cluster # 12010

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Oryza sativa
cluster # 12010 cluster # 12010 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12010#0 length = 1921 sequences # 6

consensus_12010#1 length = 1282 sequences # 3

consensusID : consensus_12010#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1921
fasta sequence

                              [CTTGCATCCCTGAACTGTTCTACAATATAGATCTCATGGATGAGATGGCTGCACGAACATGGTTGTGGTTGCTACTGTCCCCTCTCATCCTCCTACTGCTGCACTATGCTCTGGCCCTGCTAACTGCACGCCGAGCGAGGAAGAACCCCTTGCCACCTTCACCTCCAGCCTTGCCATTCATCGGGCACCTCCACCTCATCGGCGCCCTCCCTCACGTCTCCCTCTGCTGCCTCGCCACGAAGCATGCGCCCGACCTCATGTTCCTCCGACTTGGCACGTCGTTGCCGGTGCTCGTCGCTTCCTCGCCCTGTGCCGCCGAGGCCATCCTGCGCACGCATGACGACGTGTTCGCGTCGCGGCCACGCACCGTTCTAGCGGATATCATCTTCTACGGCTCGCGCGACATTGGCTTCGCACCGTATGGCGAGGATTGGCGGCAGGCAAGGAAGCTTGTGAACACGCACCTGCTGAGTGTCAACAAGGTGCAGTCGCTATGGCTTGCCCGTGAGGAGGAGGTGAAAATTGTGATGGAGAAGATAAGCAAAGCGGCATTCGCACGTGAAGCAGTGGATATAGGCCAGATTCTTTGCTCATTCACAAACGATCTCGCATGCCGTGTTGTGTCAAGGAAGTTAGTCGGGGATGACAGGCAGAAAAAGCTCCTCCAAGAGTTGGTTAATAAGACAATAAAGCTGCTTTCTATCTTCAACGTGGAGGAGTACTTTTCAATTTTAGCTCGGATTGGCGTGATTGGGAAGGTGATGTGCGCAAGAGCTGAGAGGTTGAAAAAGAAGTGGGACATGCTGCTGAAAAAGCTGATCGCCGACCATGAGAGCAAGTGCGATTCATACTTAGTATGTGGCCGTAACAAAGATGACTTTGTGGACATTTTACTGTCTGTTAGGAAGGAGTATGGTCTCACCGAAGAACATGTCAAAGCTATTCTTGAGGACGTCTTTATTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACCTTTGCTGAGCTCATGCGGAAGCCACACATGCTCAAGAAGGTGCAGGATGAGGTGAGGGCTTGCATTCCCAATGGACAAGCAATTGTTAGTGAAGTTCAAGTTAACAACATGACTTACCTGAGAGCAGTTGTGAAGGAGGTACTAAGGCTGCACCCTGTGGCACCACTCCTTGCGACACACGTCTCCATGGCTGACTGCAACATCAATGGGTATATGATCCCTTCAGGGATGCGTGTCTTGGTCAACGCCTGGGCCATTGGTAGGGACGAACGCTTCTGGTATGATCCAGAGAAGTTCATGCCAGAAAGGTTTGTTGAAAGTGTGAATGGTTCTGCCACTGCGTCAGTCAACTTTTGGGTGAATAACTATCAATACTTGCCATTTGGTTCTGGAAGGAGAATGTGCCTCGGGATGAACTTTGCCATGGCAGTTATCGAGATCACACTAGCGAACCTTCTCTGGAAATTTGATTGGGCGCTGCCTGCACATGCAATGGAGGTTGATATGTCAGAAGAGTTTGGGTTGTCGGTGCGTCTGAAAGAAAAGCTATTGTTGGTTCCAAAGCAACATGTGTAGCTGCTAGCAAGTACTCGAAGGAATTGAATTGTCCAACTTTAATGTGAGAAAGTCTACCATGACCTATGGGGGTCTACACTAATGTTAACCTCTGGACAAAGTCATTATACACCGTTTCTCTATGCTTCAACCCTTGGAGGATCCAATTCTTATCACAAAATATGTGTGTAACAAGTAATAATTTTTGCATGGTTGTCGATGCTTAATCTGTTTGTTTGTTTACTTTGTGTATGCAGTGGTGTATGATCAGTTTGGTTAACTGCCTAGCCATTTGTAATAATTAATGTTTCANGCTAATACCTTCATA-ATAATAGAATATTGATTGGTGACATAATAAAAAAAAA]

