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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11990#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1278 fasta sequence
[TGACATGGACTGAAGGGGTAGAAAAATTAGGGTTTACTCGAGACTCGAGAGAGGAGAGCTCGCCCGCTAGGGTTTCGCGGGAGATGGCGCAGGCGGTGGAGGAGTGGTACCGGCAGATGCCCATCATCACGCGCTCCTACCTCACCGCCGCCGTCGTCACCACCGTCGGCTGCACCCTCGAGATCATTTCGCCCTACCACCTGTATCTGAACCCCAAGCTGGTGGTGCAGCACTACGAGATCTGGCGCCTCGTCACCAACTTCCTCTACTTCCGTAAGATGGATTTGGACTTTCTGTTCCACATGTTTTTTCTTGCACGATACTGCAAGCTTCTTGAGGAGAACTCATTCAGAGGAAGAACTGCTGACTTTTTCTACATGCTCTTGTTTGGCGCTACTGTCCTGACTGGCATTGTTCTGATTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATTCATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCTTCTT-GGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCA-TGTGTACTACTTCCT-GGAAGATGTATACCCGCGGATGACTGGGA-GGCGTCCCCTGAAGACTCCTTCGTTCATCAAGGCGCTATTTGCTGATGACAATGTTGTTGTGGCAAGGCCACCCA-ATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTGCCATTCGAAGGCAGTTACTGATTCGAGAGTTC------TTTTTTTTTTTTCATCTGTTCAAATTGCGAAATTGTACAAGCAATGTTCCCGTGTATTTATACAGGCTATAGATCAGAGAATTATTGTGCATAAGAAAGCATTTAGTAGTATCTGGGGCAGCTAAATTTCTTAACTGGACACGAAGGGTGAAGGAAATGGTTTACGAGTTTCAACCGGCTGGACAATGCCGCCATCCTTGGTTGCAGAAACTGATCCTTTTTGCGACGATTGACATCTGACCGGGATACTTTTCAATGTGGTAGTCTATTGGTAACGATAACTGTATCCATCGTTGTGATGTTTGTCCCTGCGATTTATGGTGTCAGAAATGTTAGAATGTTTTATATACTGTTTGGGTTTGAAGAATATTGGTCGAAGATGACCCTCGAAAAAAAAAAAAAAAAA]
[+] EMBL CF311946 [TGACATGGACTGAAGGGGTAGAAAAATTAGGGTTTACTCGAGACTCGAGAGAGGAGAGCTCGCCCGCTAGGGTTTCGCGGGAGATGGCGCAGGCGGTGGAGGAGTGGTACCGGCAGATGCCCATCATCACGCGCTCCTACCTCACCGCCGCCGTCGTCACCACCGTCGGCTGCACCCTCGAGATCATTTCGCCCTACCACCTGTATCTGAACCCCAAGCTGGTGGTGCAGCACTACGAGATCTGGCGCCTCGTCGCCAACTTCCTCTACTTCCGTAAGATGGATTTGGACTTTCTGTTCCACATGTTTTTTCTTGCACGATACTGCAAGCTTCTTGAGGAGAACTCATTCAGAGGAAGAACTGCTGACTTTTTCTACATGCTCTTGTTTGGCGCTACTGTCCTGACTGGCATTGTTCTGATTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATTCATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCTTCTTGGGGTTTGTTCACCTTTACTGCTG ]
[+] EMBL CB681884 [ ggtcccCTCGAGACTCGAGAGAGGAGAGCTCGCCCGCTAGGGTTTCGCGGGAGATGGCGCTTGCGGTGGAGGAGTGGTACCGGCAGATGCCCATCATCACGCGCTCCTACCTCACCGACGCCGTCGTCACCACCGTCCGCTGCACCCTCTAGATCATTTCGCCCTACCACCTGTATCTGAACCCCAAGCTGGTGGTGCAACACTACTAGATCTGGCGCCTCGTCACCAACTTCCTCTACTTCCGTAAGATGGATTTGGACTTTCTGTTCCACATGGTTTTTCTTGCACGATACTGCAAGCTTCTTGAGGAGAACTCATTCACAGGAAGAACTGCTGACTTTTTCTACATGCTCTTGTTTGGCGCTACTGTCCTGACTGGCATTGTTCTGATTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCATAATCCTGTTCTTGAGCAATTCATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCTTCTT GGGTTTGTTCACCTTTGCTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCA TGTGTACTACTTCC ]
