These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11989#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2939 fasta sequence [CGCATCGCATCGCACCACAAACCCTCCCCCCCGACCAGAAAGCCAAGAAAGAAACCTTTCTTCGTCGGTCTCTCTCTCTCTCTGCCCATGGACTTCTCGGAGCAGGACGTCGAAATCTTCGGCGAGGACTACGACGACGCCGAGGCCGACGGCGGCGGCGGCGGCGGTGCCTCGTCCGGCTCCTCCTCCCCGTCCTCATCCTCCTCGTCGTCCGCCGCCGGGTCCTCCTCCTCCTCCAGCGGCGCCTCCAGCAGCAGCGGCGGGGGCGGGGGTGGGGGCGAGGACGAGGACGGGGTCGACCAGGGGGACGCCAGGGGGTACGACGACGACCCGTTCGACGGCGCGCCCGCGAGGGCCGCCGGTGGGTACGGTGACGAGGAGAGGGGCGAGGGTGATGCGGAGGAGGAGGAGGAGGAGGAGGAGAGGGATTTGTTCGGCTCTGACAACGAGGATTACGTCAAGACCCCCGCGCGTAGCAACTACCTAGTCCCAGTGCTACCCTCAATACGGAACACCAACAATCATTCTCGGGGAGGATATGGGGGGCGGAATGGCAGAGGTCCACCTCTTCTTCCAAGGCCAGGAGGCCATCCAGGACGGCATAACTTTGGATATGGTGGGAGGTTTTCGCATGGAAATGGGCGTAATGTTGAAGGTTTTGTTTCAGAAATGAAGCTTAATAAGAGTGAAGAAACTTTATCTAGGAAGTTTGTTGCTTTTCAGGAGCCTTCTGAGATTGCATGCTACAGCCGTATTGAGGGTGGGGATGTATATTTTGATGACCGCAGCTTGAGGCTCTTCAAACGTAACATTTGCGACTATGTTGGTGAAAATCTCAATAAAGGATTTGAATCTTTTATAGAGAAAAGAGATTTGGGTTCAGAAGGATTTGGTGATCTTCTTGCATGCATAAGAAATTCAACTGTACCTCTTCAGAACATACATTTTGTGACATACCGCAACAATCTTAACAAGATATTGGCCACGGCTTATCTAAGAGAACCATGGAAGATGGGTGTGCACAAAAGAAATGGTGTTGTATACCTGGACGTCCATAAGCTCCCCGAAAGACCACAAAGTGAGGTTGAACGCCGGAGATGTTATTGGGGATATTCTTTTGAAAATCTTGCAACTGAGAATTCCATTGATGAGGATGGAAGAGGTATTGATGCAAATGTAGAGTTCTGTGCTGTAATAAAAACGAAATTGGGTGCACATCGTATTATCATGGGTGCTGAGATGGACTGCTGTGACGCAACTGATGATGGTAGGCGGTTCTACGTGGAGTTGAAAACAAGCAGAGAGCTGGAGTACCATACAGTGGAAAAATTTGAGAAAGAGAAGTTGCTTCGATTCTGGATTCAATCATTTATTGCTGGTGTTCCATATGTTGTTGTTGGATTCAGGTAGTATTCATTCTTTATTGTTTTCCCTTACGCCATCCATTTTTTGTAGTCAATGTGATGAGCTTTCTATCACCTGACAGCTGGCATTTTTGCAATGGAAAATGATTTTCGTGATAAAATGTTTGCTGATACAATTTACATGTTAAAGAAGCTGTGCAATGTTAGTATTGGGCCTTCTGCTTGGCTAGGAGATTGACATGCTGGTTATCACAAATCAGTATGCCACTATGGTTGTCCTCTACAAGGAACAAGAGTAATTTCATTTACACCTGGTGTCATCAACTGTGTACGAAGCAAGCTCATATTTGTGATAGTCAGTCGTTTCTCATGGATGTCCTGTTGCAATAAATAATTGTGCTGCCTACCCAACTTTTGTGGGGCTAAAGGCTGCTGGTGCTATTACAATAAATATTTTATTATTTGGTACTAAGGTATATTTTTCCCGGTACGTGTATGCTCATTTTCGAGTTAATTTTGTCTAAATAATTACAACACGATTTCATCTTCGGGATACCAAATCTTTGTGTAGTAAACTAGAGGTTCATGGAGACATGGACTATTTCTGGTAATATACTGATATGTCTCCATTTATTGATTGTAATAGGCATAATAACTTAAACACATACTTGATTTTCTAGATTCTTCAGTTCAATTTGTTTGACTGCATCACATGTACTTGATAAAATCGTATGCTTATTTTTAATACAATGTTCTGATTTGGTGTGGTATTTTGCTCAATATTTAACCTACCCCATATGATGCAAAAGAAGGCTTTTACTTTTTTAACTTCGACTTTGTCCCAATTTTACATTGATTCCAGTGGCTTGTATTTGTAACTTGAACTAGTACCCCTCAGCATTTTCCTACTAATAAAGGAGTTTCAACCATATATTTTTTTTACCTGCAGGAATGATGCTGGTGTACTTATACGGACTGAGAGACTAAGAACCAAAGAAATAACACAAAAGGTGAAAGCGAAGAACTACTGGCAGGGAGGTGTTTGCTTGGCCTTCGCTGATGAGGTCTTATGCTGGTTGTATGGCACTGTTAGAGAAAACGAGGACTACATCCTGCAATTTGTACATCCATTCAATCGCTTGGAACTTCTACGTGCCCAGTCTCCCTGTCCTGATGCCATCACTCATCATGTGGAGCAGCTCTCTGGTACAGCAGGCTAGGTTAATTCGTACACACAACTTCGGCAAGTAAAAGGGCTGTTTGAGGTAGATCCGTGTTGAAGGATTCTATTCTAGGGGTGCTGACTCTTAAACAAAACTTCGGCAATTATATAATGGTTGAGCTGACGACTTACCCAGCCAAGCAACATAGGCCGACGACTAAATGGTTTGCTCTTTGAACTGCCAAAGAGATTTTGAAATTGTCAAAACCTTGTGTTTCTCCAGTAACATTAAGTTATAAATTAGGGAAATGGAGAGCTATGCGGCAATGCTACTACTGGGTCATGCCACCGAGGCACCAATGATGTAACTCTCTACCAGATACCAGTACCAAGGGAAATGATATGAATTCTAG] [+] EMBL