[+] EMBL AK066010             [CTTGCATCCCTGAACTGTTCTACAATATAGATCTCATGGATGAGATGGCTGCACGAACATGGTTGTGGTTGCTACTGTCCCCTCTCATCCTCCTACTGCTGCACTATGCTCTGGCCCTGCTAACTGCACGCCGAGCGAGGAAGAACCCCTTGCCACCTTCACCTCCAGCCTTGCCATTCATCGGGCACCTCCACCTCATCGGCGCCCTCCCTCACGTCTCCCTCTGCTGCCTCGCCACGAAGCATGCGCCCGACCTCATGTTCCTCCGACTTGGCACGTCGTTGCCGGTGCTCGTCGCTTCCTCGCCCTGTGCCGCCGAGGCCATCCTGCGCACGCATGACGACGTGTTCGCGTCGCGGCCACGCACCGTTCTAGCGGATATCATCTTCTACGGCTCGCGCGACATTGGCTTCGCACCGTATGGCGAGGATTGGCGGCAGGCAAGGAAGCTTGTGAACACGCACCTGCTGAGTGTCAACAAGGTGCAGTCGCTATGGCTTGCCCGTGAGGAGGAGGTGAAAATTGTGATGGAGAAGATAAGCAAAGCGGCATTCGCACGTGAAGCAGTGGATATAGGCCAGATTCTTTGCTCATTCACAAACGATCTCGCATGCCGTGTTGTGTCAAGGAAGTTAGTCGGGGATGACAGGCAGAAAAAGCTCCTCCAAGAGTTGGTTAATAAGACAATAAAGCTGCTTTCTATCTTCAACGTGGAGGAGTACTTTTCAATTTTAGCTCGGATTGGCGTGATTGGGAAGGTGATGTGCGCAAGAGCTGAGAGGTTGAAAAAGAAGTGGGACATGCTGCTGAAAAAGCTGATCGCCGACCATGAGAGCAAGTGCGATTCATACTTAGTATGTGGCCGTAACAAAGATGACTTTGTGGACATTTTACTGTCTGTTAGGAAGGAGTATGGTCTCACCGAAGAACATGTCAAAGCTATTCTTGAGGACGTCTTTATTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACCTTTGCTGAGCTCATGCGGAAGCCACACATGCTCAAGAAGGTGCAGGATGAGGTGAGGGCTTGCATTCCCAATGGACAAGCAATTGTTAGTGAAGTTCAAGTTAACAACATGACTTACCTGAGAGCAGTTGTGAAGGAGGTACTAAGGCTGCACCCTGTGGCACCACTCCTTGCGACACACGTCTCCATGGCTGACTGCAACATCAATGGGTATATGATCCCTTCAGGGATGCGTGTCTTGGTCAACGCCTGGGCCATTGGTAGGGACGAACGCTTCTGGTATGATCCAGAGAAGTTCATGCCAGAAAGGTTTGTTGAAAGTGTGAATGGTTCTGCCACTGCGTCAGTCAACTTTTGGGTGAATAACTATCAATACTTGCCATTTGGTTCTGGAAGGAGAATGTGCCTCGGGATGAACTTTGCCATGGCAGTTATCGAGATCACACTAGCGAACCTTCTCTGGAAATTTGATTGGGCGCTGCCTGCACATGCAATGGAGGTTGATATGTCAGAAGAGTTTGGGTTGTCGGTGCGTCTGAAAGAAAAGCTATTGTTGGTTCCAAAGCAACATGTGTAGCTGCTAGCAAGTACTCGAAGGAATTGAATTGTCCAACTTTAATGTGAGAAAGTCTACCATGACCTATGGGGGTCTACACTAATGTTAACCTCTGGACAAAGTCATTATACACCGTTTCTCTATGCTTCAACCCTTGGAGGATCCAATTCTTATCACAAAATATGTGTGTAACAAGTAATAATT                                                                                                                                                                  ]
