These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1849 fasta sequence [GTCTCCACCCACCTCACTCCACAGTCCACACCACTGCACCGCACTCTCTCTCTCTCCACCGCCATTAACGGTTACTTATCTCTCTAGTACTCCTACTACTGCTAGTGTGCTAGTGGTAGGAGTAGTCTACCAGGACTAGTACTCCACTCTCCGAGAACCAAACAAATCGACAGGAGGCGGCTGGTGTGCGCATGTGACCCGGATCGATCGACAGCGGTCGCCCGCACCGCATTGCCGCTGCTCCCGTTTAGTCCAGCCGCCGCCTCCTCCTCCTCCTCCGCCGCCGCCGCCTGTTCAGGCTCCGATCCAAGGACTGAAGACTACTGCCAGTTTCAGGGAGGAATTCTACTCAGTGGTAGCTTGTGGTTGTAGCTGGTCTTTTGATGAATCTGTTGGTCTCAAAAACATTGTAGAATAGTATTTGTTGGTTCGTTGAACACAATGGGTTCTTCGCCATCCAAAGCCACTGGTGAGGATGCCCTAGTTCTATGCAAGGAGCGAATGCGCCATATCAGGCGAGCTATTGATTCAAGAGATGCACTGTCGGCATCACACCTATCATATACTCAGTCCCTCCGTAGTGTGGGTACTGCATTGCGGCGGTATGCAGAGTCTGAGATCTCACCAGAATCATCACTGTCCATTTCAGAAGCAGATAAGTCACCATCACATTCTTCTATGGCTTCTCCATCACCTTCTCGAGCAGTAGAGAGCACTGGCTCCCCAGTACATCGAGGTAGTCAGCTGACTCCTCCCTCAACAAAGATCCATTACATGAAAGCAGCAGGAACAAAACCTTTGACGTTCACTATTGATCCATCTGCTGTTGACTTTGTGGGGCAAGAATCCCCGGTATCTACCTTTGTGCCACCACCACCACCATTGCCCCCTGAATTATGTACCTCGTGGGACTTCTTCGATTCCAATTATACTTCTGGTAGTGCCACCTCAAATAATGAGAATGGAGTGACATTAAATTTTAGTAGATTGAAGGGCCTGAGAGATTCAAGGGAATCTGAAGCAGTCTCGCTGAGAGAAGAAACAACAAACAGGTCTGATCGAATGCACCCAGAGCTTCCTGGTGATAATGCAGCACCTAAGCAAGAAGCCCAAGCAAAGAAAGGTGGGATGAGTAAGCCAAGTGGATCGGTTGAGGTTACAACTGAAGCTACTACTTCTGGGCAAGTTGGAGCAAAGGTGGAGGAAGATGACATGGAAAAAGAATTGTGCACAGAAGCAGAAGACCCTTCAGAGTTCATCACTCATAGAGCAAAAGATTTTGTGTCAAGCATGAAAGACATTGAAACTCGGTTTGTACGTGCCGCAGAAGCTGGGAATGAGGTTTCCAGAATGCTTGAGACAAAGAAGATCAGACTTGATATATGTGCTAAGATTCCAGGTTCTCCAGGCAAGCCACCTACTGCCCGATTTGTGTCCGCACTTCGAGTCTGCTGCAATCGTGAGAATATTCTCAACCAGGAAACTGCACAGAATATCTCAAAAGTTGTCACTTGGAAGCGTTCTGTATCATCTTTGTCCTCATCATCTAAGAGTCCACTTACAGCAGCAATGATTACTGATGATGTGGGTGATAGTAACAGTGATTTTGTTGAGCAATTCGCCATGGTATCTGGAAGCCACTCGTCTACCTTGGATAGGTTACATGCTTGGGAGAGAAAACTACATGATGAAATCAAGGCTAGTGAACATGTTAGAAAGACTTATGATGAGAAATGTAACCTTCTCCGGCGCCAATTTGCACGAGGTCTAAATGCTCAACTGATTGATAAGACCAGAGCTGTTGTGAAGGATCTTCATTCCAGGGTGTCTGTTGCGATCCAGGCTGTTG] [+] EMBL AK063562 [GTCTCCACCCACCTCACTCCACAGTCCACACCACTGCACCGCACTCTCTCTCTCTCCACCGCCATTAACGGTTACTTATCTCTCTAGTACTCCTACTACTGCTAGTGTGCTAGTGGTAGGAGTAGTCTACCAGGACTAGTACTCCACTCTCCGAGAACCAAACAAATCGACAGGAGGCGGCTGGTGTGCGCATGTGACCCGGATCGATCGACAGCGGTCGCCCGCACCGCATTGCCGCTGCTCCCGTTTAGTCCAGCCGCCGCCTCCTCCTCCTCCTCCGCCGCCGCCGCCTGTTCAGGCTCCGATCCAAGGACTGAAGACTACTGCCAGTTTCAGGGAGGAATTCTACTCAGTGGTAGCTTGTGGTTGTAGCTGGTCTTTTGATGAATCTGTTGGTCTCAAAAACATTGTAGAATAGTATTTGTTGGTTCGTTGAACACAATGGGTTCTTCGCCATCCAAAGCCACTGGTGAGGATGCCCTAGTTCTATGCAAGGAGCGAATGCGCCATATCAGGCGAGCTATTGATTCAAGAGATGCACTGTCGGCATCACACCTATCATATACTCAGTCCCTCCGTAGTGTGGGTACTGCATTGCGGCGGTATGCAGAGTCTGAGATCTCACCAGAATCATCACTGTCCATTTCAGAAGCAGATAAGTCACCATCACATTCTTCTATGGCTTCTCCATCACCTTCTCGAGCAGTAGAGAGCACTGGCTCCCCAGTACATCGAGGTAGTCAGCTGACTCCTCCCTCAACAAAGATCCATTACATGAAAGCAGCAGGAACAAAACCTTTGACGTTCACTATTGATCCATCTGCTGTTGACTTTGTGGGGCAAGAATCCCCGGTATCTACCTTTGTGCCACCACCACCACCATTGCCCCCTGAATTATGTACCTCGTGGGACTTCTTCGATTCCAATTATACTTCTGGTAGTGCCACCTCAAATAATGAGAATGGAGTGACATTAAATTTTAGTAGATTGAAGGGCCTGAGAGATTCAAGGGAATCTGAAGCAGTCTCGCTGAGAGAAGAAACAACAAACAGGTCTGATCGAATGCACCCAGAGCTTCCTGGTGATAATGCAGCACCTAAGCAAGAAGCCCAAGCAAAGAAAGGTGGGATGAGTAAGCCAAGTGGATCGGTTGAGGTTACAACTGAAGCTACTACTTCTGGGCAAGTTGGAGCAAAGGTGGAGGAAGATGACATGGAAAAAGAATTGTGCACAGAAGCAGAAGACCCTTCAGAGTTCATCACTCATAGAGCAAAAGATTTTGTGTCAAGCATGAAAGACATTGAAACTCGGTTTGTACGTGCCGCAGAAGCTGGGAATGAGGTTTCCAGAATGCTTGAGACAAAGAAGATCAGACTTGATATATGTGCTAAGATTCCAGGTTCTCCAGGCAAGCCACCTACTGCCCGATTTGTGTCCGCACTTCGAGTCTGCTGCAATCGTGAGAATATTCTCAACCAGGAAACTGCACAGAATATCTCAAAAGTTGTCACTTGGAAGCGTTCTGTATCATCTTTGTCCTCATCATCTAAGAGTCCACTTACAGCAGCAATGATTACTGATGATGTGGGTGATAGTAACAGTGATTTTGTTGAGCAATTCGCCATGGTATCTGGAAGCCACTCGTCTACCTTGGATAGGTTACATGCTTGGGAGAGAAAACTACATGATGAAATCAAGGCTAGTGAACATGTTAGAAAGACTTATGATGAGAAATGTAACCTTCTCCGGCGCCAATTTGCACGAGGTCTAAATGCTCAACTGATTGATAAGACCAGAGCTGTTGTGAAGGATCTTCATTCCAGGGTGTCTGTTGCGATCCAGGCTGTTG] consensusID : consensus_120#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [TTTTTTTTTTAGTTTGGTTGATCAATCAATGCAATAATATTCTGTAGTGTAAAGCACATGTTCAAGGGAAAAGGGATACTCGAATCAAGAAGCGGGAAGAAGATGATGACGATATTATGATATTATGATTCGTTTCCTTTTTCCCGCTTTGCATCTTTTGGGTACTGGTGGTGGGGGACAGAGGAAACATGAATCTATAGCTCAAGTTAGAAGGCTATGTGACAAATTTAGTGCCTCTGTCCAAAATTGTGTTATTGGTATAATTTGGATTTCACTAGTTTATTTTGAAGATTGTGCTTTACTTAATGTTCTTTCTACTGTGAGTTATTTCTACTTTTGAAAATTATCTGGAAACCTGACCTTTCTTGTTTGTTGTTTTGATTAGATCTGAGGACTGAAGACTACTGCCAGTTTCAGGGAGGATTTCTACTCANTGGAAGCTTGTGTTGTAGCTGGTCTTTTGATGAATCTATTGGTCTCAAATACATTGTAGAATAGTATTTGTTGGTTCGTTGAACTCAATGGGTTCTTCGCCGTCCAAAGCCACTGGTGAGGATGCCCTAGTTCTATGCAAGGAGCGAATGCCCCATATCAAGCGAGCTATTGATTCAAGAGATGCACTGTCGGCATCCACCTATCAATACTCAGCCCTCCCTATGGGGGTACTGCATTGGGCCGTAT] [+] EMBL