AK099734 [CGCATCGCATCGCACCACAAACCCTCCCCCCCGACCAGAAAGCCAAGAAAGAAACCTTTCTTCGTCGGTCTCTCTCTCTCTCTGCCCATGGACTTCTCGGAGCAGGACGTCGAAATCTTCGGCGAGGACTACGACGACGCCGAGGCCGACGGCGGCGGCGGCGGCGGTGCCTCGTCCGGCTCCTCCTCCCCGTCCTCATCCTCCTCGTCGTCCGCCGCCGGGTCCTCCTCCTCCTCCAGCGGCGCCTCCAGCAGCAGCGGCGGGGGCGGGGGTGGGGGCGAGGACGAGGACGGGGTCGACCAGGGGGACGCCAGGGGGTACGACGACGACCCGTTCGACGGCGCGCCCGCGAGGGCCGCCGGTGGGTACGGTGACGAGGAGAGGGGCGAGGGTGATGCGGAGGAGGAGGAGGAGGAGGAGGAGAGGGATTTGTTCGGCTCTGACAACGAGGATTACGTCAAGACCCCCGCGCGTAGCAACTACCTAGTCCCAGTGCTACCCTCAATACGGAACACCAACAATCATTCTCGGGGAGGATATGGGGGGCGGAATGGCAGAGGTCCACCTCTTCTTCCAAGGCCAGGAGGCCATCCAGGACGGCATAACTTTGGATATGGTGGGAGGTTTTCGCATGGAAATGGGCGTAATGTTGAAGGTTTTGTTTCAGAAATGAAGCTTAATAAGAGTGAAGAAACTTTATCTAGGAAGTTTGTTGCTTTTCAGGAGCCTTCTGAGATTGCATGCTACAGCCGTATTGAGGGTGGGGATGTATATTTTGATGACCGCAGCTTGAGGCTCTTCAAACGTAACATTTGCGACTATGTTGGTGAAAATCTCAATAAAGGATTTGAATCTTTTATAGAGAAAAGAGATTTGGGTTCAGAAGGATTTGGTGATCTTCTTGCATGCATAAGAAATTCAACTGTACCTCTTCAGAACATACATTTTGTGACATACCGCAACAATCTTAACAAGATATTGGCCACGGCTTATCTAAGAGAACCATGGAAGATGGGTGTGCACAAAAGAAATGGTGTTGTATACCTGGACGTCCATAAGCTCCCCGAAAGACCACAAAGTGAGGTTGAACGCCGGAGATGTTATTGGGGATATTCTTTTGAAAATCTTGCAACTGAGAATTCCATTGATGAGGATGGAAGAGGTATTGATGCAAATGTAGAGTTCTGTGCTGTAATAAAAACGAAATTGGGTGCACATCGTATTATCATGGGTGCTGAGATGGACTGCTGTGACGCAACTGATGATGGTAGGCGGTTCTACGTGGAGTTGAAAACAAGCAGAGAGCTGGAGTACCATACAGTGGAAAAATTTGAGAAAGAGAAGTTGCTTCGATTCTGGATTCAATCATTTATTGCTGGTGTTCCATATGTTGTTGTTGGATTCAGGTAGTATTCATTCTTTATTGTTTTCCCTTACGCCATCCATTTTTTGTAGTCAATGTGATGAGCTTTCTATCACCTGACAGCTGGCATTTTTGCAATGGAAAATGATTTTCGTGATAAAATGTTTGCTGATACAATTTACATGTTAAAGAAGCTGTGCAATGTTAGTATTGGGCCTTCTGCTTGGCTAGGAGATTGACATGCTGGTTATCACAAATCAGTATGCCACTATGGTTGTCCTCTACAAGGAACAAGAGTAATTTCATTTACACCTGGTGTCATCAACTGTGTACGAAGCAAGCTCATATTTGTGATAGTCAGTCGTTTCTCATGGATGTCCTGTTGCAATAAATAATTGTGCTGCCTACCCAACTTTTGTGGGGCTAAAGGCTGCTGGTGCTATTACAATAAATATTTTATTATTTGGTACTAAGGTATATTTTTCCCGGTACGTGTATGCTCATTTTCGAGTTAATTTTGTCTAAATAATTACAACACGATTTCATCTTCGGGATACCAAATCTTTGTGTAGTAAACTAGAGGTTCATGGAGACATGGACTATTTCTGGTAATATACTGATATGTCTCCATTTATTGATTGTAATAGGCATAATAACTTAAACACATACTTGATTTTCTAGATTCTTCAGTTCAATTTGTTTGACTGCATCACATGTACTTGATAAAATCGTATGCTTATTTTTAATACAATGTTCTGATTTGGTGTGGTATTTTGCTCAATATTTAACCTACCCCATATGATGCAAAAGAAGGCTTTTACTTTTTTAACTTCGACTTTGTCCCAATTTTACATTGATTCCAGTGGCTTGTATTTGTAACTTGAACTAGTACCCCTCAGCATTTTCCTACTAATAAAGGAGTTTCAACCATATATTTTTTTTACCTGCAGGAATGATGCTGGTGTACTTATACGGACTGAGAGACTAAGAACCAAAGAAATAACACAAAAGGTGAAAGCGAAGAACTACTGGCAGGGAGGTGTTTGCTTGGCCTTCGCTGATGAGGTCTTATGCTGGTTGTATGGCACTGTTAGAGAAAACGAGGACTACATCCTGCAATTTGTACATCCATTCAATCGCTTGGAACTTCTACGTGCCCAGTCTCCCTGTCCTGATGCCATCACTCATCATGTGGAGCAGCTCTCTGGTACAGCAGGCTAGGTTAATTCGTACACACAACTTCGGCAAGTAAAAGGGCTGTTTGAGGTAGATCCGTGTTGAAGGATTCTATTCTAGGGGTGCTGACTCTTAAACAAAACTTCGGCAATTATATAATGGTTGAGCTGACGACTTACCCAGCCAAGCAACATAGGCCGACGACTAAATGGTTTGCTCTTTGAACTGCCAAAGAGATTTTGAAATTGTCAAAACCTTGTGTTTCTCCAGTAACATTAAGTTATAAATTAGGGAAATGGAGAGCTATGCGGCAATGCTACTACTGGGTCATGCCACCGAGGCACCAATGATGTAACTCTCTACCAGATACCAGTACCAAGGGAAATGATATGAATTCTAG] [+] EMBL