[+] EMBL CF312110 [ TCGAGACTCGAGAGAGGAGAGCTCGCCCGCTAGGGTTTCGCGGGAGATGGCGCAGGCGGTGGAGGAGTGGTACCGGCAGATGCCCATCATCACGCGCTCCTACCTCACCGCCGCCGTCGTCACCACCGTCGGCTGCACCCTCGAGATCATTTCGCCCTATCACCTG ]
[+] EMBL AK068059 [ CTCGAGAGAGGAGAGCTCGCCCGCTAGGGTTTCGCGGGAGATGGCGCAGGCGGTGGAGGAGTGGTACCGTCAGATGCCCATCATCACGCGCTCCTACCTCACCGCCGCCGTCGTCACCACCGTCGGCTGCACCCTCGAGATCATTTCGCCCTACCACCTGTATCTGAACCCCAAGCTGGTGGTGCAGCACTACGAGATCTGGCGCCTCGTCACCAACTTCCTCTACTTCCGTAAGATGGATTTGGACTTTCTGTTCCACATGTTTTTTCTTGCACGATACTGCAAGCTTCTTGAGGAGAACTCATTCAGAGGAAGAACTGCTGACTTTTTCTACATGCTCTTGTTTGGCGCTACTGTCCTGACTGGCATTGTTCTGATTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATTCATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCTTCTT GGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCA TGTGTACTACTTCCT GGAAGATGTATACCCGCGGATGACTGGGA GGCGTCCCCTGAAGACTCCTTCGTTCATCAAGGCGCTATTTGCTGATGACAATGTTGTTGTGGCAAGGCCACCCA ATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTGCCATTCGAAGGCAGTTACTGATTCGAGAGTTC TTTTTTTTTTTTCATCTGTTCAAATTGCGAAATTGTACAAGCAATGTTCCCGTGTATTTATACAGGCTATAGATCAGAGAATTATTGTGCATAAGAAAGCATTTAGTAGTATCTGGGGCAGCTAAATTTCTTAACTGGACACGAAGGGTGAAGGAAATGGTTTACGAGTTTCAACCGGCTGGACAATGCCGCCATCTTTGGTTGCAGAAACTGATCCTTTTTGCGACGATTGACATCTGACCGGGATACTTTTCAATGTGGTA ]
[-] EMBL CB681885 [ TGTTCTGATTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATTCATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCTTCTT GGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCA TGTGTACTACTTCCT GGAAGATGTATACCCGCGGATGACTGGGA GGCGTCCCCTGAAGACTCCTTCGTTCATCAAGGCGCTATTTGCTGATGACAATGTTGTTGTGGCAAGGCCACCCA ATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTGCCATTCGAAGGCAGTTACTGATTCGAGAGTTC TTTTTTTTTTCATCTGTTCAAATTGCGAAATTGTACAAGCAATGTTCCCGTGTATTTATACAGGCTATAGATCAGAGAATTATTGTGCATAAGAAAGCATTTAGTAGTATCTGGGGCAGCTAAATTTCTTAACTGGACACGAAGGGTGAAGGAAATGGTTTACGAGTTTCAACCGGCTGGACAATGCCGCCATCCTTGGTTGCAGAAACTGATCCTTTTTGCGACGATTGACATCTGAGGGGGATACTTTTCAATGTGGTA ]
[-] EMBL CF311947 [ AGCTTCTT GGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCA TGTGTACTACTTCCT GGAAGATGTATACCCGCGGATGACTGGGA GGCGTCCCCTGAAGACTCCTTCGTTCATCAAGGCGCTATTTGCTGATGACAATGTTGTTGTGGCAAGGCCACCCACATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGATCCCCAGGCCCAATGATCAATTGCCATTCGAAGGCAGTTACTGATTCGAGAGTTCTT TTTTTTTTTTTTCATCTGTTCAAATTGCGAAATTGTACAAGCAATGTTCCCGTGTATTTATACAGGCTATAGATCAGAGAATTATTGTGCATAAGAAAGCATTTAGTAGTATCTGGGGCAGCTAAATTTCTTAACTGGACACGAAGGGTGAAGGAAATGGTTTACGAGTTTCAACCGGCTGGACAATGCCGCCATCCTTGGTTGCAGAAAaa ]
