These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11984#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 3036 fasta sequence [TTTCTCCTTTCTCCCCTCGAGTCTGATCCTCCCACTACCAACGTCCACCGGCACCGCAACTTGCTGTCCTCTCCTGCCGGCTGGTCCAGCTCCATCTCTCTTCTTGCTCTGCCTCCCCCTTCAATTTAATTGATTCCTCCATCCAGATTTCGAGATCGAGATGAAGGCAGTGATGATGCACCACCATCACGCGGCACGCCCTGCGCGCTGTCCAAGGCCTATCTCTTCCTCCTCCTCCTCAGCCCTGTTGGGTAGCAGACCAACCAGAGTCTCCTCCCCATCAAACCTGCCAAAGTTGCTCATAAACCGGCGACACATCACCCCTCTTGCCACCAATGCTCCCCATGCTGTTGCTGAAGATGATGGCGCCATCTCTTTTGCTAATGCAACGCCAACGGAGCCTCCCATTGACTTGCGTCCCGGGGGTGTCAGAAATGAGCTAATTCTTCTAGCTCTACCAGCAGTTCTTGGCCAAGCTATTGATCCATTGGCGCAATTGATGGAGACTGCATATATTGGTAGATTAGGTATTATGGCGCTTGCCCTTCATAAAGTAGCTCTTGGGAGTGCTGAATTATAGCCATCCTTACTGCATGAAAGCAAGCTGTCCCTTCTTTTGCCATTCATCCTTCTTTTTCATATATTCTGAAGGGGCTCTGGAGCTAGCATCAGCTGGTATTGGTGTGTCGGTTTTTAATATCGTGTCTAAGATTTTCAACATTCCACTGTTGAGCATTGCAACCTCATTTGTGGCAGAAGACATTTCCAAGAATGCTAGCAAGCATTCAAGTTCAGGCAAATTGGAGCTGTCATCTGTATCTTCTGCATTGGTCTTAGCTGCTGGAATCGGTACAATTGAAGCATTGGCATTGTTCCTAGGATCAGGATTGTTTCTTAAACTAATGGGCGTGTCACCTGCCTCACCAATGCATAAACCTGCAAAACTTTTCCTTTCATTGAGAGCTTTGGGAGCACCTGCAAATGTGATTATGTTAGCAGTTCAGGGAATATTTCGTGGATTCAAGGATACTAAGACTCCTGTATTTTTTATAGGTTTGGGAAATCTTTCAGCTGTAGTGCTTCTTCCTTTACTTATTTACGTCTTTCGGCTTGGCATAACTGGAGCTGCAATTTCTACAGTTGCATCACAGTACATTATTACAATTTTGCTTCTCCAGTCTCTAAGTAAAAGAGCTGTTCTACTTCCTCCAAGGCTGGACCAGTTAGAGTTTAGCGGATATCTAAAATCTGGTGTCTTTTTCGTTCTTCTATCTCCCCCTCTCTCATTATATTCAATTGTTGTGCATGCTAAATCAGAGTTCTTACACTTTCATTGATCTCAGTGTCCGTTCATTTTGTTCATTCTACAATGTGCGGTTAACTGAAGTTCAGATTTTCTCTCCCAGGGGGCTTTGAGTTCTTTGGGTTAATTTGTCAAAATTTCCAATTCTGGATCCACTATGCATTTAACAATGATACCTTTATCGATAACAAGTTAATTGTAAAGTTTGGTTTTTGAAATAACTTTATATGCAAGAAAAAGGAAAGACTATCGTAGAGTAGATGGTGTAGGTACGGTTACTGCTAGTATATTTTACAGATATGTTGATCAGCTTGTCATTGATAGAGCTTTCATTCATGGGCCATGCCCATTCTGTCCACTAATGAATGGGCTGTTCAGGGAACTTCTATTCTCCATATTGTTTCGTGGTACCATTTATATGTAGTAAAATGTGCTCAATTCTAGGATTTGCAAATATTTGCTGTCATATTATTGGAAAGATAATGCATGTCTATGATATGCATCCTGAGAACCTCCATGTTATAATTTCATACTTCTTATCTTGTTTTTCCTTTTATTGCACTTACCACCATCTATAATTCCATCATCTGTTTTTGAAATGCTTAGGTGGCATGCTGTTAGGAAGAACCCTCTCGATTTTATTAACGATGACCATAGGGACATCAATGGCTGCTCGACAAGGCCCAACAGCTATGGCAGCTCATCAGATATGCTTACAAGTATGGCTTGCGGTATCTTTGCTTGCAGATGCTTTAGCTGTTTCTGCCCAGGCAATGATAGCAAGCTCCTATGCAATATTGGACTACAAGAGGGTCCAGAAGATAGCAATGTTTGCTTTGCAGGTCATGTGTCATTTCTCTGTTTTCTATTGTGAAGCTTTGTTTTTCATGTATTCATAGATGCAATCGCCCTTTCTTGTTAACATAGAAAAATGGAGATTTTCTTGCAGATAGGAGTAGTCAGTGGATTAGCTTTATCCGCTGGCCTGTATACCTCATTCAGTAATATAGCAAGATTATTTACCAGTGACCCTGTGGTCCTAATGGTTGTCAAATCTTGTTCATTGTTTGTATGTGCCAGTCAA-CCAATTAATGCTCTGGCATTCATATTTGATGGTCTGCATTATGGTGTCTCAGATTTTGATTATGTCGCTCAAGCTACGATTGCTGTTGGGATAATGTCATCATTAGTTTTGTTATATGCTCCATCTGTTTTTGGACTTGCTGGAGTTTGGGCTGGTTTGACAACACTTATGGGATTGCGCATGGCTTCGGGCATTCTCAGGCTTCTATGGAAATCAGGACCTTGGTCATTTTTGCATGAGGAACCCAAAACAGAGCTAGCTGGTTGAAGATGGAGCGGCAACTAAGCAGTCAATACTACGGATTAAATGAACGAGCGGGTGATTCTGTAGGTATTTATGTTCAAGTCGGTCTGCTAGGAGATGCCATTTTTACTTGCTACCAACATTGTTCAATTGCTAGTGTTATTACTATGTGTAGCCGTTTTATTTATTCTAAAGGCTCCCTTGTTTCTTGTGGTGGTTTTCGTTTACTGTGTAAGCCAGTTTGCTGCTGCGTAAACAGCTTGATAAGTTTAGAAGGATAGAGAATTTGCCTTTCTTTAACCTGAGACCACTTCGAATTATTTTTGGAGCAATGTATACTAATACTGTATTATTCAGTTCAAAGGGGCCCTACGTAGCATTGTCCTAAAAAAAAAAAAAAAAAGGA] [+] EMBL AK066423 [TTTCTCCTTTCTCCCCTCGAGTCTGATCCTCCCACTACCAACGTCCACCGGCACCGCAACTTGCTGTCCTCTCCTGCCGGCTGGTCCAGCTCCATCTCTCTTCTTGCTCTGCCTCCCCCTTCAATTTAATTGATTCCTCCATCCAGATTTCGAGATCGAGATGAAGGCAGTGATGATGCACCACCATCACGCGGCACGCCCTGCGCGCTGTCCAAGGCCTATCTCTTCCTCCTCCTCCTCAGCCCTGTTGGGTAGCAGACCAACCAGAGTCTCCTCCCCATCAAACCTGCCAAAGTTGCTCATAAACCGGCGACACATCACCCCTCTTGCCACCAATGCTCCCCATGCTGTTGCTGAAGATGATGGCGCCATCTCTTTTGCTAATGCAACGCCAACGGAGCCTCCCATTGACTTGCGTCCCGGGGGTGTCAGAAATGAGCTAATTCTTCTAGCTCTACCAGCAGTTCTTGGCCAAGCTATTGATCCATTGGCGCAATTGATGGAGACTGCATATATTGGTAGATTAGGTATTATGGCGCTTGCCCTTCATAAAGTAGCTCTTGGGAGTGCTGAATTATAGCCATCCTTACTGCATGAAAGCAAGCTGTCCCTTCTTTTGCCATTCATCCTTCTTTTTCATATATTCTGAAGGGGCTCTGGAGCTAGCATCAGCTGGTATTGGTGTGTCGGTTTTTAATATCGTGTCTAAGATTTTCAACATTCCACTGTTGAGCATTGCAACCTCATTTGTGGCAGAAGACATTTCCAAGAATGCTAGCAAGCATTCAAGTTCAGGCAAATTGGAGCTGTCATCTGTATCTTCTGCATTGGTCTTAGCTGCTGGAATCGGTACAATTGAAGCATTGGCATTGTTCCTAGGATCAGGATTGTTTCTTAAACTAATGGGCGTGTCACCTGCCTCACCAATGCATAAACCTGCAAAACTTTTCCTTTCATTGAGAGCTTTGGGAGCACCTGCAAATGTGATTATGTTAGCAGTTCAGGGAATATTTCGTGGATTCAAGGATACTAAGACTCCTGTATTTTTTATAGGTTTGGGAAATCTTTCAGCTGTAGTGCTTCTTCCTTTACTTATTTACGTCTTTCGGCTTGGCATAACTGGAGCTGCAATTTCTACAGTTGCATCACAGTACATTATTACAATTTTGCTTCTCCAGTCTCTAAGTAAAAGAGCTGTTCTACTTCCTCCAAGGCTGGACCAGTTAGAGTTTAGCGGATATCTAAAATCTGGTGTCTTTTTCGTTCTTCTATCTCCCCCTCTCTCATTATATTCAATTGTTGTGCATGCTAAATCAGAGTTCTTACACTTTCATTGATCTCAGTGTCCGTTCATTTTGTTCATTCTACAATGTGCGGTTAACTGAAGTTCAGATTTTCTCTCCCAGGGGGCTTTGAGTTCTTTGGGTTAATTTGTCAAAATTTCCAATTCTGGATCCACTATGCATTTAACAATGATACCTTTATCGATAACAAGTTAATTGTAAAGTTTGGTTTTTGAAATAACTTTATATGCAAGAAAAAGGAAAGACTATCGTAGAGTAGATGGTGTAGGTACGGTTACTGCTAGTATATTTTACAGATATGTTGATCAGCTTGTCATTGATAGAGCTTTCATTCATGGGCCATGCCCATTCTGTCCACTAATGAATGGGCTGTTCAGGGAACTTCTATTCTCCATATTGTTTCGTGGTACCATTTATATGTAGTAAAATGTGCTCAATTCTAGGATTTGCAAATATTTGCTGTCATATTATTGGAAAGATAATGCATGTCTATGATATGCATCCTGAGAACCTCCATGTTATAATTTCATACTTCTTATCTTGTTTTTCCTTTTATTGCACTTACCACCATCTATAATTCCATCATCTGTTTTTGAAATGCTTAGGTGGCATGCTGTTAGGAAGAACCCTCTCGATTTTATTAACGATGACCATAGGGACATCAATGGCTGCTCGACAAGGCCCAACAGCTATGGCAGCTCATCAGATATGCTTACAAGTATGGCTTGCGGTATCTTTGCTTGCAGATGCTTTAGCTGTTTCTGCCCAGGCAATGATAGCAAGCTCCTATGCAATATTGGACTACAAGAGGGTCCAGAAGATAGCAATGTTTGCTTTGCAGGTCATGTGTCATTTCTCTGTTTTCTATTGTGAAGCTTTGTTTTTCATGTATTCATAGATGCAATCGCCCTTTCTTGTTAACATAGAAAAATGGAGATTTTCTTGCAGATAGGAGTAGTCAGTGGATTAGCTTTATCCGCTGGCCTGTATACCTCATTCAGTAATATAGCAAGATTATTTACCAGTGACCCTGTGGTCCTAATGGTTGTCAAATCTTGTTCATTGTTTGTATGTGCCAGTCAA CCAATTAATGCTCTGGCATTCATATTTGATGGTCTGCATTATGGTGTCTCAGATTTTGATTATGTCGCTCAAGCTACGATTGCTGTTGGGATAATGTCATCATTAGTTTTGTTATATGCTCCATCTGTTTTTGGACTTGCTGGAGTTTGGGCTGGTTTGACAACACTTATGGGATTGCGCATGGCTTCGGGCATTCTCAGGCTTCTATGGAAATCAGGACCTTGGTCATTTTTGCATGAGGAACCCAAAACAGAGCTAGCTGGTTGAAGATGGAGCGGCAACTAAGCAGTCAATACTACGGATTAAATGAACGAGCGGGTGATTCTGTAGGTATTTATGTTCAAGTCGGTCTGCTAGGAGATGCCATTTTTACTTGCTACCAACATTGTTCAATTGCTAGTGTTATTACTATGTGTAGCCGTTTTATTTATTCTAAAGGCTCCCTTGTTTCTTGTGGTGGTTTTCGTTTACTGTGTAAGCCAGTTTGCTGCTGCGTAAACAGCTTGATAAGTTTAGAAGGATAGAGAATTTGCCTTTCTTTAACCTGAGACCACTTCGAATTATTTTTGGAGCAATGTATACTAATACTGTAT ] [+] EMBL CF311712 [ TGTT ATTCTACAATGTGCGGTTAACTGAAGTTCAGATTTTCTCTCCCAGGGGGCTTTGAGTTCTTTGGGTTAATTTGTCAAAATTTCCAATTCTGGATCCACTATGCATTTAACAATGATACCTTTATCGATAACAAGTTAATTGTAAAGTTTGGTTTTTGAAATAACTTTATATGCAAGAAAAAGGAAAGACTATCGTAGAGTAGATGGTGTAGGTACGGTTACTGCTAGTATATTTTACAGATATGTTGATCAGCTTGTCATTGATAGAGCTTTCATTCATGGGCCATGCCCATTCTGTCCACTAATGAATGGGCTGTTCAGGGAACTTCTATTCTCCATATTGTTTCGTGGTACCATTTATATGTAGTAAAATGTGCTCAATTCTAGGATTTGCAAATATTTGCTGTCATATTATTGGAAAGATAATGCATGTCTATGATATGCATCCTGAGAACCTCCATGTTATAATTTCATACTTCTTATCTTGTTTTTCCTTTTATTGCACTTACCAC ] [+] EMBL CB671272 [ AATATTTGCTGTCATATTATTGGAAAGATAATGCATGTCTATGATATGCATCCTGAGAACCTCCATGTTATAATTTCATACTTCTTATCTTGTTTTTCCTTTTATTGCACTTACCACCATCTATAATTCCATCATCTGTTTTTGAAATGCTTAGGTGGCATGCTGTTAGGAAGAACCCTCTCGATTTTATTAACGATGACCATAGGGACATCAATGGCTGCTCGACAAGGCCCAACAGCTATGGCAGCTCATCAGATATGCTTACAAGTATGGCTTGCGGTATCTTTGCTTGCAGATGCTTTAGCTGTTTCTGCCCAGGCAATGATAGCAAGCTCCTATGCAATATTGGACTACAAGAGGGTCCAGAAGATAGCAATGTTTGCTTTGCAGGTCATGTGTCATTTCTCTGTTTTCTATTGTGAAGCTTTGTTTTTCATGTATTCATAGATGCAATCGCCCTTTCTTGTTAACATAGAAAAATGGAGATTTTCTTGCAGATAGGAGTAGTCAGTGGATTAGCTTTATCCGCTGGCCTGTATACCTCATTCAGTAATATAGCAAGATTATTTACCAGTGACCCTGTGGTCCTAATGGTTGTCAAATCTTGTTCATTGTTTGTATGTGCCAGTCAA CCAATTAATGCTCTGGCATTCATATTTGATGGTCTGCATTATGGTGTCTCAGATTTTGATTATGTCGCTCAAGCTACGATTGCTGTTGGGATAATGTCATCATTAGTTTTGTTATATGCTCCATCTGTTTTTGGACTTGCTGGAGTGTG ] [-] EMBL CB684732 [ TAGGAGTAGTCAGTGGATTAGCTTTATCCGCTGGCCTGTATACCTCATTCAGTAATATAGCAAGATTATTTACCAGTGACCCTGTGGTCCTAATGGTTGTCAAATCTTGTTCATTGTTTGTATGTGCCAGTCAA CCAATTAATGCTCTGGCATTCATATTTGATGGTCTGCATTATGGTGTCTCAGATTTTGATTATGTCGCTCAAGCTACGATTGCTGTTGGGATAATGTCATCATTAGTTTTGTTATATGCTCCATCTGTTTTTGGACTTGCTGGAGTTTGGGCTGGTTTGACAACACTTATGGGATTGCGCATGGCTTCGGGCATTCTCAGGCTTTTATGGAAATCAGGACCTTGGTCATTTTTGCATGAGGAACCCAAAACAGAGCTAGCTGGTTGAAGATGGAGCGGCAACTAAGCAGTCAATACTACGGATTAAATGAACGAGCGGGTGATTCTGTAGGTATTTATGTTCAAGTCGGTCTGCTAGGAGATGCCATTTTTACTTGCTACCAACATTGTTCAATTGCTAGTGTTATTACTATGTGTAGCCGTTTTATTTATTTTAAAGGCTCCCTTGTTTCTTGTGGTGGTTTTCGTTTACTGTGTAAGCCAGTTTGCTGCTGCGTAAACAGCTTGATAAGTTTAGAAGGATAGAGAATTTGCCTTTCTTTAACCTGAGACCACTTCGAATTATTTTTGGAGCAATGTATACTAATACTGTATTATTCAGTTCAAAGGGGCCCTACGTAGCATTGTCCTAAAAAAAAAAAAAAAAAGGA] [-] EMBL CF328320 [ AAATCTTGTTCATTGTTTGTATGTGCCAGTCAACCCAATTAATGCTCTGGCATTCATATTTGATGGTCTGCATTATGGTGTCTCAGATTTTGATTATGTCGCTCAAGCTACGATTGCTGTTGGGATAATGTCATCATTAGTTTTGTTATATGCTCCATCTGTTTTTGGACTTGCTGGAGTTTGGGCTGGTTTGACAACACTTATGGGATTGCGCATGGCTTCGGGCATTCTCAGGCTTCTATGGAAATCAGGACCTTGGTCATTTTTGCATGAGGAACCCAAAACAGAGCTAGCTGGTTGAAGATGGAGCGGCAACTAAGCAGTCAATACTACGGATTAAATGAACGAGCGGGTGATTCTGTAGGTATTTATGTTCAAGTCGGTCTGCTAGGAGATGCCATTTTTACTTGCTACCAACATTGTTCAATTGCTAGTGTTATTACTATGTGTAGCCGTTTTATTTATTCTAAAGGCTCCCTTGTTTCTTGTGGTGGTTTTCGTTTACTGTGTAAGCCAGTTTGCTGCTGCGTAAACAGCTTGATAAGTTTAGAAGGATAGAGAATTTGCCTTTCTTTAACCTGAGACCACTTCGAATTATTTTTGGAGCAATGTATACTAATACTGTATTATTCAGTTCAAAaaaaa ] consensusID : consensus_11984#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1777 fasta sequence [AGATGACCGTAGTGATGATGCACCACCATCACGCGGCACGCCCTGCGCGCTGTCCAAGGCCTATCTCTTCCTCCTCCTCCTCAGCCCTGTTGGGTAGCAGACCAACCAGAGTCTCCTCCCCATCAAACCTGCCAAAGTTGCTCATAAACCGGCGACACATCACCCCTCTTGCCACCAATGCTCCCCATGCTGTTGCTGAAGATGATGGCGCCATCTCTTTTGCTAATGCAACGCCAACGGAGCCTCCCATGGGCTCTGGAGCTAGCATCAGCTGGTATTGGTGTGTCGGTTTTTAATATCGTGTCTAAGATTTTCAACATTCCACTGTTGAGCATTGCAACCTCATTTGTGGCAGAAGACATTTCCAAGAATGCTAGCAAGCATTCAAGTTCAGGCAAATTGGAGCTGTCATCTGTATCTTCTGCATTGGTCTTAGCTGCTGGAATCGGTACAATTGAAGCATTGGCATTGTTCCTAGGATCAGGATTGTTTCTTAAACTAATGGGCGTGTCACCTGCCTCACCAATGCATAAACCTGCAAAACTTTTCCTTTCATTGAGAGCTTTGGGAGCACCTGCAAATGTGATT-ATGTTAG-CAG-TTCAG-GGAATATTTCG-TGGATTCAAGGATACTAAGACTCCTGTATTTTTTATAGGTTTGGGAAATCTTTCAGCTGTAGTGCTTCTTCCTTTACTTATTTACGTCTTTCGGCTTGGCATAACTGGAGCTGCAATTTCTACAGTTGCATCACAGTACATTATTACAATTTTGCTTCTCCAGTCTCTAAGTAAAAGAGCTGTTCTACTTCCTCCAAGGCTGGACCAGTTAGAGTTTAGCGGATATCTAAAATCTGGTGGCATGCTGTTAGGAAGAACCCTCTCGATTTTATTAACGATGACCATAGGGACATCAATGGCTGCTCGACAAGGCCCAACAGCTATGGCAGCTCATCAGATATGCTTACAAGTATGGCTTGCGGTATCTTTGCTTGCAGATGCTTTAGCTGTTTCTGCCCAGGCAATGATAGCAAGCTCCTATGCAATATTGGACTACAAGAGGGTCCAGAAGATAGCAATGTTTGCTTTGCAGATAGGAGTAGTCAGTGGATTAGCTTTATCCGCTGGCCTGTATACCTCATTCAGTAATATAGCAAGATTATTTACCAGTGACCCTGTGGTCCTAATGGTTGTCAAATCTTGTTCATTGTTTGTATGTGCCAGTCAACCAATTAATGCTCTGGCATTCATATTTGATGGTCTGCATTATGGTGTCTCAGATTTTGATTATGTCGCTCAAGCTACGATTGCTGTTGGGATAATGTCATCATTAGTTTTGTTATATGCTCCATCTGTTTTTGGACTTGCTGGAGTTTGGGCTGGTTTGACAACACTTATGGGATTGCGCATGGCTTCGGGCATTCTCAGGCTTTTATGGAAATCAGGACCTTGGTCATTTTTGCATGAGGAACCCAAAACAGAGCTAGCTGGTTGAAGATGGAGCGGCAACTAAGCAGTCAATACTACGGATTAAATGAACGAGCGGGTGATTCTGTAGGTATTTATGTTCAAGTCGGTCTGCTAGGAGATGCCATTTTTACTTGCTACCAACATTGTTCAATTGCTAGTGTTATTACTATGTGTAGCCGTTTTATTTATTCTAAAGGCTCCCTTGTTTCTTGTGGTGGTTTTCGTTTACTGTGTAAGCCAGTTTGCTGCTGCGTAAACAGCTTGATAAGTTTAGAAGGATAGAGAATTTGCCTTTCTTTAAAAAAAAAAAAGGA] [+] EMBL CB674461 [AGATGACCGTAGTGATGATGCACCACCATCACGCGGCACGCCCTGCGCGCTGTCCAAGGCCTATCTCTTCCTCCTCCTCCTCAGCCCTGTTGGGTAGCAGACCAACCAGAGTCTCCTCCCCATCAAACCTGCCAAAGTTGCTCATAAACCGGCGACACATCACCCCTCTTGCCACCAATGCTCCCCATGCTGTTGCTGAAGATGATGGCGCCATCTCTTTTGCTAATGCAACGCCAACGGAGCCTCCCATGGGCTCTGGAGCTAGCATCAGCTGGTATTGGTGTGTCGGTTTTTAATATCGTGTCTAAGATTTTCAACATTCCACTGTTGAGCATTGCAACCTCATTTGTGGCAGAAGACATTTCCAAGAATGCTAGCAAGCATTCAAGTTCAGGCAAATTGGAGCTGTCATCTGTATCTTCTGCATTGGTCTTAGCTGCTGGAATCGGTACAATTGAAGCATTGGCATTGTTCCTAGGATCAGGATTGTTTCTTAAACTAATGGGCGTGTCACCTGCCTCACCAATGCATAAACCTGCAAAACTTTTCCTTTCATTGAGAGCTTTGGGAGCACCTGCAAATGTGATT ATGTTAG CAG TTCAG GGAATATTTCG TGGATTCAAGGATACTAAGACTCCTGTATTTTTTATAGGTTTGGGAAATCTTTCAGCTGTAGTGCTTCTTCCTTTACTTATTTACGTCTTTCGGCTTGGCATAACTGGAGCTGCAATTTCT ] [+] EMBL CB684731 [ GATTCATGTTAGACAGATTCAGTGGAATATTTCGATGGATTCAAGGATACTAAGACTCCTGTATTTTTTATAGGTTTGGGAAATCTTTCAGCTGTAGTGCTTCTTCCTTTACTTATTTACGTCTTTCGGCTTGGCATAACTGGAGCTGCAATTTCTACAGTTGCATCACAGTACATTATTACAATTTTGCTTCTCCAGTCTCTAAGTAAAAGAGCTGTTCTACTTCCTCCAAGGCTGGACCAGTTAGAGTTTAGCGGATATCTAAAATCTGGTGGCATGCTGTTAGGAAGAACCCTCTCGATTTTATTAACGATGACCATAGGGACATCAATGGCTGCTCGACAAGGCCCAACAGCTATGGCAGCTCATCAGATATGCTTACAAGTATGGCTTGCGGTATCTTTGCTTGCAGATGCTTTAGCTGTTTCTGCCCAGGCAATGATAGCAAGCTCCTATGCAATATTGGACTACAAGAGGGTCCAGAAGATAGCAATGTTTGCTTTGCAGATAGGAGTAGTCAGTGGATTAGCTTTATCCGCTGGCCTGTATACCTCATTCAGTAATATAGCAAGATTATTTACCAGTGACCCTGTGGTCCTAATGGTTGTCAAATCTTGTTCATTGTTTGTATGTGCCAGTCAACCAATTAATGCTCTGGCATTCATATTTGATGGTCTGCATTATGGTGTCTCAGATTTTGATTATGTCGCTCAAGCTACGATTGCTGTTGGGATAATGTCATCATTAGTTTTGTTATATGCTCCATCTGTTTTTGGACTTGCTGGAGTTTGGGCTGGTTT ] [-] EMBL CB674462 [ TTACAAGTATGGCTTGCGGTATCTTTGCTTGCAGATGCTTTAGCTGTTTCTGCCCAGGCAATGATAGCAAGCTCCTATGCAATATTGGACTACAAGAGGGTCCAGAAGATAGCAATGTTTGCTTTGCAGATAGGAGTAGTCAGTGGATTAGCTTTATCCGCTGGCCTGTATACCTCATTCAGTAATATAGCAAGATTATTTACCAGTGACCCTGTGGTCCTAATGGTTGTCAAATCTTGTTCATTGTTTGTATGTGCCAGTCAACCAATTAATGCTCTGGCATTCATATTTGATGGTCTGCATTATGGTGTCTCAGATTTTGATTATGTCGCTCAAGCTACGATTGCTGTTGGGATAATGTCATCATTAGTTTTGTTATATGCTCCATCTGTTTTTGGACTTGCTGGAGTTTGGGCTGGTTTGACAACACTTATGGGATTGCGCATGGCTTCGGGCATTCTCAGGCTTTTATGGAAATCAGGACCTTGGTCATTTTTGCATGAGGAACCCAAAACAGAGCTAGCTGGTTGAAGATGGAGCGGCAACTAAGCAGTCAATACTACGGATTAAATGAACGAGCGGGTGATTCTGTAGGTATTTATGTTCAAGTCGGTCTGCTAGGAGATGCCATTTTTACTTGCTACCAACATTGTTCAATTGCTAGTGTTATTACTATGTGTAGCCGTTTTATTTATTCTAAAGGCTCCCTTGTTTCTTGTGGTGGTTTTCGTTTACTGTGTAAGCCAGTTTGCTGCTGCGTAAACAGCTTGATAAGTTTAGAAGGATAGAGAATTTGCCTTTCTTTAAAAAAAAAAAAGGA] consensusID : consensus_11984#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence [ATTTGAGGTATATCCACGCCCTGGGCAGTATATTGTATAAGGGTATTTTCCCAATTTTCATCCCTTTTATGAAAATAACAATTGGGGAAAAAGAAATTTTAAAATAAAGTCGGTTTCCCCTTTGGAGCCCTGTATTTCAAGTTTTGTAAATGATTTAAAGGAGGCTCTTTTAGGCTTTTATTTTAAAAATTTGAGAAATCGCAGGGTTTTATGGAAATCAGGCCCTTGGTCATTTTTGCATGGGGAACCCAAAACAGAGCTAATTGGTTGAAGATGGAGGGGCAAATAAGCAGTCAATATTTCGGATTAAATGAACGAGGGGGGGATTTTGTAGGTATTTATGTTCAAATCGGTTTGTTAGGAGAAGCCATTTTTTTTTGGTACCAACATTGTTCAATTGGTAGGGTTATTTTTATGGGTAGCCGTTTTATTTATTTTAAAGGCTCCCCTGTTTTTTGGGGGGGTTTTTGTTTACTGGGTAAACCAGTTTGGTGGTGGGTAAACAGCTTGATAAGTTTAGAAGGATAGAGAATTTCCCTTTTTTTAACCGGGGACCCCTTTGAATTTTTTTTGGGGCAAAGTATATTAATACTGTATT] [-] EMBL CB671273 [ATTTGAGGTATATCCACGCCCTGGGCAGTATATTGTATAAGGGTATTTTCCCAATTTTCATCCCTTTTATGAAAATAACAATTGGGGAAAAAGAAATTTTAAAATAAAGTCGGTTTCCCCTTTGGAGCCCTGTATTTCAAGTTTTGTAAATGATTTAAAGGAGGCTCTTTTAGGCTTTTATTTTAAAAATTTGAGAAATCGCAGGGTTTTATGGAAATCAGGCCCTTGGTCATTTTTGCATGGGGAACCCAAAACAGAGCTAATTGGTTGAAGATGGAGGGGCAAATAAGCAGTCAATATTTCGGATTAAATGAACGAGGGGGGGATTTTGTAGGTATTTATGTTCAAATCGGTTTGTTAGGAGAAGCCATTTTTTTTTGGTACCAACATTGTTCAATTGGTAGGGTTATTTTTATGGGTAGCCGTTTTATTTATTTTAAAGGCTCCCCTGTTTTTTGGGGGGGTTTTTGTTTACTGGGTAAACCAGTTTGGTGGTGGGTAAACAGCTTGATAAGTTTAGAAGGATAGAGAATTTCCCTTTTTTTAACCGGGGACCCCTTTGAATTTTTTTTGGGGCAAAGTATATTAATACTGTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11984#0 TTTCTCCTTTCTCCCCTCGAGTCTGATCCTCCCACTACCAACGTCCACCGGCACCGCAAC 60 consensus_11984#1 ------------------------------------------------------------ consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TTGCTGTCCTCTCCTGCCGGCTGGTCCAGCTCCATCTCTCTTCTTGCTCTGCCTCCCCCT 120 consensus_11984#1 ------------------------------------------------------------ consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TCAATTTAATTGATTCCTCCATCCAGATTTCGAGATCGAGATGAAGGCAGTGATGATGCA 180 consensus_11984#1 --------------------------------------AGATGACCGTAGTGATGATGCA 22 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 CCACCATCACGCGGCACGCCCTGCGCGCTGTCCAAGGCCTATCTCTTCCTCCTCCTCCTC 240 consensus_11984#1 CCACCATCACGCGGCACGCCCTGCGCGCTGTCCAAGGCCTATCTCTTCCTCCTCCTCCTC 82 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 AGCCCTGTTGGGTAGCAGACCAACCAGAGTCTCCTCCCCATCAAACCTGCCAAAGTTGCT 300 consensus_11984#1 AGCCCTGTTGGGTAGCAGACCAACCAGAGTCTCCTCCCCATCAAACCTGCCAAAGTTGCT 142 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 CATAAACCGGCGACACATCACCCCTCTTGCCACCAATGCTCCCCATGCTGTTGCTGAAGA 360 consensus_11984#1 CATAAACCGGCGACACATCACCCCTCTTGCCACCAATGCTCCCCATGCTGTTGCTGAAGA 202 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TGATGGCGCCATCTCTTTTGCTAATGCAACGCCAACGGAGCCTCCCATTGACTTGCGTCC 420 consensus_11984#1 TGATGGCGCCATCTCTTTTGCTAATGCAACGCCAACGGAGCCTCCCAT------------ 250 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 CGGGGGTGTCAGAAATGAGCTAATTCTTCTAGCTCTACCAGCAGTTCTTGGCCAAGCTAT 480 consensus_11984#1 ------------------------------------------------------------ consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TGATCCATTGGCGCAATTGATGGAGACTGCATATATTGGTAGATTAGGTATTATGGCGCT 540 consensus_11984#1 ------------------------------------------------------------ consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TGCCCTTCATAAAGTAGCTCTTGGGAGTGCTGAATTATAGCCATCCTTACTGCATGAAAG 600 consensus_11984#1 ------------------------------------------------------------ consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 CAAGCTGTCCCTTCTTTTGCCATTCATCCTTCTTTTTCATATATTCTGAAGGGGCTCTGG 660 consensus_11984#1 ---------------------------------------------------GGGCTCTGG 259 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 AGCTAGCATCAGCTGGTATTGGTGTGTCGGTTTTTAATATCGTGTCTAAGATTTTCAACA 720 consensus_11984#1 AGCTAGCATCAGCTGGTATTGGTGTGTCGGTTTTTAATATCGTGTCTAAGATTTTCAACA 319 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TTCCACTGTTGAGCATTGCAACCTCATTTGTGGCAGAAGACATTTCCAAGAATGCTAGCA 780 consensus_11984#1 TTCCACTGTTGAGCATTGCAACCTCATTTGTGGCAGAAGACATTTCCAAGAATGCTAGCA 379 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 AGCATTCAAGTTCAGGCAAATTGGAGCTGTCATCTGTATCTTCTGCATTGGTCTTAGCTG 840 consensus_11984#1 AGCATTCAAGTTCAGGCAAATTGGAGCTGTCATCTGTATCTTCTGCATTGGTCTTAGCTG 439 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 CTGGAATCGGTACAATTGAAGCATTGGCATTGTTCCTAGGATCAGGATTGTTTCTTAAAC 900 consensus_11984#1 CTGGAATCGGTACAATTGAAGCATTGGCATTGTTCCTAGGATCAGGATTGTTTCTTAAAC 499 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TAATGGGCGTGTCACCTGCCTCACCAATGCATAAACCTGCAAAACTTTTCCTTTCATTGA 960 consensus_11984#1 TAATGGGCGTGTCACCTGCCTCACCAATGCATAAACCTGCAAAACTTTTCCTTTCATTGA 559 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 GAGCTTTGGGAGCACCTGCAAATGTGATTATGTTAGCAGTTCAGGGAATATTTCGTGGAT 1020 consensus_11984#1 GAGCTTTGGGAGCACCTGCAAATGTGATTATGTTAGCAGTTCAGGGAATATTTCGTGGAT 619 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TCAAGGATACTAAGACTCCTGTATTTTTTATAGGTTTGGGAAATCTTTCAGCTGTAGTGC 1080 consensus_11984#1 TCAAGGATACTAAGACTCCTGTATTTTTTATAGGTTTGGGAAATCTTTCAGCTGTAGTGC 679 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TTCTTCCTTTACTTATTTACGTCTTTCGGCTTGGCATAACTGGAGCTGCAATTTCTACAG 1140 consensus_11984#1 TTCTTCCTTTACTTATTTACGTCTTTCGGCTTGGCATAACTGGAGCTGCAATTTCTACAG 739 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TTGCATCACAGTACATTATTACAATTTTGCTTCTCCAGTCTCTAAGTAAAAGAGCTGTTC 1200 consensus_11984#1 TTGCATCACAGTACATTATTACAATTTTGCTTCTCCAGTCTCTAAGTAAAAGAGCTGTTC 799 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TACTTCCTCCAAGGCTGGACCAGTTAGAGTTTAGCGGATATCTAAAATCTGGTGTCTTTT 1260 consensus_11984#1 TACTTCCTCCAAGGCTGGACCAGTTAGAGTTTAGCGGATATCTAAAATCTGGTG------ 853 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TCGTTCTTCTATCTCCCCCTCTCTCATTATATTCAATTGTTGTGCATGCTAAATCAGAGT 1320 consensus_11984#1 ------------------------------------------------------------ consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TCTTACACTTTCATTGATCTCAGTGTCCGTTCATTTTGTTCATTCTACAATGTGCGGTTA 1380 consensus_11984#1 ------------------------------------------------------------ consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 ACTGAAGTTCAGATTTTCTCTCCCAGGGGGCTTTGAGTTCTTTGGGTTAATTTGTCAAAA 1440 consensus_11984#1 ------------------------------------------------------------ consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TTTCCAATTCTGGATCCACTATGCATTTAACAATGATACCTTTATCGATAACAAGTTAAT 1500 consensus_11984#1 ------------------------------------------------------------ consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TGTAAAGTTTGGTTTTTGAAATAACTTTATATGCAAGAAAAAGGAAAGACTATCGTAGAG 1560 consensus_11984#1 ------------------------------------------------------------ consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TAGATGGTGTAGGTACGGTTACTGCTAGTATATTTTACAGATATGTTGATCAGCTTGTCA 1620 consensus_11984#1 ------------------------------------------------------------ consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TTGATAGAGCTTTCATTCATGGGCCATGCCCATTCTGTCCACTAATGAATGGGCTGTTCA 1680 consensus_11984#1 ------------------------------------------------------------ consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 GGGAACTTCTATTCTCCATATTGTTTCGTGGTACCATTTATATGTAGTAAAATGTGCTCA 1740 consensus_11984#1 ------------------------------------------------------------ consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 ATTCTAGGATTTGCAAATATTTGCTGTCATATTATTGGAAAGATAATGCATGTCTATGAT 1800 consensus_11984#1 ------------------------------------------------------------ consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 ATGCATCCTGAGAACCTCCATGTTATAATTTCATACTTCTTATCTTGTTTTTCCTTTTAT 1860 consensus_11984#1 ------------------------------------------------------------ consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TGCACTTACCACCATCTATAATTCCATCATCTGTTTTTGAAATGCTTAGGTGGCATGCTG 1920 consensus_11984#1 ----------------------------------------------------GCATGCTG 861 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TTAGGAAGAACCCTCTCGATTTTATTAACGATGACCATAGGGACATCAATGGCTGCTCGA 1980 consensus_11984#1 TTAGGAAGAACCCTCTCGATTTTATTAACGATGACCATAGGGACATCAATGGCTGCTCGA 921 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 CAAGGCCCAACAGCTATGGCAGCTCATCAGATATGCTTACAAGTATGGCTTGCGGTATCT 2040 consensus_11984#1 CAAGGCCCAACAGCTATGGCAGCTCATCAGATATGCTTACAAGTATGGCTTGCGGTATCT 981 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TTGCTTGCAGATGCTTTAGCTGTTTCTGCCCAGGCAATGATAGCAAGCTCCTATGCAATA 2100 consensus_11984#1 TTGCTTGCAGATGCTTTAGCTGTTTCTGCCCAGGCAATGATAGCAAGCTCCTATGCAATA 1041 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TTGGACTACAAGAGGGTCCAGAAGATAGCAATGTTTGCTTTGCAGGTCATGTGTCATTTC 2160 consensus_11984#1 TTGGACTACAAGAGGGTCCAGAAGATAGCAATGTTTGCTTTGCAG--------------- 1086 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TCTGTTTTCTATTGTGAAGCTTTGTTTTTCATGTATTCATAGATGCAATCGCCCTTTCTT 2220 consensus_11984#1 ------------------------------------------------------------ consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 GTTAACATAGAAAAATGGAGATTTTCTTGCAGATAGGAGTAGTCAGTGGATTAGCTTTAT 2280 consensus_11984#1 --------------------------------ATAGGAGTAGTCAGTGGATTAGCTTTAT 1114 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 CCGCTGGCCTGTATACCTCATTCAGTAATATAGCAAGATTATTTACCAGTGACCCTGTGG 2340 consensus_11984#1 CCGCTGGCCTGTATACCTCATTCAGTAATATAGCAAGATTATTTACCAGTGACCCTGTGG 1174 consensus_11984#2 ------------------------------------------------------------ consensus_11984#0 TCCTAATGGTTGTCAAATCTTGTTCATTGTTTGTATGTGCCAGTCAACCAATTAATGCTC 2400 consensus_11984#1 TCCTAATGGTTGTCAAATCTTGTTCATTGTTTGTATGTGCCAGTCAACCAATTAATGCTC 1234 