CB623296 [ GCCGGTGGGTACGGTGACGAGGAGAGGGGCGAGGGTGATGCGGAGGAGGAGGAGGAGGAGGAGGAGAGGGATTTGTTCGGCTCTGACAACGAGGATTACGTCAAGACCCCCGCGCGTAGCAACTACCTAGTCCCAGTGCTACCCTCAATACGGAACACCAACAATCATTCTCGGGGAGGATATGGGGGGCGGAATGGCAGAGGTCCACCTCTTCTTCCAAGGCCAGGAGGCCATCCAGGACGGCATAACTTTGGATATGGTGGGAGGTTTTCGCATGGAAATGGGCGTAATGTTGAAGGTTTTGTTTCAGAAATGAAGCTTAATAAGAGTGAAGAAACTTTATCTAGGAAGTTTGTTGCTTTTCAGGAGCCTTCTGAGATTGCATGCTACAGCCGTATTGAGGGTGGGGATGTATATTTTGATGACCGCAGCTTGAGGCTCTTCAAACGTAACATTTGCGACTATGTTGGTGAAAATCTCAATAAAGGATTTGAATCTTTTATAGAGAAAAGAGATTTGGGTTCAGAAGGATTTGGTGATCTTCTTGCATGCATAAGAAATTCAACTGTACCTCTTCAGAACATACATTTTGTGACATACCGCAACAATCTTAACAAGATATTGGCCACGGCTTATCTAAGAGAACCATGGAAGATGGGTGTGCACAAAAGAAATGGTGTTGTATACCTGGACGTCCATAAGCTCCCCGAAAGACCACAAAGTGAGGTTGAACGCCGGAGATGTTATTGGGGATATTCTTTTNGAAATCTTGCAACTGAGAAT ] [+] EMBL CB622911 [ GCCGGTGGGTACGGTGACGAGGAGAGGGGCGAGGGTGATGCGGAGGAGGAGGAGGAGGAGGAGGAGAGGGATTTGTTCGGCTCTGACAACGAGGATTACGTCAAGACCCCCGCGCGTAGCAACTACCTAGTCCCAGTGCTACCCTCAATACGGAACACCAACAATCATTCTCGGGGAGGATATGGGGGGCGGAATGGCAGAGGTCCACCTCTTCTTCCAAGGCCAGGAGGCCATCCAGGACGGCATAACTTTGGATATGGTGGGAGGTTTTCGCATGGAAATGGGCGTAATGTTGAAGGTTTTGTTTCAGAAATGAAGCTTAATAAGAGTGAAGAAACTTTATCTAGGAAGTTTGTTGCTTTTCAGGAGCCTTCTGAGATTGCATGCTACAGCCGTATTGAGGGTGGGGATGTATATTTTGATGACCGCAGCTTGAGGCTCTTCAAACGTAACATTTGCGACTATGTTGGTGAAAATCTCAATAAAGGATTTGAATCTTTTATAGAGAAAAGAGATTTGGGTTCAGAAGGATTTGGTGATCTTCTTGCATGCATAAGAAATTCAACTGTACCTCTTCAGAACATACATTTTGTGACATACCGCAACAATCTTAACAAGATATTGGCCACGGCTTATCTAAGAGAACCATGGAAGATGGGTGTGCACAAAAGAAATGGTGTTGTATACCTGGACGTCCATAAGCTCCCCNGAAGACCACAAAGTGAGGTTGAACGCCGGAGATGTT ] consensusID : consensus_11989#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 867 fasta sequence [AGTTCTGTGCTGTATAAAAACGAAATGGGGTGCACATCGTATTATCATGGGTGCTGAGATGGACTGCTGTGACGCAACTGATGATGGTAGGCGGTTCTACGTGGAGTTGAAAACAAGCAGAGAGCTGGAGTACCATACAGTGGAAAAATTTGAGAAAGAGAAGTTGCTTCGATTCTGGATTCAATCATTTATTGCTGGTGTTCCATATGTTGTTGTTGGATTCAGGAATGATGCTGGTGTACTTATACGGACTGAGAGACTAAGAACCAAAGAAATAACACAAAAGGTGAAAGCGAAGAACTACTGGCAGGGAGGTGTTTGCTTGGCCTTCGCTGATGAGGTCTTATGCTGGTTGTATGGCACTGTTAGAGAAAACGAGGACTACATCCTGCAATTTGTACATCCATTCAATCGCTTGGAACTTCTACGTGCCCAGTCTCCCTGTCCTGATGTCATCACTCATCATGTGGAGCAGCTCTCTGGTACAGCAGGCTAGGTTAATTCGTACACACAACTTCGGCAAGTAAAAGGGCTGTTTGAGGTAGATCCGTGTTGAAGGATTCTATTCTAGGGGTGCTGACTCTTAAACAAAACTTCGGCAATTATATAATGGTTGAGCTGACGACTTACCCAGCCAAGCAACATAGGCCGACGACTAAATGGTTTGCTCTTTGAACTGCCAAAGAGATTTTGAAATTGTCAAAACCTTGTGTTTCTCCAGTAACATTAAGTTATAAATTAGGGAAATGGAGAGCTATGCGGCAATGCTACTACTGGGTCATGCCACCGAGGCACCAATGATGTAACTCTCTACCAGATACCAGTACCAAGGGAAATGATATGAATTCTAGAGAGTTTCTGAACTAA] [-] EMBL CB623297 [AGTTCTGTGCTGTATAAAAACGAAATGGGGTGCACATCGTATTATCATGGGTGCTGAGATGGACTGCTGTGACGCAACTGATGATGGTAGGCGGTTCTACGTGGAGTTGAAAACAAGCAGAGAGCTGGAGTACCATACAGTGGAAAAATTTGAGAAAGAGAAGTTGCTTCGATTCTGGATTCAATCATTTATTGCTGGTGTTCCATATGTTGTTGTTGGATTCAGGAATGATGCTGGTGTACTTATACGGACTGAGAGACTAAGAACCAAAGAAATAACACAAAAGGTGAAAGCGAAGAACTACTGGCAGGGAGGTGTTTGCTTGGCCTTCGCTGATGAGGTCTTATGCTGGTTGTATGGCACTGTTAGAGAAAACGAGGACTACATCCTGCAATTTGTACATCCATTCAATCGCTTGGAACTTCTACGTGCCCAGTCTCCCTGTCCTGATGTCATCACTCATCATGTGGAGCAGCTCTCTGGTACAGCAGGCTAGGTTAATTCGTACACACAACTTCGGCAAGTAAAAGGGCTGTTTGAGGTAGATCCGTGTTGAAGGATTCTATTCTAGGGGTGCTGACTCTTAAACAAAACTTCGGCAATTATATAATGGTTGAGCTGACGACTTACCCAGCCAAGCAACATAGGCCGACGACTAAATGGTTTGCTCTTTGAACTGCCAAAGAGATTTTGAAATTGTCAAAACCTTGTGTTTCTCCAGTAACATTAAGTTATAAATTAGGGAAATGGAGAGCTATGCGGCAATGCTACTACTGGGTCATGCCACCGAGGCACCAATGATGTAACTCTCTACCAGATACCAGTACCAAGGGAAATGATATGAATTCTAGAGAGTTTCTGAAC ] [-] EMBL CB620452 [ GCTGTGACGCAACTGATGATGGTAGGCGGTTCTACGTGGAGTTGAAAACAAGCAGAGAGCTGGAGTACCATACAGTGGAAAAATTTGAGAAAGAGAAGTTGCTTCGATTCTGGATTCAATCATTTATTGCTGGTGTTCCATATGTTGTTGTTGGATTCAGGAATGATGCTGGTGTACTTATACGGACTGAGAGACTAAGAACCAAAGAAATAACACAAAAGGTGAAAGCGAAGAACTACTGGCAGGGAGGTGTTTGCTTGGCCTTCGCTGATGAGGTCTTATGCTGGTTGTATGGCACTGTTAGAGAAAACGAGGACTACATCCTGCAATTTGTACATCCATTCAATCGCTTGGAACTTCTACGTGCCCAGTCTCCCTGTCCTGATGTCATCACTCATCATGTGGAGCAGCTCTCTGGTACAGCAGGCTAGGTTAATTCGTACACACAACTTCGGCAAGTAAAAGGGCTGTTTGAGGTAGATCCGTGTTGAAGGATTCTATTCTAGGGGTGCTGACTCTTAAACAAAACTTCGGCAATTATATAATGGTTGAGCTGACGACTTACCCAGCCAAGCAACATAGGCCGACGACTAAATGGTTTGCTCTTTGAACTGCCAAAGAGATTTTGAAATTGTCAAAACCTTGTGTTTCTCCAGTAACATTAAGTTATAAATTAGGGAAATGGAGAGCTATGCGGCAATGCTACTACTGGGTCATGCCACCGAGGCACCAATGATGTAACTCTCTACCAGATACCAGTACCAAGGGAAATGATATGAATTCTAGAGAGTTTCTGAACTA ] [-] EMBL CB622912 [ CTGTGACGCAACTGATGATGGTAGGCGGTTCTACGTGGAGTTGAAAACAAGCAGAGAGCTGGAGTACCATACAGTGGAAAAATTTGAGAAAGAGAAGTTGCTTCGATTCTGGATTCAATCATTTATTGCTGGTGTTCCATATGTTGTTGTTGGATTCAGGAATGATGCTGGTGTACTTATACGGACTGAGAGACTAAGAACCAAAGAAATAACACAAAAGGTGAAAGCGAAGAACTACTGGCAGGGAGGTGTTTGCTTGGCCTTCGCTGATGAGGTCTTATGCTGGTTGTATGGCACTGTTAGAGAAAACGAGGACTACATCCTGCAATTTGTACATCCATTCAATCGCTTGGAACTTCTACGTGCCCAGTCTCCCTGTCCTGATGTCATCACTCATCATGTGGAGCAGCTCTCTGGTACAGCAGGCTAGGTTAATTCGTACACACAACTTCGGCAAGTAAAAGGGCTGTTTGAGGTAGATCCGTGTTGAAGGATTCTATTCTAGGGGTGCTGACTCTTAAACAAAACTTCGGCAATTATATAATGGTTGAGCTGACGACTTACCCAGCCAAGCAACATAGGCCGACGACTAAATGGTTTGCTCTTTGAACTGCCAAAGAGATTTTGAAATTGTCAAAACCTTGTGTTTCTCCAGTAACATTAAGTTATAAATTAGGGAAATGGAGAGCTATGCGGCAATGCTACTACTGGGTCATGCCACCGAGGCACCAATGATGTAACTCTCTACCAGATACCAGTACCAAGGGAAATGATATGAATTCTAGAGAGT ] [-] EMBL CA762320 [ GATTCGATCATGCACCGCGGGTGTCACATATGCTGCTCTCGCATCCAGCAATCACCCTGGTGTCCTCATCCGGCCTCAGACCCTAACACCCAAAGAAATAGCACAAAAGGTCAAACCGAAGACCTCCTGGCAGGGAGGTGTTCGCTTGGCCTTCGCTGATGAGGTCTTATCCTGGTTGTATGGCACTGTTAGAGAAACCGAGGACTACATCCTGCAATCTGTACATCCATTCAATCGCTTGGAACTTCTACGTGCCCAGTCTCCCTGTCCTGATGCCATCACTCATCATGTGGAGCAGCTCTCTGGTACAGCAGGCTAGGTTAATTCGTACACACACCTTCGGCAAGTAAAAGGGCTGTTTGAGGTAGATCCGTGTTGAAGGATTCTATTCTAGGGGTGCTGACTCTTAAACAAAACTTCGGCAATTATATAATGGTTGAGCTGACGACTTACCCAGCCAAGCAACATAGGCCGACGACTAAATGGTTTGCTCTTTGAGCTGCCAAAGAGATTTTGAAATTGTCAAAACCTTGTGTTTCTCCAGTAACATTAAGTTATAAATTAGGGAAATGGAGAGCTATGCGGCAATGCTACTACTGGGTCATGCCACCGAGGCACCAATGATGTAACTCTCTACCAGATACCAGTACCAAGGGAAATGATATGAATTCTAGAGAGTTTCTGAACTAA] consensusID : consensus_11989#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence [CCCCCCCTACCAGAAAGCCAAGAAAGAAACCTTTCTTCGTCGGTCTCTCTCTCTCTCTGCCCATGGACTTCTCGGAGCAGGACGTCGAAATCTTCGACGAGGACGGGGTCGACCAGGGGGACGCCAGGGGGTACGACGACGACCCGTTCGACGGCGCGCCCGCGAGGGCCGCCGGTGGGTACGGTGACGAGGAGAGGGGCGAGGGTGATGCGGAGGAGGAGGAGGAGGAGGAGGAGAGGGATTTGTTCGGCTCTGACAACGAGGATTACGTCAAGACCCCCGCGCGTAGCAACTACCTAGTCCCAGTGCTACCCTCAATACGGAACACCAACAATCATTCTCGGGGAGGATATGGGGGGCGGAATGGCAGAGGTCCACCTCTTCTTCCAAGGCCAGGAGGCCATCCAGGACGGCATAACTTTGGATATGGTGGGAGGTTTTCGCATGGAAATGGGCGTAATGTTGAAGGTTTTGTTTCAGAAATGAAGCTTAATAAGAGTGAAGAAACTTTATCTAGGAAGTTTGTTGCTTTTCAGGAGCCTTCTGAGATTGCATGCTACAGCCGTATTGAGGGTGGGGATGTATATTTTGATGACCGCAGCTTGAGGCTCTTCAAACGTAACATTTGCGACTATGTTGGTGAAAATCTCAATAAAGGATTTGAATCTTTTATAGAGAAAAGAGATTTGGGTTCAGAAGGATTTGGTGATCTTCTTGCATGCATAAGAAATTCAACTGTACCTCTTCAGAACATACATTTTGTGACATACCG] [+] EMBL CB620451 [CCCCCCCTACCAGAAAGCCAAGAAAGAAACCTTTCTTCGTCGGTCTCTCTCTCTCTCTGCCCATGGACTTCTCGGAGCAGGACGTCGAAATCTTCGACGAGGACGGGGTCGACCAGGGGGACGCCAGGGGGTACGACGACGACCCGTTCGACGGCGCGCCCGCGAGGGCCGCCGGTGGGTACGGTGACGAGGAGAGGGGCGAGGGTGATGCGGAGGAGGAGGAGGAGGAGGAGGAGAGGGATTTGTTCGGCTCTGACAACGAGGATTACGTCAAGACCCCCGCGCGTAGCAACTACCTAGTCCCAGTGCTACCCTCAATACGGAACACCAACAATCATTCTCGGGGAGGATATGGGGGGCGGAATGGCAGAGGTCCACCTCTTCTTCCAAGGCCAGGAGGCCATCCAGGACGGCATAACTTTGGATATGGTGGGAGGTTTTCGCATGGAAATGGGCGTAATGTTGAAGGTTTTGTTTCAGAAATGAAGCTTAATAAGAGTGAAGAAACTTTATCTAGGAAGTTTGTTGCTTTTCAGGAGCCTTCTGAGATTGCATGCTACAGCCGTATTGAGGGTGGGGATGTATATTTTGATGACCGCAGCTTGAGGCTCTTCAAACGTAACATTTGCGACTATGTTGGTGAAAATCTCAATAAAGGATTTGAATCTTTTATAGAGAAAAGAGATTTGGGTTCAGAAGGATTTGGTGATCTTCTTGCATGCATAAGAAATTCAACTGTACCTCTTCAGAACATACATTTTGTGACATACCG] consensusID : consensus_11989#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [AATGTGATGATGAATGGGTGTGAGCTGGACGACTTGACCCAAGCCATAGCACAACATTAGGCACGACGACTGATAAATCGGTGTTGGCTGCTTGTGAACTGCCACAAGAGATTGTTGAAATNTGGTGCAAAACCCTGTGTGGTTTGCTCCAGTGAACCTTAACGTTATGAAATTAGGGAAATGGAGAGCTATGCGGCAATGGCTACTACTGGGTCATGGCCACCCGAGGCACCTCATGGATGTAACTGCTGTCTACCAGATACCAGTACCAAGGGAAATGATATGAATTTTAGAGAGTTTNTG] [+] EMBL BQ907120 [AATGTGATGATGAATGGGTGTGAGCTGGACGACTTGACCCAAGCCATAGCACAACATTAGGCACGACGACTGATAAATCGGTGTTGGCTGCTTGTGAACTGCCACAAGAGATTGTTGAAATNTGGTGCAAAACCCTGTGTGGTTTGCTCCAGTGAACCTTAACGTTATGAAATTAGGGAAATGGAGAGCTATGCGGCAATGGCTACTACTGGGTCATGGCCACCCGAGGCACCTCATGGATGTAACTGCTGTCTACCAGATACCAGTACCAAGGGAAATGATATGAATTTTAGAGAGTTTNTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 CGCATCGCATCGCACCACAAACCCTCCCCCCCGACCAGAAAGCCAAGAAAGAAACCTTTC 60 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 TTCGTCGGTCTCTCTCTCTCTCTGCCCATGGACTTCTCGGAGCAGGACGTCGAAATCTTC 120 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 GGCGAGGACTACGACGACGCCGAGGCCGACGGCGGCGGCGGCGGCGGTGCCTCGTCCGGC 180 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 TCCTCCTCCCCGTCCTCATCCTCCTCGTCGTCCGCCGCCGGGTCCTCCTCCTCCTCCAGC 