[-] EMBL CA762302 [ TTCTTTAATTTTTTGGGAACCAGTCCATGGGTTGTTTTCCTGGGTTTGAATCCTGGGCACTGTGTACT CTTCCTGGGAGGAGGT CCCCCCCGGATTGCTTGGAGGGCGTCCCCTGAAAAATCCTTCGTTCATCCAGGCGCTATTGGCTGACGACAATGTTGTTGTGGCAGGCCCACCCA ATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTGCCATTCGAAGGCAGTTACTGATTCGAGAGTTC TTTTTTTTTCATCTGTTCAAATTGCGAAATTGTACAAGCAATGTTCCCGTGTATTTATACAGGCTATAGATCAGAGAATTATTGCGCATAAGAAAGCATTTAGTAGTATCTGGGGCAGCTAAATTTTTTAACTGGACCCGAAGGGTGAAGGAAATGGTTTACGAGTTTCAACCGGCTGGACAATGCCGCCATCCTTGGTTGCAGAAACTGATCCTTTTTGCGACGATTGACATCTGACCGGGATACTTTTCAATATGGTAGTCTATTGGTAACGATAACTGTATCCATCGTTGTGATGTTTGTCCCTGCGATTTATGGTGTCAGAAATGTTAGAATGTTTTATATACTGTTTGGGTTTGAAGAATATTGGTCGAAGATGACCCTCGAAAAAAAAAAAAAAAAA]
[-] EMBL CF328653 [ TTGTTGTGGCAAGGCCACCCA ATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTGCCATTCGAAGGCAGTTACTGATTCGAGAGTTCTTTTTTTTTTTTTTTTTTCATCTGTTCAAATTGCGAAATTGTACAAGCAATGTTCCCGTGTATTTATACAGGCTATAGATCAGAGAATTATTGTGCATAAGAAAGCATTTAGTAGTATCTGGGGCAGCTAAATTTCTTAACTGGACACGAAGGGTGAAGGAAATGGTTTACGAGTTTCAACCGGCTGGACGATGCCGCCATCCTTGGTTGCAGAAACTGATCCTTTTTGCGACGATTGACATCTGACCGGGATACTTTTCAATGTGGTAGTCTATTGGTAACGATAACTGTATCAATCGTTGTGATGTTTGTCCTTGCGATTTATGGTATCAGAAATGTTAGAATGTTTTATAaaaaa ]
consensusID : consensus_11990#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 864 fasta sequence
[TTCGGGTCAATTAGGGTTTACTCGAGACTCGAGAGAGGAGATCATTTCGCCCTACGAGATCTGGCGCCTCGTCACCAACTTCCTCTACTTCCGTAAGATGGATTTGGACTTTCTGCTCCACATGTTTTTTCTTGCACGATACTGCAAGCTTCTTGGGGAGAACTCATTCAGAGGAAGAACTGCTGACTTTTTCTACATGCTCTTGTTTGGCGCTACTGTCCTGACTGGCATTGTTCTGATTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATTCATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCTTCTTGGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCATGTGTACTACTTCCTGGAAGATGTACACCCGCGGATGACTGGGAGGCGTCCCCTGAAGACTCCTTCGTTCATCAAGGCGCTATTTGCTGACGACAATGNTGTTGTGGCAAGGCCACCCAATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTGCCATTCGAAGGCAGNTACTGATTCGAGAGNTCTTTTTTTTTCATCTGGTCAAATTGCGAAATTGNACAAGCAATGGTCCCGNGTATTTATACAGGCTATAGATCAGANAATTATTGCGCATAANAAAGCATTTAGTAGTATCTGGGGGCAGCTNAATTTCTTACTGGACCCGAAGGGNGAAGGAAAGGGTTTACCAGTTTNAACC]
