACGTGACCCTGTGCGAAAATCAAGGAAATGGATTGGCACATTTAACAGTGAGGAGGAGGCCGCTGCGGCATATCTTGCACAATCAAACCAGTTCCATGAAGAGTTGATGGCCTTGAAAATCCAATCTTCTGTATCAGAGCAGGAAGATTTGTCAAGCTCTGTTACTATATCCTGCGTGTCCTCATCTCAGTCATGTGACCAGAAGATTCAGGCAAAGCCACAAGAACACAAGAGAGTGTCAGTGGTGGTTAACCGTGAGACCGTTGAGCAGAAGTTTAAGGCACAGCCACAAGCTCAGAAGATTAAGGCACAGCCAGAAGTGCAGAAGAGAGTGTCAGTGAAGATTAGCCATGAGACTGAGGATGAGCACTTGCTGAACTTGCCGTCCACGCC TAAAGGCAAA GAGATTT CGATGGG CGCTGTT CTTGGCAGGA TAGAT GAGATTCCTGT GAGCAACTGTGTGGG CCATATTGAT GAATTT CCACCT GATGATTT CACTANGCTTGCAGATGCG TTCCCAGTTAGTGATTTTATCGGCATGGCAGATGTGCCACTGGGCGATGATTACATTGGCCTTGCAGACATCAGCCACCTGCC ]
[+] EMBL AU056308 [ ccngcCCACCCCTTAAAGNCAAAAGGAGATTTCCGATGGGCCGCTGTTCCTTGNCAGGATTAGATGGAGATCCCTGTGGAGCAACTGTGTGGGCCCATATTGATGGAATTTCCCACCTGGATGATTTNCACTAGGCTTGCAGATGCGTTTCCCANTTAGTGATTTTANCGGCATGGCAGATGTCCCA TGGGCGATGATTACATTGGCCTTGCAGACATCAGCCACCTGCCGCTGCCTATCACAGATCTGAAGTTC GACCTNCAATGCAGAACTCAACTGGGACGGGTTCGACTTTGCTTCATTGGAACAAGAACTCAACTGTCTTTGATGGCTTGAATCCTGTTCTATGTGAAAACCTCTTGTTGATTGAATTGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTCACATTGCTGGCAGGCCGAGTGTATGATCTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTGATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATAaaaaaa ]
[-] EMBL CB642066 [ T GAGATTCCTGT GAGCAACTGTGTGGG CCATATTGAT GAATTT CCACCT GATGATTT CACTAGGCTTGCAGATGCG TTCCCAGTTAGTGATTTTATCGGCATGGCAGATGTGCCACTGGGCGATGATTACATTGGCCTTGCAGACATCAGCCACCTGCCGCTGCCTATCACAGATTTGAAGTTC GACCT CAATGCAGAACTCAACTGGGACGGGTTCGACTTTGCTTCATTGGAACAAGAACTCAACTGTCTTTGATGGCTTGAATCCTGTTTTATGTGAAAACCTCTTGTTGATTGAATTGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTCACATTGCTGGCAGGCCGAGTGTATGATTTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCCCCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTGATTTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATATTGTTCTTGTGATTCTGAAGTTATGTACAAATGTAAATATAGGCCTGATAAAATCCAGTTATTGTAAATACCCTTACTAATTTTAGGCAATGAACAGCTAAGAATAGTTCATTGTTGAACAAAAATGATTAATT]
[+] EMBL AU068404 [ CAG TAGTGA TTTA CGGCAT GCAGATGTNCCACTGGGCGATGATTACATTGGCCTTGCAGACATCAGCCACCTGCCGCTGCCTATCACAGATCTGAAGTTC GACCT CAATGCAGAACTCAACTGGGACGGGTTCGACTTTGCTTCATTGGAACAAGAACTCAACTGTCTTTGATGGCTTGAATCCTGTTCTATGTGAAAACCTCTTGTTGATTGAATTGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTCACATTGCTGGCAGGCCGAGTGTATGATCTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTGATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAAaaaaaaaa ]
[+] EMBL AU181401 [ TGATTACATTGGCCTTGCAGACATCAGCCACCTGCCGCTGCCTATCACAGATCTGAAGTTC GACCT CAATGCAGAACTCAACTGGGACGGGTTCGACTTTGCTTCATTGGAACAAGAACTCAACTGTCTTTGATGGCTTGAATCCTGTTCTATGTGAAAACCTCTTGTTGATTGAATTGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTCACATTGCTGGCAGGCCGAGTGTATGATCTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTGATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATATTGTTCTTGTGATaaaaaa ]
[-] EMBL OS2033A [ AGCCACCTGCCGCTGCCTATCACAGATCTGAAGTTCGGCCCT CAATGCAGAACTCAACTGGGACGGGTTCGACTTTGCTTCATTGGAACAAGAACTCAACTGTCTTTGATGGCTTGAATCCTGTTCTATGTGAAAACCTCTTGTTGATTGAATTGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTCACATTGCTGGCAGGCCGAGTGTATGATCTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTG ]