CA761046 [TTTTTTTTTTAGTTTGGTTGATCAATCAATGCAATAATATTCTGTAGTGTAAAGCACATGTTCAAGGGAAAAGGGATACTCGAATCAAGAAGCGGGAAGAAGATGATGACGATATTATGATATTATGATTCGTTTCCTTTTTCCCGCTTTGCATCTTTTGGGTACTGGTGGTGGGGGACAGAGGAAACATGAATCTATAGCTCAAGTTAGAAGGCTATGTGACAAATTTAGTGCCTCTGTCCAAAATTGTGTTATTGGTATAATTTGGATTTCACTAGTTTATTTTGAAGATTGTGCTTTACTTAATGTTCTTTCTACTGTGAGTTATTTCTACTTTTGAAAATTATCTGGAAACCTGACCTTTCTTGTTTGTTGTTTTGATTAGATCTGAGGACTGAAGACTACTGCCAGTTTCAGGGAGGATTTCTACTCANTGGAAGCTTGTGTTGTAGCTGGTCTTTTGATGAATCTATTGGTCTCAAATACATTGTAGAATAGTATTTGTTGGTTCGTTGAACTCAATGGGTTCTTCGCCGTCCAAAGCCACTGGTGAGGATGCCCTAGTTCTATGCAAGGAGCGAATGCCCCATATCAAGCGAGCTATTGATTCAAGAGATGCACTGTCGGCATCCACCTATCAATACTCAGCCCTCCCTATGGGGGTACTGCATTGGGCCGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_120#0 ------------------------------------------------------------ consensus_120#1 TTTTTTTTTTAGTTTGGTTGATCAATCAATGCAATAATATTCTGTAGTGTAAAGCACATG 60 consensus_120#0 GTCTCCACCCACCTCACTCCACAGTCCACACCACTGCACCGCACTCTCTCTCTCTC-CAC 59 consensus_120#1 TTCAAGGGAAAAGGGATACTCGAATCAAGAAGCGGGAAGAAGATGATGACGATATTATGA 120 ** * * * * ** * * * * * * * * * consensus_120#0 CGCCATTAACGGTTACTTATCTCTC---TAGTACTCCT--ACTACTGCTAGTGTGC--TA 112 consensus_120#1 TATTATGATTCGTTTCCTTTTTCCCGCTTTGCATCTTTTGGGTACTGGTGGTGGGGGACA 180 ** * *** * * * ** * * * * * ***** * *** * * consensus_120#0 GTGGTAGGAGTAGTCTA---CCAGGACTAGTACTCCACTCTCCGAG---AACCAAACAAA 166 consensus_120#1 GAGGAAACATGAATCTATAGCTCAAGTTAGAAGGCTATGTGACAAATTTAGTGCCTCTGT 240 * ** * * * **** * *** * * * * * * * consensus_120#0 TCGACAGGAGGCGGCTGGTGTG---CGCATGTGACCCGGATCGATCGACAGCGGTCGCCC 223 consensus_120#1 CCAAAATTGTGTTATTGGTATAATTTGGATTTCACTAGTTTATTTTGAAGATTGTGCTTT 300 * * * * **** * * ** * ** * * * ** ** consensus_120#0 GCACCGCATTGCCGCTGCTCCCGTTTAGTCCAGCCGCCGCC--TCCTCCTCCTCCTCCGC 281 consensus_120#1 ACTTAATGTTCTTTCTACTGTGAGTTATTTCTACTTTTGAAAATTATCTGGAAACCTGAC 360 * ** ** ** *** * * * * * ** * * consensus_120#0 CGCCGCCGCCTGTT--CAGGCTCCGATCCAAGGACTGAAGACTACTGCCAGTTTCAGGGA 339 consensus_120#1 CTTTCTTGTTTGTTGTTTTGATTAGATCTGAGGACTGAAGACTACTGCCAGTTTCAGGGA 