[+] EMBL CA767595 [TTCGGGTCAATTAGGGTTTACTCGAGACTCGAGAGAGGAGATCATTTCGCCCTACGAGATCTGGCGCCTCGTCACCAACTTCCTCTACTTCCGTAAGATGGATTTGGACTTTCTGCTCCACATGTTTTTTCTTGCACGATACTGCAAGCTTCTTGGGGAGAACTCATTCAGAGGAAGAACTGCTGACTTTTTCTACATGCTCTTGTTTGGCGCTACTGTCCTGACTGGCATTGTTCTGATTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATTCATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCTTCTTGGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTATTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCATGTGTACTACTTCCTGGAAGATGTACACCCGCGGATGACTGGGAGGCGTCCCCTGAAGACTCCTTCGTTCATCAAGGCGCTATTTGCTGACGACAATGNTGTTGTGGCAAGGCCACCCAATGCTGGGCTTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTGCCATTCGAAGGCAGNTACTGATTCGAGAGNTCTTTTTTTTTCATCTGGTCAAATTGCGAAATTGNACAAGCAATGGTCCCGNGTATTTATACAGGCTATAGATCAGANAATTATTGCGCATAANAAAGCATTTAGTAGTATCTGGGGGCAGCTNAATTTCTTACTGGACCCGAAGGGNGAAGGAAAGGGTTTACCAGTTTNAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11990#0 TGACATGGACTGAAGGGGTAGAAAAATTAGGGTTTACTCGAGACTCGAGAGAGGAGAGCT 60
consensus_11990#1 ------------------------------------------------------------
consensus_11990#0 CGCCCGCTAGGGTTTCGCGGGAGATGGCGCAGGCGGTGGAGGAGTGGTACCGGCAGATGC 120
consensus_11990#1 ------------------------------------------------------------
consensus_11990#0 CCATCATCACGCGCTCCTACCTCACCGCCGCCGTCGTCACCACCGTCGGCTGCACCCTCG 180
consensus_11990#1 --------------------------------------------------------TTCG 4
***
consensus_11990#0 AGATCATTTCGCCCTACCACCTGTATCTGAACCCCAAGCTGGTGGTGCAGCACTACGAGA 240
consensus_11990#1 GGTCAATTAGGGTTTAC--TCGAGACTCGAG---AGAGGAGATCATTTCGCCCTACGAGA 59
* *** * *** * * ** ** * * * ** ********
consensus_11990#0 TCTGGCGCCTCGTCACCAACTTCCTCTACTTCCGTAAGATGGATTTGGACTTTCTGTTCC 300
consensus_11990#1 TCTGGCGCCTCGTCACCAACTTCCTCTACTTCCGTAAGATGGATTTGGACTTTCTGCTCC 119
******************************************************** ***
consensus_11990#0 ACATGTTTTTTCTTGCACGATACTGCAAGCTTCTTGAGGAGAACTCATTCAGAGGAAGAA 360
consensus_11990#1 ACATGTTTTTTCTTGCACGATACTGCAAGCTTCTTGGGGAGAACTCATTCAGAGGAAGAA 179
************************************ ***********************
consensus_11990#0 CTGCTGACTTTTTCTACATGCTCTTGTTTGGCGCTACTGTCCTGACTGGCATTGTTCTGA 420
consensus_11990#1 CTGCTGACTTTTTCTACATGCTCTTGTTTGGCGCTACTGTCCTGACTGGCATTGTTCTGA 239
************************************************************
consensus_11990#0 TTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATT 480
consensus_11990#1 TTGGTGGGATGATACCTTATATTTCTGAGACATTTGCCAGAATCCTGTTCTTGAGCAATT 299
************************************************************
consensus_11990#0 CATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCT 540
consensus_11990#1 CATTGACATTTATGATGGTTTATGTATGGAGCAAGCACAATCCCTTCATTCATATGAGCT 359
************************************************************
consensus_11990#0 TCTTGGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTA 600