240 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 GGCGCCTCCAGCAGCAGCGGCGGGGGCGGGGGTGGGGGCGAGGACGAGGACGGGGTCGAC 300 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 CAGGGGGACGCCAGGGGGTACGACGACGACCCGTTCGACGGCGCGCCCGCGAGGGCCGCC 360 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 GGTGGGTACGGTGACGAGGAGAGGGGCGAGGGTGATGCGGAGGAGGAGGAGGAGGAGGAG 420 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 GAGAGGGATTTGTTCGGCTCTGACAACGAGGATTACGTCAAGACCCCCGCGCGTAGCAAC 480 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 TACCTAGTCCCAGTGCTACCCTCAATACGGAACACCAACAATCATTCTCGGGGAGGATAT 540 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 GGGGGGCGGAATGGCAGAGGTCCACCTCTTCTTCCAAGGCCAGGAGGCCATCCAGGACGG 600 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 CATAACTTTGGATATGGTGGGAGGTTTTCGCATGGAAATGGGCGTAATGTTGAAGGTTTT 660 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 GTTTCAGAAATGAAGCTTAATAAGAGTGAAGAAACTTTATCTAGGAAGTTTGTTGCTTTT 720 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 CAGGAGCCTTCTGAGATTGCATGCTACAGCCGTATTGAGGGTGGGGATGTATATTTTGAT 780 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 GACCGCAGCTTGAGGCTCTTCAAACGTAACATTTGCGACTATGTTGGTGAAAATCTCAAT 840 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 AAAGGATTTGAATCTTTTATAGAGAAAAGAGATTTGGGTTCAGAAGGATTTGGTGATCTT 900 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 CTTGCATGCATAAGAAATTCAACTGTACCTCTTCAGAACATACATTTTGTGACATACCGC 960 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 AACAATCTTAACAAGATATTGGCCACGGCTTATCTAAGAGAACCATGGAAGATGGGTGTG 1020 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 CACAAAAGAAATGGTGTTGTATACCTGGACGTCCATAAGCTCCCCGAAAGACCACAAAGT 1080 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 GAGGTTGAACGCCGGAGATGTTATTGGGGATATTCTTTTGAAAATCTTGCAACTGAGAAT 1140 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 TCCATTGATGAGGATGGAAGAGGTATTGATGCAAATGTAGAGTTCTGTGCTGTAATAAAA 1200 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 ACGAAATTGGGTGCACATCGTATTATCATGGGTGCTGAGATGGACTGCTGTGACGCAACT 1260 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 GATGATGGTAGGCGGTTCTACGTGGAGTTGAAAACAAGCAGAGAGCTGGAGTACCATACA 1320 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 GTGGAAAAATTTGAGAAAGAGAAGTTGCTTCGATTCTGGATTCAATCATTTATTGCTGGT 1380 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 GTTCCATATGTTGTTGTTGGATTCAGGTAGTATTCATTCTTTATTGTTTTCCCTTACGCC 1440 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 ATCCATTTTTTGTAGTCAATGTGATGAGCTTTCTATCACCTGACAGCTGGCATTTTTGCA 1500 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 ATGGAAAATGATTTTCGTGATAAAATGTTTGCTGATACAATTTACATGTTAAAGAAGCTG 1560 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 TGCAATGTTAGTATTGGGCCTTCTGCTTGGCTAGGAGATTGACATGCTGGTTATCACAAA 1620 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 TCAGTATGCCACTATGGTTGTCCTCTACAAGGAACAAGAGTAATTTCATTTACACCTGGT 1680 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 