[+] EMBL CB637562             [                  TCTACAATATAGATCTCATGGATGAGATGGCTGCACGAACATGGTTGTGGTTGCTACTGTCCCCTCTCATCCTCCTACTGCTGCACTATGCTCTGGCCCTGCTAACTGCACGCCGAGCGAGGAAGAACCCCTTGCCACCTTCACCTCCAGCCTTGCCATTCATCGGGCACCTCCACCTCATCGGCGCCCTCCCTCACGTCTCCCTCTGCTGCCTCGCCACGAAGCATGCGCCCGACCTCATGTTCCTCCGACTTGGCACGTCGTTGCCGGTGCTCGTCGCTTCCTCGCCCTGTGCCGCCGAGGCCATCCTGCGCACGCATGACGACGTGTTCGCGTCGCGGCCACGCACCGTTCTAGCGGATATCATCTTCTACGGCTCGCGCGACATTGGCTTCGCACCGTATGGCGAGGATTGGCGGCAGGCAAGGAAGCTTGTGAACACGCACCTGCTGAGTGTCAACAAGGTGCAGTCGCTATGGCTTGCCCGTGAGGAGGAGGTGAAAATTGTGATGGAGAAGATAAGCAAAGCGGCATTCGCACGTGAAGCAATGGATATAGGCCAGATTCTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB640129             [                                                CTGCACGAACATGGTTGTGGTTGCTACTGTCCCCTCTCATCCTCCTACTGCTGCACTATGCTCTGGCCCTGCTAACTGCACGCCGAGCGAGGAAGAACCCCTTGCCACCTTCACCTCCAGCCTTGCCATTCATCGGGCACCTCCACCTCATCGGCGCCCTCCCTCACGTCTTTTTTTTCTGCCTCGCCACGAAGCATGCGCCCGACCTCATGTTCCTCCGACTTGGCACGTCGTTGCCGGTGCTCGTCGCTTCCTCGCCCTGTGCCGCCGAGGCCATCCTGCGCACGCATGACGACGTGTTCGCGTCGCGGCCACGCACCGTTCTAGCGGATATCATCTTCTACAGCTCGCGCGACATTGGCTTCGCACCGTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK060739             [                                                                                                                                                           CCTTCACCTCCAGCCTTGCCATTCATCGGGCACCTCCACCTCATCGGCGCCCTCCCTCACGTCTCCCTCTGCTGCCTCGCCACGAAGCATGCGCCCGACCTCATGTTCCTCCGACTTGGCACGTCGTTGCCGGTGCTCGTCGCTTCCTCGCCCTGTGCCGCCGAGGCCATCCTGCGCACGCATGGCGACGTGTTCGCGTCGCGGCCACGCACCGTTCTAGCGGATATCATCTTCTACGGCTCGCGCGACATTGGCTTCGCACCGTATGGCGAGGATTGGCGGCAGGCAAGGAAGCTTGTGAACACGCACCTGCTGAGTGTCAACAAGGTGCAGTCGCTATGGCTTGCCCGTGAGGAGGAGGTGAAAATTGTGATGGAGAAGATAAGCAAAGCGGCATTCGCACGTGAAGCAGTGGATATAGGCCAGATTCTTTGCTCATTCACAAACGATCTCGCATGCCGTGTTGTGTCAAGGAAGTTAGTCGGGGATGACAGGCAGAAAAAGCTCCTCCAAGAGTTGGTTAATAAGACAATAAAGCTGCTTTCTATCTTCAACGTGGAGGAGTACTTTTCAATTTTAGCTCGGATTGGCGTGATTGGGAAGGTGATGTGCGCAAGAGCTGAGAGGTTGAAAAAGAAGTGGGACATGCTGCTGAAAAAGCTGATCGCCGACCATGAGAGCAAGTGCGATTCATACTTAGTATGTGGCCGTAACAAAGATGACTTTGTGGACATTTTACTGTCTGTTAGGAAGGAGTATGGTCTCACCGAAGAACATGTCAAAGCTATTCTTGAGGACGTCTTTATTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACCTTTGCTGAGCTCATGCGGAAGCCACACATGCTCAAGAAGGTGCAGGATGAGGTGAGGGCTTGCATTCCCAATGGACAAGCAATTGTTAGTGAAGTTCAAGTTAACAACATGACTTACCTGAGAGCAGTTGTGAAGGAGGTACTAAGGCTGCACCCTGTGGCACCACTCCTTGCGACACACGTCTCCATGGCTGACTGCAACATCAATGGGTATATGATCCCTTCAGGGATGCGTGTCTTGGTCAACGCCTGGGCCATTGGTAGGGACGAACGCTTCTGGTATGATCCAGAGAAGTTCATGCCAGAAAGGTTTGTTGAAAGTGTGAATGGTTCTGCCACTGCGTCAGTCAACTTTTGGGTGAATAACTATCAATACTTGCCATTTGGTTCTGGAAGGAGAATGTGCCTCGGGATGAACTTTGCCATGGCAGTTATCGAGATCACACTAGCGAACCTTCTCTGGAAATTTGATTGGGCGCTGCCTGCACATGCAATGGAGGTTGATATGTCAGAAGAGTTTGGGTTGTCGGTGCGTCTGAAAGAAAAGCTATTGTTGGTTCCAAAGCAACATGTGTAGCTGCTAGCAAGTACTCGAAGGAATTGAATTGTCCAACTTTAATGTGAGAAAGTCTACCATGACCTATGGGGGTCTACACTAATGTTAACCTCTGGACAAAGTCATTATACACCGTTTCTCTATGCTTCAACCCTTGGAGGATCCAATTCTTATCACAAAATA                                                                                                                                                                                       ]
[-] EMBL CB637563             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGAGAAGTTCATGCCAGAAAGGTTTGTTGAAAGTGTGAATGGTTCTGCCACTGCGTCAGTCAACTTTTGGGTGAATAACTATCAATACTTGCCATTTGGTTCTGGAAGGAGAATGTGCCTCGGGATGAACTTTGCCATGGCAGTTATCGAGATCACACTAGCGAACCTTCTCTGGAAATTTGATTGGGCGCTGCCTGCACATGCAATGGAGGTTGATATGTCAGAAGAGTTTGGGTTGTCGGTGCGTCTGAAAGAAAAGCTATTGTTGGTTCCAAAGCAACATGTGTAGCTGCTAGCAAGTACTCGAAGGAATTGAATTGTCCAACTTTAATGTGAGAAAGTCTACCATGACCTATGGGGGTCTACACTAATGTTAACCTCTGGACAAAGTCATTATACACCGTTTCTCTATGCTTCAACCCTTGGAGGATCCAATTCTTATCACAAAATATGTGTGTAACAAGTAATAATTTTTGCATGGTTGTCGATGCTTAATCTGTTTGTTTGTTTACTTTGTGTATGCAGTGGTGTATGATCAGTTTGGTTAACTGCCTAGCCATTTGTAATAATTAATGTTTCANGCTAATACCTTCATA ATAATAGAATATTGATTGGTGACA             ]