consensus_11990#1 TCTTGGGTTTGTTCACCTTTACTGCTGCTTATTTACCTTGGGTCCTTCTGGGGTTCTCTA 419
************************************************************
consensus_11990#0 TTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCATGTGTACT 660
consensus_11990#1 TTCTTGTGGGAAGCAGTACATGGGTTGATTTGCTGGGTATGATTGCTGGGCATGTGTACT 479
************************************************************
consensus_11990#0 ACTTCCTGGAAGATGTATACCCGCGGATGACTGGGAGGCGTCCCCTGAAGACTCCTTCGT 720
consensus_11990#1 ACTTCCTGGAAGATGTACACCCGCGGATGACTGGGAGGCGTCCCCTGAAGACTCCTTCGT 539
***************** ******************************************
consensus_11990#0 TCATCAAGGCGCTATTTGCTGATGACAATGTTGTTGTGGCAAGGCCACCCAATGCTGGGC 780
consensus_11990#1 TCATCAAGGCGCTATTTGCTGACGACAATGNTGTTGTGGCAAGGCCACCCAATGCTGGGC 599
********************** ******* *****************************
consensus_11990#0 TTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTG 840
consensus_11990#1 TTGGCGCTGGAGCAAGGTTTGGTGCTATGGGTGCAGACCCCCAGGCCCAATGATCAATTG 659
************************************************************
consensus_11990#0 CCATTCGAAGGCAGTTACTGATTCGAGAGTTCTTTTTTTTTTTTCATCTGTTCAAATTGC 900
consensus_11990#1 CCATTCGAAGGCAGNTACTGATTCGAGAGNTCTTTTTTTT---TCATCTGGTCAAATTGC 716
************** ************** ********** ******* *********
consensus_11990#0 GAAATTGTACAAGCAATGTTCCCGTGTATTTATACAGGCTATAGATCAGAGAATTATTGT 960
consensus_11990#1 GAAATTGNACAAGCAATGGTCCCGNGTATTTATACAGGCTATAGATCAGANAATTATTGC 776
******* ********** ***** ************************* ********
consensus_11990#0 GCATAAGAAAGCATTTAGTAGTATCTGGGG-CAGCTAAATTTCTTAACTGGACACGAAGG 1019
consensus_11990#1 GCATAANAAAGCATTTAGTAGTATCTGGGGGCAGCTNAATTTCTTA-CTGGACCCGAAGG 835
****** *********************** ***** ********* ****** ******
consensus_11990#0 GTGAAGGAAATGGTTTACGAGTTTCAACCGGCTGGACAATGCCGCCATCCTTGGTTGCAG 1079
consensus_11990#1 GNGAAGGAAAGGGTTTACCAGTTTNAACC------------------------------- 864
* ******** ******* ***** ****
consensus_11990#0 AAACTGATCCTTTTTGCGACGATTGACATCTGACCGGGATACTTTTCAATGTGGTAGTCT 1139
consensus_11990#1 ------------------------------------------------------------
consensus_11990#0 ATTGGTAACGATAACTGTATCCATCGTTGTGATGTTTGTCCCTGCGATTTATGGTGTCAG 1199
consensus_11990#1 ------------------------------------------------------------
consensus_11990#0 AAATGTTAGAATGTTTTATATACTGTTTGGGTTTGAAGAATATTGGTCGAAGATGACCCT 1259
consensus_11990#1 ------------------------------------------------------------
consensus_11990#0 CGAAAAAAAAAAAAAAAAA 1278
consensus_11990#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||