These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12001#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 692 fasta sequence [CGAGAGCTCTCTCACCG-TCACT-GATACA-CCGAGACGAGCTAG-A-AATTAAC-T-GCA-TTT--CGATCGTCGACATGGCTTCC-AAGAACT-CCA-TGTCC-TCCTC-GCTTC-TCTTCC-TCA-TGGCGCTGC-TGCTCTCATGGAG-CTCCATCAGCAGCGCAGCT-CGC-TACCTGGAGGAGGAGGCCGCGCCCAAGGAGGAGTACCCGGAGCTT-CCGAAGCCCGAGCTGCCGCCGCACCTCGCCGTGCCGGAGCTGCCAAAGCCCG-AGCTGCCGCATGGCGCCGCCGTGCCGGAGTTT-CCGAAGGTGCCT-GAACTGCCACACCCCGAGGTG-CCGGAA-TTGCCGAAG-CCTGAATTGCCT-GAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGAGCGATCAGATAGAGCATCCGCGTATAGCGCGCGCGCCATTTTATCTGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCTGTATTCACTATCTACACTGGCTTGTATCAGTACATGATTACAGGTTAACCATGGAGTTGTGTTTATATTCATGTACAAATCAATATAATGGAGAGTTTTCTTTGAGTCAAAAAAAAAAA] [+] EMBL AA754343 [CGAGAGCTCTCTCACCGBCCACTGGATACACCCGAGACGAGCTAG AVATTTAAC TCRCA TTTTCCGAACGTCGACATGGCTTCC AAGAACT CCA TGTCC TCCTC GCTTC TCTCTC TCA TGGCGCTGC TGCTCTCATRGAG CTCCATCAGCAGCGCA CT CGCATACCTGGAGGAGGAGGCCGCGCCCAAGGAGGAGTACCCGGAGCTT CCGAAGCCCGAGCTGCCGCCGCACCTCGCCGTGCCGGAGCTGCCAAAGCCCG AGCTGCCGCAT GCGCCGCCGTGCCGGAGTTT CCGAA GTGCCTSGAAC ] [+] EMBL AK062673 [ CTCTCACCG TCACT GATACA CCGAGACGAGCTAG A AATTAAC T GCA TTT CGATCGTCGACATGGCTTCC AAGAACT CCA TGTCC TCCTC GCTTC TCTTCC TCA TGGCGCTGC TGCTCTCATGGAG CTCCATCAGCAGCGCAGCT CGC TACCTGGAGGAGGAGGCCGCGCCCAAGGAGGAGTACCCGGAGCTT CCGAAGCCCGAGCTGCCGCCGCACCTCGCCGTGCCGGAGCTGCCAAAGCCCG AGCTGCCGCATGGCGCCGCCGTGCCGGAGTTT CCGAAGGTGCCT GAACTGCCACACCCCGAGGTG CCGGAA TTGCCGAAG CCTGAATTGCCT GAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGAGCGATCAGATAGAGCATCCGCGTATAGCGCGCGCGCCATTTTATCTGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCTGTATTCACTATCTACACTGGCTTGTATCAGTACATGATTACAGGTTAACCATGGAGTTGTGTTTATATTCATGTACAAATCAATATAATGGAGA ] [+] EMBL OSS15726A [ CACCG TCACT GATACA CCGAGACGAGCTAG A AATTAAC T GCA TTT CGATCGTNGACATNGCTTCC AAGAACT CCA TNTCC TCCTC GNTTC TCTTCC TCA TNGCGCTGC TGCTCTCATGGAG CTCCATCAGCAGCGCAG T CGC TACCTGGAGGAGGAGGCCGCGCCCAAGGAGGAGTACCCGGAGCTT CCGAAGNCCGAGCTGCCGCNGCACCTNGTCGTGCCGGAGCTGCCAAAGCCC ] [+] EMBL AU031253 [ ctTAGNA AATTAACTT CCATTTT CGACCNTCGACATGGTTTCCAAAGAACTCCCATTGTCCTTCCTCGGCTTCTTCTTCCTTCATTGGCGCTGCTTNCTCTCATGGAGNTTCCATCAGCAGNGCAGCTCCGC TACCTGGAGGAGGAGGCCGCGCCCAAGGANGAGTACCCGNAGCTTCCCGAAGCCCGAGCTGCCGCCGCACCTCGCCGTGCCGGAGCTGCCAAAGCCCGAAGCTGCCNCATGGCNCCGCCGTGCCGGAGTTTCCCGAAGGTGCCT GAACTGCCACACCCCGAGGTGCCCGGAA TTGCCGAAG CCTGAATTGCCT GAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGAGCGATCAGATAGAGCATCCGCGTATAGCGCGCGCGCCATTTTATCTGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCTGTATTCACTATCTACACTGGCTTGTATCAGTACATGATTACAGGTTAACCATGGAGTTGTGTTTATATTCATGTACAAATCAATATAATGGAGAGTTTTCTTTGAGTCTGCAAAAAAA ] [+] EMBL AU032880 [ GCCAAATGGCGCCGCCTTGCCGGANTTT CCGAAGGTGCCT GAACTGCCANACCCCGAGGTN CCGGAATTTGCCGAAGCCCTGAATTGCCTGGAGCACCTTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGAGCGATCAGATAGAGCATCCGCGTATAGCGCGCGCGCCATTTTATCTGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCTGTATTCACTATCTACACTGGCTTGTATCAGTACATGATTACAGGTTAACCATGGAGTTGTGTTTATATTCATGTACAAATCAATATAATGGAGAGTTTTCTTTGAGTCAAAAAAAAAAA] [+] EMBL AU164801 [ CGAGGTG CCGGAA TTGCCGAAG CCTGAATTGCCT GAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCTGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGAGCGATCAGATAGAGCATCCGCGTATAGCGCGCGCGCCATTTTATCTGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCTGTATTCACTATCTACACTGGCTTGTATCAGTACATGATTACAGGTTAACCATGGAGTTGTGTTTATATTCATGTACAAATCAATATAATGGAGAGTTTTCTTTGA AAAAAAAAAA ] [+] EMBL AU164804 [ nGAGGTG CCGGAA TTGCCGAAG CCTGAATTGCCT GAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCTGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGNCAAGCCATGATGAACGAGCGATCAGATAGAGCATCCGCGTATAGCGCGCGCGCCATTTTATCTGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCTGTATTCACTATCTACACTGGCTTGTATCAGTANATGATTACAGGTTAACCATGGAGTTGTGTTTATATTCATGTACAAATCAATATAATGGAGAGTTTTCTTTGA AAAAAAAAAA ] consensusID : consensus_12001#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [AGCATTTCGACGACATGGTTTCCAAGAACTTCATGTCCTCCTCGCTTCTCTTCCTCATGGCGCTGCTGCTCTCATGGAGCTCTATCAGCAGCGCAGCTCGCTACCTGGAGGAGGAGGCTGCGCCCAAGGAGGAGTACCCGGAGCTGCCAAAGCCTGAGCTGCCGCATGGCGCCGCCGTGCCGGAGTTTCCGAAGGTGCCTGAACTGCCGCACCCGGAAGTGCCGGAGCTGCCGAAGGTGCCTGAACTGCCGCACCCCAAGGTGCCGGAATTGCCGAAGGTGCCGGAGTTGCCGAAGCCTGAATTGCCTGAGCACCCTGCTGTGCCGGAGCTCCCGAAGCCCGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGATCACTCGATCAGATATACAGCATCCGCGTCTAGCGCGCGCGCCATTTTATCTATACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCTGTATTCACTATCTACACTAGCTTGTATCAGTACATGATTACAGGTTTACCATGGAGTTGTGTTTATATTC] [+] EMBL CA756118 [AGCATTTCGACGACATGGTTTCCAAGAACTTCATGTCCTCCTCGCTTCTCTTCCTCATGGCGCTGCTGCTCTCATGGAGCTCTATCAGCAGCGCAGCTCGCTACCTGGAGGAGGAGGCTGCGCCCAAGGAGGAGTACCCGGAGCTGCCAAAGCCTGAGCTGCCGCATGGCGCCGCCGTGCCGGAGTTTCCGAAGGTGCCTGAACTGCCGCACCCGGAAGTGCCGGAGCTGCCGAAGGTGCCTGAACTGCCGCACCCCAAGGTGCCGGAATTGCCGAAGGTGCCGGAGTTGCCGAAGCCTGAATTGCCTGAGCACCCTGCTGTGCCGGAGCTCCCGAAGCCCGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGATCACTCGATCAGATATACAGCATCCGCGTCTAGCGCGCGCGCCATTTTATCTATACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCTGTATTCACTATCTACACTAGCTTGTATCAGTACATGATTACAGGTTTACCATGGAGTTGTGTTTATATTC] consensusID : consensus_12001#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [CACCGAGACGAGCTAGAAATTAACTGCATTTCGAACGTCGACATGGCTTCCAAGAACTCCATGTCCTCCTCGCTTCTCTTCCTCATGGCGCTGCTGCTCTCATGGAGCTCCATCAGCAGCGCAGCTCGCTACCTGGAGGAGGAGGCCGCGCCCAAGGAGGAGTACCCGGAGCTTCCGAAGCCCGAGCTGCCGCCGCACCTCGCCGTGCCGGAGCTGCCAAAGCCCGAGCTGCCGCATGGCGCCGCCGTGCCGGAGTTTCCGAAGGTGCCTGAACTGCCACACCCCGAGGTGCCGGAATTGCCGAAGCCTGAATTGCCTGAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGAGCGATCAGATAGAGCATCCGCGTATAGCGCGCGCGCCATTTTATCTGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGGTCACTGTGTACGTATTCTGTAAAAAAAAAAAAA] [+] EMBL CA758647 [CACCGAGACGAGCTAGAAATTAACTGCATTTCGAACGTCGACATGGCTTCCAAGAACTCCATGTCCTCCTCGCTTCTCTTCCTCATGGCGCTGCTGCTCTCATGGAGCTCCATCAGCAGCGCAGCTCGCTACCTGGAGGAGGAGGCCGCGCCCAAGGAGGAGTACCCGGAGCTTCCGAAGCCCGAGCTGCCGCCGCACCTCGCCGTGCCGGAGCTGCCAAAGCCCGAGCTGCCGCATGGCGCCGCCGTGCCGGAGTTTCCGAAGGTGCCTGAACTGCCACACCCCGAGGTGCCGGAATTGCCGAAGCCTGAATTGCCTGAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGGTCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCATGATGAACGAGCGATCAGATAGAGCATCCGCGTATAGCGCGCGCGCCATTTTATCTGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGGTCACTGTGTACGTATTCTGTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12001#0 CGAGAGCTCTCTCACCGTCACTGATACACCGAGACGAGCTAGAAATTAACTGCATTTCGA 60 consensus_12001#2 --------------------------CACCGAGACGAGCTAGAAATTAACTGCATTTCGA 34 consensus_12001#1 --------------------------------------------------AGCATTTCGA 10 ********* consensus_12001#0 TCGTCGACATGGCTTCCAAGAACTCCATGTCCTCCTCGCTTCTCTTCCTCATGGCGCTGC 120 consensus_12001#2 ACGTCGACATGGCTTCCAAGAACTCCATGTCCTCCTCGCTTCTCTTCCTCATGGCGCTGC 94 consensus_12001#1 ----CGACATGGTTTCCAAGAACTTCATGTCCTCCTCGCTTCTCTTCCTCATGGCGCTGC 66 ******** *********** *********************************** consensus_12001#0 TGCTCTCATGGAGCTCCATCAGCAGCGCAGCTCGCTACCTGGAGGAGGAGGCCGCGCCCA 180 consensus_12001#2 TGCTCTCATGGAGCTCCATCAGCAGCGCAGCTCGCTACCTGGAGGAGGAGGCCGCGCCCA 154 consensus_12001#1 TGCTCTCATGGAGCTCTATCAGCAGCGCAGCTCGCTACCTGGAGGAGGAGGCTGCGCCCA 126 **************** *********************************** ******* consensus_12001#0 AGGAGGAGTACCCGGAGCTTCCGAAGCCCGAGCTGCCGCCGCACCTCGCCGTGCCGGAGC 240 consensus_12001#2 AGGAGGAGTACCCGGAGCTTCCGAAGCCCGAGCTGCCGCCGCACCTCGCCGTGCCGGAGC 214 consensus_12001#1 AGGAGGAGTACCCGGAGCTGCCAAAGCCTGAGCTGCCGCATGGCGCCGCCGTGCCGGAGT 