420 * * **** * * **** ****************************** consensus_120#0 GGAATTCTACTCAGTGGTAGCTTGTGGTTGTAGCTGGTCTTTTGATGAATCTGTTGGTCT 399 consensus_120#1 GGATTTCTACTCANTGGAAGCTTGTG-TTGTAGCTGGTCTTTTGATGAATCTATTGGTCT 479 *** ********* *** ******** ************************* ******* consensus_120#0 CAAAAACATTGTAGAATAGTATTTGTTGGTTCGTTGAACACAATGGGTTCTTCGCCATCC 459 consensus_120#1 CAAATACATTGTAGAATAGTATTTGTTGGTTCGTTGAACTCAATGGGTTCTTCGCCGTCC 539 **** ********************************** **************** *** consensus_120#0 AAAGCCACTGGTGAGGATGCCCTAGTTCTATGCAAGGAGCGAATGCGCCATATCAGGCGA 519 consensus_120#1 AAAGCCACTGGTGAGGATGCCCTAGTTCTATGCAAGGAGCGAATGCCCCATATCAAGCGA 599 ********************************************** ******** **** consensus_120#0 GCTATTGATTCAAGAGATGCACTGTCGGCATCACACCTATCATATACTCAGTCCCTCCGT 579 consensus_120#1 GCTATTGATTCAAGAGATGCACTGTCGGCATC-CACCTATCA-ATACTCAG-CCCTCCCT 656 ******************************** ********* ******** ****** * consensus_120#0 AGTGTGGGTACTGCATTGCGGCGGTATGCAGAGTCTGAGATCTCACCAGAATCATCACTG 639 consensus_120#1 A-TGGGGGTACTGCATTG-GGCCGTAT--------------------------------- 681 * ** ************* *** **** consensus_120#0 TCCATTTCAGAAGCAGATAAGTCACCATCACATTCTTCTATGGCTTCTCCATCACCTTCT 699 consensus_120#1 ------------------------------------------------------------ consensus_120#0 CGAGCAGTAGAGAGCACTGGCTCCCCAGTACATCGAGGTAGTCAGCTGACTCCTCCCTCA 759 consensus_120#1 ------------------------------------------------------------ consensus_120#0 ACAAAGATCCATTACATGAAAGCAGCAGGAACAAAACCTTTGACGTTCACTATTGATCCA 819 consensus_120#1 ------------------------------------------------------------ consensus_120#0 TCTGCTGTTGACTTTGTGGGGCAAGAATCCCCGGTATCTACCTTTGTGCCACCACCACCA 879 consensus_120#1 ------------------------------------------------------------ consensus_120#0 CCATTGCCCCCTGAATTATGTACCTCGTGGGACTTCTTCGATTCCAATTATACTTCTGGT 939 consensus_120#1 ------------------------------------------------------------ consensus_120#0 AGTGCCACCTCAAATAATGAGAATGGAGTGACATTAAATTTTAGTAGATTGAAGGGCCTG 999 consensus_120#1 ------------------------------------------------------------ consensus_120#0 AGAGATTCAAGGGAATCTGAAGCAGTCTCGCTGAGAGAAGAAACAACAAACAGGTCTGAT 1059 consensus_120#1 ------------------------------------------------------------ consensus_120#0 CGAATGCACCCAGAGCTTCCTGGTGATAATGCAGCACCTAAGCAAGAAGCCCAAGCAAAG 1119 consensus_120#1 ------------------------------------------------------------ consensus_120#0 AAAGGTGGGATGAGTAAGCCAAGTGGATCGGTTGAGGTTACAACTGAAGCTACTACTTCT 1179 consensus_120#1 ------------------------------------------------------------ consensus_120#0 GGGCAAGTTGGAGCAAAGGTGGAGGAAGATGACATGGAAAAAGAATTGTGCACAGAAGCA 1239 consensus_120#1 ------------------------------------------------------------ consensus_120#0 GAAGACCCTTCAGAGTTCATCACTCATAGAGCAAAAGATTTTGTGTCAAGCATGAAAGAC 1299 consensus_120#1 ------------------------------------------------------------ consensus_120#0 ATTGAAACTCGGTTTGTACGTGCCGCAGAAGCTGGGAATGAGGTTTCCAGAATGCTTGAG 1359 consensus_120#1 ------------------------------------------------------------ consensus_120#0 ACAAAGAAGATCAGACTTGATATATGTGCTAAGATTCCAGGTTCTCCAGGCAAGCCACCT 1419 consensus_120#1 ------------------------------------------------------------ consensus_120#0 ACTGCCCGATTTGTGTCCGCACTTCGAGTCTGCTGCAATCGTGAGAATATTCTCAACCAG 1479 consensus_120#1 ------------------------------------------------------------ consensus_120#0 GAAACTGCACAGAATATCTCAAAAGTTGTCACTTGGAAGCGTTCTGTATCATCTTTGTCC 1539 consensus_120#1 ------------------------------------------------------------ consensus_120#0 TCATCATCTAAGAGTCCACTTACAGCAGCAATGATTACTGATGATGTGGGTGATAGTAAC 1599 consensus_120#1 ------------------------------------------------------------ consensus_120#0 AGTGATTTTGTTGAGCAATTCGCCATGGTATCTGGAAGCCACTCGTCTACCTTGGATAGG 1659 consensus_120#1 ------------------------------------------------------------ consensus_120#0 TTACATGCTTGGGAGAGAAAACTACATGATGAAATCAAGGCTAGTGAACATGTTAGAAAG 1719 consensus_120#1 ------------------------------------------------------------ consensus_120#0 ACTTATGATGAGAAATGTAACCTTCTCCGGCGCCAATTTGCACGAGGTCTAAATGCTCAA 1779 consensus_120#1 ------------------------------------------------------------ consensus_120#0 CTGATTGATAAGACCAGAGCTGTTGTGAAGGATCTTCATTCCAGGGTGTCTGTTGCGATC 1839 consensus_120#1 ------------------------------------------------------------ consensus_120#0 CAGGCTGTTG 1849 consensus_120#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||