consensusID : consensus_11972#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[GNGAATCCTNCACCTAAGAAANGATTGGGGNTTTTGGGAANGGATNCGGNCANGNGGGCAAGNNGATTCACCGNGGTTCATGGGTGAANNGGNTCCAGTAGGGATTNTNGGCNGGGAGAGGGCATGGGGGGGAAANATGGCCTGGCANAANTTACCACCTGCCGTGCCTNTTAACAANATTGGAAGTTGGACCTTCATGCGGAATTCAATGGGNAGGGTTGGATTTGGTTTCATTGGGAACAGGAATTCAACTGTCTTGGATGGGCTGGAATCCTGTTCTATGGGGAAAACTTCTTGTTGATGGAATGGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTTCAACATTGCTGGCAGGCGGAGTGTATGATCTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTGATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATATTGTTCTTGTGATTCTGAAGTTATGTACAAATGTAAATATAGGCCTGATAAAATCCAGTTATTGTAAAT]
[-] EMBL BE229113 [GNGAATCCTNCACCTAAGAAANGATTGGGGNTTTTGGGAANGGATNCGGNCANGNGGGCAAGNNGATTCACCGNGGTTCATGGGTGAANNGGNTCCAGTAGGGATTNTNGGCNGGGAGAGGGCATGGGGGGGAAANATGGCCTGGCANAANTTACCACCTGCCGTGCCTNTTAACAANATTGGAAGTTGGACCTTCATGCGGAATTCAATGGGNAGGGTTGGATTTGGTTTCATTGGGAACAGGAATTCAACTGTCTTGGATGGGCTGGAATCCTGTTCTATGGGGAAAACTTCTTGTTGATGGAATGGAGTGCAGGAGGTAGATTCAGGTATCCATCTTTTCAACATTGCTGGCAGGCGGAGTGTATGATCTGGAGATTTTCATCTCCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATTTATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTGATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATATTGTTCTTGTGATTCTGAAGTTATGTACAAATGTAAATATAGGCCTGATAAAATCCAGTTATTGTAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11972#0 GCTTAGAGAGCAGACAACAAACTTTTGTCCTGATTCATCTAAACTCTTACCTGACTGCAA 60
consensus_11972#1 ------------------------------------------------------------
consensus_11972#0 TCAAGGCCAATTGTAATCCAATAATCTCTGATCTTGTTCTGGTTGCACGTTGAGATGATG 120
consensus_11972#1 ------------------------------------------------------------
consensus_11972#0 GTGCCCTCTTCACGGAAAGTCCGTGTTTTCTGCTCTGATCCTGATGCCACTGACTCCTCT 180
consensus_11972#1 ------------------------------------------------------------
consensus_11972#0 GATGAAGATGACCAGAATAAGAAGGAAAGGAGATTTTCAAGGGAAATACTAATTCCAATG 240
consensus_11972#1 ------------------------------------------------------------
consensus_11972#0 GAAAACTCCAAGGCATCCAAACCTGTTAAGACCCTTGTTCAATGTGGCACAAAGACTGTA 300
consensus_11972#1 ------------------------------------------------------------
consensus_11972#0 AAGGATTCCGAGAAGGAACCGACGAGCAAATACAGGGGTGTGCGCCGGCGGGCGTGGGGC 360
consensus_11972#1 ------------------------------------------------------------
consensus_11972#0 AAATGGGCTGCAGAAATACGTGACCCTGTGCGAAAATCAAGGAAATGGATTGGCACATTT 420
consensus_11972#1 ------------------------------------------------------------
consensus_11972#0 AACAGTGAGGAGGAGGCCGCTGCGGCATATCTTGCACAATCAAACCAGTTCCATGAAGAG 480
consensus_11972#1 ------------------------------------------------------------
consensus_11972#0 TTGATGGCCTTGAAAATCCAATCTTCTGTATCAGAGCAGGAAGATTTGTCAAGCTCTGTT 540
consensus_11972#1 ------------------------------------------------------------
consensus_11972#0 ACTATATCCTGCGTGTCCTCATCTCAGTCATGTGACCAGAAGATTCAGGCAAAGCCACAA 600
consensus_11972#1 ------------------------------------------------------------
consensus_11972#0 GAACACAAGAGAGTGTCAGTGGTGGTTAACCGTGAGACCGTTGAGCAGAAGTTTAAGGCA 660