186 ******************* ** ***** ********** * ************* consensus_12001#0 TGCCAAAG---CCCGAGCTGCCGCATGGCGCCGCCGTGCCGGAGTTTCCGAAGGTGCCTG 297 consensus_12001#2 TGCCAAAG---CCCGAGCTGCCGCATGGCGCCGCCGTGCCGGAGTTTCCGAAGGTGCCTG 271 consensus_12001#1 TTCCGAAGGTGCCTGAACTGCCGCA---CCCGGAAGTGCCGGAGCTGCCGAAGGTGCCTG 243 * ** *** ** ** ******** * * * ********* * ************* consensus_12001#0 AACTGCCACACCCCGAGGTGCCGGAATTGCCGAAG------------------CCTGAAT 339 consensus_12001#2 AACTGCCACACCCCGAGGTGCCGGAATTGCCGAAG------------------CCTGAAT 313 consensus_12001#1 AACTGCCGCACCCCAAGGTGCCGGAATTGCCGAAGGTGCCGGAGTTGCCGAAGCCTGAAT 303 ******* ****** ******************** ******* consensus_12001#0 TGCCTGAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGG 399 consensus_12001#2 TGCCTGAGCACCCTGCGGTGCCGGAGCTCCCGAAGCCTGAGCTGCCATCGTTGCCCAAGG 373 consensus_12001#1 TGCCTGAGCACCCTGCTGTGCCGGAGCTCCCGAAGCCCGAGCTGCCATCGTTGCCCAAGG 363 **************** ******************** ********************** consensus_12001#0 TCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCAT 459 consensus_12001#2 TCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCAT 433 consensus_12001#1 TCGAGCTGCCGCCATTGCCCAAGCCTGAGTTCCACTTCCCGGAGCCGGAGGCCAAGCCAT 423 ************************************************************ consensus_12001#0 GATGAACGAGC----GATCAGATAGA--GCATCCGCGTATAGCGCGCGCGCCATTTTATC 513 consensus_12001#2 GATGAACGAGC----GATCAGATAGA--GCATCCGCGTATAGCGCGCGCGCCATTTTATC 487 consensus_12001#1 GATGAACGATCACTCGATCAGATATACAGCATCCGCGTCTAGCGCGCGCGCCATTTTATC 483 ********* * ********* * ********** ********************* consensus_12001#0 TGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCT 573 consensus_12001#2 TGTACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGGTCACTGTGTACGTATTCT 547 consensus_12001#1 TATACTGAATAATACTTGTGTGTGGTTTTTATTTGCGATGGTTCACTGTTTACGTATTCT 543 * *************************************** ******* ********** consensus_12001#0 GTATTCACTATCTACACTGGCTTGTATCAGTACATGATTACAGGTTAACCATGGAGTTGT 633 consensus_12001#2 GTAAAAAAAAAAAAA--------------------------------------------- 562 consensus_12001#1 GTATTCACTATCTACACTAGCTTGTATCAGTACATGATTACAGGTTTACCATGGAGTTGT 603 *** * * * consensus_12001#0 GTTTATATTCATGTACAAATCAATATAATGGAGAGTTTTCTTTGAGTCAAAAAAAAAAA 692 consensus_12001#2 ----------------------------------------------------------- consensus_12001#1 GTTTATATTC------------------------------------------------- 613 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||