GTCATCAACTGTGTACGAAGCAAGCTCATATTTGTGATAGTCAGTCGTTTCTCATGGATG 1740 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 TCCTGTTGCAATAAATAATTGTGCTGCCTACCCAACTTTTGTGGGGCTAAAGGCTGCTGG 1800 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 TGCTATTACAATAAATATTTTATTATTTGGTACTAAGGTATATTTTTCCCGGTACGTGTA 1860 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 TGCTCATTTTCGAGTTAATTTTGTCTAAATAATTACAACACGATTTCATCTTCGGGATAC 1920 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 CAAATCTTTGTGTAGTAAACTAGAGGTTCATGGAGACATGGACTATTTCTGGTAATATAC 1980 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 ------------------------------------------------------------ consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 TGATATGTCTCCATTTATTGATTGTAATAGGCATAATAACTTAAACACATACTTGATTTT 2040 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 -------------------------------------------------AGTTCTGTGCT 11 consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 CTAGATTCTTCAGTTCAATTTGTTTGACTGCATCACATGTACTTGATAAAATCGTATGCT 2100 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 GTATAAAAACGAAATG----GGGTGCACATCGTATTATCATGGGTGCTGAGATGGACTGC 67 consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 TATTTTTAATACAATGTTCTGATTTGGTGTGGTATTTTGCTCAATATTTAACCTACCCCA 2160 consensus_11989#2 ------------------------------------------------------------ consensus_11989#1 TGTGACGCAACTGATGATGGTAGGCGGTTCTACGTGGAGTTGAAAACAAGCAGAGAGCTG 127 consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 TATGATGCAAAAGAAGGCTTTTACTTTTTTAACTTCGACTTTGTCCCAATTTTACA--TT 2218 consensus_11989#2 ----------CCCCCCCTACCAGAAAGCCAAGAAAGAAACCTTTCTTCGTCGGTCTCTCT 50 consensus_11989#1 GAGTACCATACAGTGGAAAAATTTGAGAAAGAGAAGTTGCTTCGATTCTGGATTCAATCA 187 consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 GATTCCAGTGGCTTGTATTTGTAACTTGAACTAGTACCCCTCAGCATTT---TCCTACTA 2275 consensus_11989#2 CTCTCTCTGCCCATGGACTTCTCGGAGCAGGACGTCGAAATCTTCGACGAGGACGGGGTC 110 consensus_11989#1 TTTATTGCTGGTGTTCCATATGTTGTTGTTGGATTCAGGAATGATGCTGGTGTACTTAT- 246 consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 ATAAAGGAGTTTCAACCATATATTTTTTTTACCTGCAGGAATGATGCTGGTGTACTTAT- 2334 consensus_11989#2 GACCAGGGGGACGCCAGGGGGTACGACGACGACCCGTTCGACGGCGCGCCCGCGAGGGCC 170 consensus_11989#1 ACGGACTGAGAGACTAAGAACCAAAGAAATAACACAAAAGGTGAAAGCGAAGAACTACTG 306 consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 ACGGACTGAGAGACTAAGAACCAAAGAAATAACACAAAAGGTGAAAGCGAAGAACTACTG 2394 consensus_11989#2 GCCGGTGGGTACGGTGACGAGGAGAGGGGCGAGGGTGATGCGGAGGAGGAGGAGGAGGAG 230 consensus_11989#1 GCAGGGAGGTGTTTGCTTGGCCTTCGCTGATGAGGTC---TTATGCTGGTTGTATGGCAC 363 consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 GCAGGGAGGTGTTTGCTTGGCCTTCGCTGATGAGGTC---TTATGCTGGTTGTATGGCAC 2451 consensus_11989#2 GAGGAGAGGGATTTGTTCGGCTCTGACAACGAGGATTACGTCAAGACCCCCGCGCGTAGC 290 consensus_11989#1 TGTTAGAGAAAACGAGGACTACATCCTGCAATTTGTACATCCATTCAATCGCTTGGAACT 423 consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 