consensus_11972#1 ------------------------------------------------------------
consensus_11972#0 CAGCCACAAGCTCAGAAGATTAAGGCACAGCCAGAAGTGCAGAAGAGAGTGTCAGTGAAG 720
consensus_11972#1 ------------------------------------------------------------
consensus_11972#0 ATTAGCCATGAGACTGAGGATGAGCACTTGCTGAACTTGCCGTCCACGCCTAAAGGCAAA 780
consensus_11972#1 ------------------------------------------------------------
consensus_11972#0 GAGATTTCGATGGGCGCTGTTCTTGGCAGGATAGATGAGATTCCTGTGAGCAACTGTGTG 840
consensus_11972#1 ---------GNGAATCCTNCACCTAA-GAAANGATTGGGGNTTTTGGGAANGGATNC--- 47
* ** * * * ** * * ** ** *
consensus_11972#0 GGCCATATTGATGAATTTCCACCTGATGATTTCACTAGGCTTGCAGATGCGTTCCCAGTT 900
consensus_11972#1 GGNCANGNGGGCAAGNNGATTCACCGNGGTTC--ATGGGT-----GAANNGGNTCCAGT- 99
** ** * * * * ** * ** ** * *****
consensus_11972#0 AGTGATTTTATCGGCATGGCAGATGTGCCACTGGGCGATGATTACATTGGCCTTGCAGAC 960
consensus_11972#1 AGGGATTNTN--GGCNGGGAGAGGGCA----TGGGGGGGAAANA---TGGCCTGGCANAA 150
** **** * *** ** * **** * * * ****** *** *
consensus_11972#0 ATCAGCCACCTGCCGCTGCCTATCAC--AGATCTGAAGTTCGACCTCAATGCAGAACTCA 1018
consensus_11972#1 NTTA-CCACCTGCCG-TGCCTNTTAACAANATTGGAAGTTGGACCTTCATGCGGAATTCA 208
* * ********** ***** * * * ** ****** ***** **** *** ***
consensus_11972#0 ACTGGGACGGGTTCGACTTTGCTTCATTGG-AACAAGAACTCAACTGTCTTTGATGG-CT 1076
consensus_11972#1 A-TGGGNAGGGTTGGATTTGGTTTCATTGGGAACAGGAATTCAACTGTCTTGGATGGGCT 267
* **** ***** ** ** * ******** **** *** *********** ***** **
consensus_11972#0 TGAATCCTGTTCTATGTG-AAAACCTCTTGTTGATTGAATTGAGTGCAGGAGGTAGATTC 1135
consensus_11972#1 GGAATCCTGTTCTATGGGGAAAACTTCTTGTTGATGGAATGGAGTGCAGGAGGTAGATTC 327
*************** * ***** ********** **** *******************
consensus_11972#0 AGGTATCCATCTTTC--ACATTGCTGGCAGGCCGAGTGTATGATCTGGAGATTTTCATCT 1193
consensus_11972#1 AGGTATCCATCTTTTCAACATTGCTGGCAGGCGGAGTGTATGATCTGGAGATTTTCATCT 387
************** *************** ***************************
consensus_11972#0 CCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATT 1253
consensus_11972#1 CCAATTTTGCCGGAAAATTGTACAGTCCCCCTACAGCAAACAAATGAGTACCGCAGTATT 447
************************************************************
consensus_11972#0 TATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTG 1313
consensus_11972#1 TATGTATATGTTCACCAATCTCAAAAATGTTAATGAGATTGTGGTGACAGACCGTCCTTG 507
************************************************************
consensus_11972#0 ATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATATTG 1373
consensus_11972#1 ATCTCAGTTTGGTTGTGTATTTGTTGGACGCCATTATTATATTTGTTAATTTTGATATTG 567
************************************************************
consensus_11972#0 TTCTTGTGATTCTGAAGTTATGTACAAATGTAAATATAGGCCTGATAAAATCCAGTTATT 1433
consensus_11972#1 TTCTTGTGATTCTGAAGTTATGTACAAATGTAAATATAGGCCTGATAAAATCCAGTTATT 627
************************************************************
consensus_11972#0 GTAAATACCCTTACTAATTTTAGGCAATGAACAGCTAAGAATAGTTCATTGTTGAACAAA 1493
consensus_11972#1 GTAAAT------------------------------------------------------ 633
******
consensus_11972#0 AATGATTAATT 1504
consensus_11972#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||