consensus_11984#2 ----------------------------------ATTTGAGGTATATCCACGCCCTGGGC 26 ** ** * *** ** * consensus_11984#0 TGGCATTCATATTTGATGGTCTGCATTATGGTGTCTCAGATTTTGATTATGTCGCTCAAG 2460 consensus_11984#1 TGGCATTCATATTTGATGGTCTGCATTATGGTGTCTCAGATTTTGATTATGTCGCTCAAG 1294 consensus_11984#2 AGTATATTGTATAAGGGTATTTTCCCAATTTTCATCCCTTTTATGAAAATAACAATTGGG 86 * * *** * * * * ** * * ** *** ** * * * consensus_11984#0 CTACGATTGCTGTTGGGATAATGTCATCATTAGTTTTGTTATATGCTCCATCTGTTTTTG 2520 consensus_11984#1 CTACGATTGCTGTTGGGATAATGTCATCATTAGTTTTGTTATATGCTCCATCTGTTTTTG 1354 consensus_11984#2 GAAAAAGAAATTTTAAAATAAAGTCGGTTTCCCCTTTGGAGCCCTGTATTTCAAGTTTTG 146 * * * ** **** *** * **** * ** ***** consensus_11984#0 GACTTGCTGGAGTTTGGGCTGGTTTGACAACACTTATGGGATTGCGCATGGCTTCGGGCA 2580 consensus_11984#1 GACTTGCTGGAGTTTGGGCTGGTTTGACAACACTTATGGGATTGCGCATGGCTTCGGGCA 1414 consensus_11984#2 TAAATGATTTAAAGGAGGCTCTTTTA--GGCTTTTAT-------TTTAAAAATTTGAGAA 197 * ** * * **** *** * **** * ** * * * consensus_11984#0 TTCTCAGGCTTCTATGGAAATCAGGACCTTGGTCATTTTTGCATGAGGAACCCAAAACAG 2640 consensus_11984#1 TTCTCAGGCTTTTATGGAAATCAGGACCTTGGTCATTTTTGCATGAGGAACCCAAAACAG 1474 consensus_11984#2 ATCGCAGGGTTTTATGGAAATCAGGCCCTTGGTCATTTTTGCATGGGGAACCCAAAACAG 257 ** **** ** ************* ******************* ************** consensus_11984#0 AGCTAGCTGGTTGAAGATGGAGCGGCAACTAAGCAGTCAATACTACGGATTAAATGAACG 2700 consensus_11984#1 AGCTAGCTGGTTGAAGATGGAGCGGCAACTAAGCAGTCAATACTACGGATTAAATGAACG 1534 consensus_11984#2 AGCTAATTGGTTGAAGATGGAGGGGCAAATAAGCAGTCAATATTTCGGATTAAATGAACG 317 ***** *************** ***** ************* * *************** consensus_11984#0 AGCGGGTGATTCTGTAGGTATTTATGTTCAAGTCGGTCTGCTAGGAGATGCCATTTTTAC 2760 consensus_11984#1 AGCGGGTGATTCTGTAGGTATTTATGTTCAAGTCGGTCTGCTAGGAGATGCCATTTTTAC 1594 consensus_11984#2 AGGGGGGGATTTTGTAGGTATTTATGTTCAAATCGGTTTGTTAGGAGAAGCCATTTTTTT 377 ** *** **** ******************* ***** ** ******* ********* consensus_11984#0 TTGCTACCAACATTGTTCAATTGCTAGTGTTATTACTATGTGTAGCCGTTTTATTTATTC 2820 consensus_11984#1 TTGCTACCAACATTGTTCAATTGCTAGTGTTATTACTATGTGTAGCCGTTTTATTTATTC 1654 consensus_11984#2 TTGGTACCAACATTGTTCAATTGGTAGGGTTATTTTTATGGGTAGCCGTTTTATTTATTT 437 *** ******************* *** ****** **** ****************** consensus_11984#0 TAAAGGCTCCCTTGTTTCTTGTGGTGGTTTTCGTTTACTGTGTAAGCCAGTTTGCTGCTG 2880 consensus_11984#1 TAAAGGCTCCCTTGTTTCTTGTGGTGGTTTTCGTTTACTGTGTAAGCCAGTTTGCTGCTG 1714 consensus_11984#2 TAAAGGCTCCCCTGTTTTTTGGGGGGGTTTTTGTTTACTGGGTAAACCAGTTTGGTGGTG 497 *********** ***** *** ** ****** ******** **** ******** ** ** consensus_11984#0 CGTAAACAGCTTGATAAGTTTAGAAGGATAGAGAATTTGCCTTTCTTTAACCTGAGACCA 2940 consensus_11984#1 CGTAAACAGCTTGATAAGTTTAGAAGGATAGAGAATTTGCCTTTCTTTAAAAAAAAAAAA 1774 consensus_11984#2 GGTAAACAGCTTGATAAGTTTAGAAGGATAGAGAATTTCCCTTTTTTTAACCGGGGACCC 557 ************************************* ***** ***** * consensus_11984#0 CTTCGAATTATTTTTGGAGCAATGTATACTAATACTGTATTATTCAGTTCAAAGGGGCCC 3000 consensus_11984#1 GGA--------------------------------------------------------- 1777 consensus_11984#2 CTTTGAATTTTTTTTGGGGCAAAGTATATTAATACTGTATT------------------- 598 consensus_11984#0 TACGTAGCATTGTCCTAAAAAAAAAAAAAAAAAGGA 3036 consensus_11984#1 ------------------------------------ consensus_11984#2 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||