TGTTAGAGAAAACGAGGACTACATCCTGCAATTTGTACATCCATTCAATCGCTTGGAACT 2511 consensus_11989#2 AACTACCTAGTCCCAGTGCTACCCTCAATACGGAACACCAACAATCATTCTCGGGGAGGA 350 consensus_11989#1 TCTACGTGCCCAGTCTCCCTGTCCTGATGTCATCACTCATCATGTGGAGCAGCTCTCTGG 483 consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 TCTACGTGCCCAGTCTCCCTGTCCTGATGCCATCACTCATCATGTGGAGCAGCTCTCTGG 2571 consensus_11989#2 TATGGGGGGCGGAATGGCAGAGGTCCACCTCTTCTTCCA--AGGCCAGGAGGCCATCCAG 408 consensus_11989#1 TACAGCAGGCTAGGTTAATTCGTACACACAACTTCGGCAAGTAAAAGGGCTGTTTGAGGT 543 consensus_11989#3 ------------------------------------------------------------ consensus_11989#0 TACAGCAGGCTAGGTTAATTCGTACACACAACTTCGGCAAGTAAAAGGGCTGTTTGAGGT 2631 consensus_11989#2 GACGGCA--TAACTTTGGATATGGTGGGAGGTTTTCGCATGGAAATGGGCGTAATGTTGA 466 consensus_11989#1 AGATCCGTGTTGAAGGATTCTATTCTAGGGGTGCTGACTCTTAAACAAAACTTCGGCAAT 603 consensus_11989#3 -------------AATGTGATGATGAATGGGTGTGAGCTGGACGACTTGACCCAAGCCAT 47 consensus_11989#0 AGATCCGTGTTGAAGGATTCTATTCTAGGGGTGCTGACTCTTAAACAAAACTTCGGCAAT 2691 consensus_11989#2 AGGTTTTGTTTCAGAAATGAAGCTTAATAAGAGTGAA----GAAACTTTATCTAGGAAGT 522 * * * * * ** * * * consensus_11989#1 TATATAATGGTTGAGCTGACGACTTACCCAGCCAAGCA-ACATAGGCCGACGACTAAATG 662 consensus_11989#3 AGCACAACATTAGGCACGACGACTGA----------------TAAATCGGTG------TT 85 consensus_11989#0 TATATAATGGTTGAGCTGACGACTTACCCAGCCAAGCA-ACATAGGCCGACGACTAAATG 2750 consensus_11989#2 T-TGTTGCTTTTCAGGAGCCTTCTGAGATTGCATGCTACAGCCGTATTGAGGGTGGGGAT 581 * * * ** * * * consensus_11989#1 GTTTGCTCTTTGAACTGCCA-AAGAGATT-TTGAAATT--GT-CAAAACCTTGTGT---- 713 consensus_11989#3 GGCTGCT-TGTGAACTGCCACAAGAGATTGTTGAAATNTGGTGCAAAACCCTGTGTGGTT 144 consensus_11989#0 GTTTGCTCTTTGAACTGCCA-AAGAGATT-TTGAAATT--GT-CAAAACCTTGTGT---- 2801 consensus_11989#2 GTATATTTTGATGACCGCAGCTTGAGGCTCTTCAAACGTAACATTTGCGACTATGT---T 638 * * * * ** ** *** * ** *** * *** consensus_11989#1 TTCTCCAGT-AACATTAA-GTTAT-AAATTAGGGAAATGGAGAGCTATGCGGCAATG-CT 769 consensus_11989#3 TGCTCCAGTGAACCTTAACGTTATGAAATTAGGGAAATGGAGAGCTATGCGGCAATGGCT 204 consensus_11989#0 TTCTCCAGT-AACATTAA-GTTAT-AAATTAGGGAAATGGAGAGCTATGCGGCAATG-CT 2857 consensus_11989#2 GGTGAAAATCTCAATAAAGGATTTGAATCTTTTATAGAGAAAAGAGATTTGGGTTCA-GA 697 * * * ** * * * ** * * * * ** ** ** consensus_11989#1 ACTACTGGGTCATG-CCACC-GAGGCACC--AATGATGTAACT---CTCTACCAGATACC 822 consensus_11989#3 ACTACTGGGTCATGGCCACCCGAGGCACCTCATGGATGTAACTGCTGTCTACCAGATACC 264 consensus_11989#0 ACTACTGGGTCATG-CCACC-GAGGCACC--AATGATGTAACT---CTCTACCAGATACC 2910 consensus_11989#2 AGGATTTGGTGATC-TTCTTGCATGCATA--AGAAATTCAACTGTACCTCTTCAGA-ACA 753 * * * *** ** * *** * ** **** **** ** consensus_11989#1 AGTACCAAGGGAAATGATATGAATTCTAGAGAGTTTCTGAACTAA 867 consensus_11989#3 AGTACCAAGGGAAATGATATGAATTTTAGAGAGTTTNTG------ 303 consensus_11989#0 AGTACCAAGGGAAATGATATGAATTCTAG---------------- 2939 consensus_11989#2 TACATTTTGTGACATACCG-------------------------- 772 * * ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||