[+] EMBL AT003553             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATACACCGTTTCTCTATGCTTCAACCCTTGGAGGATCCAATTCTTATCACAAAATATGTGTGTAACAAGTAATAATTTTTGCATGGTTGTCGATGCTTAATCTGTTTGTTTGTTTACTTTGTGTATGCAGTGGTGTATGATCAGTTTGGTTAACTGCCTAGCCATTTGTAATAATTAATGTTTCA GCTAATNCCTTCATATATTTTAGAATATTGATTGGTGACATAATAAAAAAAAA]




>consensus_12010#0
CTTGCATCCCTGAACTGTTCTACAATATAGATCTCATGGATGAGATGGCTGCACGAACAT
GGTTGTGGTTGCTACTGTCCCCTCTCATCCTCCTACTGCTGCACTATGCTCTGGCCCTGC
TAACTGCACGCCGAGCGAGGAAGAACCCCTTGCCACCTTCACCTCCAGCCTTGCCATTCA
TCGGGCACCTCCACCTCATCGGCGCCCTCCCTCACGTCTCCCTCTGCTGCCTCGCCACGA
AGCATGCGCCCGACCTCATGTTCCTCCGACTTGGCACGTCGTTGCCGGTGCTCGTCGCTT
CCTCGCCCTGTGCCGCCGAGGCCATCCTGCGCACGCATGACGACGTGTTCGCGTCGCGGC
CACGCACCGTTCTAGCGGATATCATCTTCTACGGCTCGCGCGACATTGGCTTCGCACCGT
ATGGCGAGGATTGGCGGCAGGCAAGGAAGCTTGTGAACACGCACCTGCTGAGTGTCAACA
AGGTGCAGTCGCTATGGCTTGCCCGTGAGGAGGAGGTGAAAATTGTGATGGAGAAGATAA
GCAAAGCGGCATTCGCACGTGAAGCAGTGGATATAGGCCAGATTCTTTGCTCATTCACAA
ACGATCTCGCATGCCGTGTTGTGTCAAGGAAGTTAGTCGGGGATGACAGGCAGAAAAAGC
TCCTCCAAGAGTTGGTTAATAAGACAATAAAGCTGCTTTCTATCTTCAACGTGGAGGAGT
ACTTTTCAATTTTAGCTCGGATTGGCGTGATTGGGAAGGTGATGTGCGCAAGAGCTGAGA
GGTTGAAAAAGAAGTGGGACATGCTGCTGAAAAAGCTGATCGCCGACCATGAGAGCAAGT
GCGATTCATACTTAGTATGTGGCCGTAACAAAGATGACTTTGTGGACATTTTACTGTCTG
TTAGGAAGGAGTATGGTCTCACCGAAGAACATGTCAAAGCTATTCTTGAGGACGTCTTTA
TTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACCTTTGCTGAGCTCATGCGGA
AGCCACACATGCTCAAGAAGGTGCAGGATGAGGTGAGGGCTTGCATTCCCAATGGACAAG
CAATTGTTAGTGAAGTTCAAGTTAACAACATGACTTACCTGAGAGCAGTTGTGAAGGAGG
TACTAAGGCTGCACCCTGTGGCACCACTCCTTGCGACACACGTCTCCATGGCTGACTGCA
ACATCAATGGGTATATGATCCCTTCAGGGATGCGTGTCTTGGTCAACGCCTGGGCCATTG
GTAGGGACGAACGCTTCTGGTATGATCCAGAGAAGTTCATGCCAGAAAGGTTTGTTGAAA
GTGTGAATGGTTCTGCCACTGCGTCAGTCAACTTTTGGGTGAATAACTATCAATACTTGC
CATTTGGTTCTGGAAGGAGAATGTGCCTCGGGATGAACTTTGCCATGGCAGTTATCGAGA
TCACACTAGCGAACCTTCTCTGGAAATTTGATTGGGCGCTGCCTGCACATGCAATGGAGG
TTGATATGTCAGAAGAGTTTGGGTTGTCGGTGCGTCTGAAAGAAAAGCTATTGTTGGTTC
CAAAGCAACATGTGTAGCTGCTAGCAAGTACTCGAAGGAATTGAATTGTCCAACTTTAAT
GTGAGAAAGTCTACCATGACCTATGGGGGTCTACACTAATGTTAACCTCTGGACAAAGTC
ATTATACACCGTTTCTCTATGCTTCAACCCTTGGAGGATCCAATTCTTATCACAAAATAT
GTGTGTAACAAGTAATAATTTTTGCATGGTTGTCGATGCTTAATCTGTTTGTTTGTTTAC
TTTGTGTATGCAGTGGTGTATGATCAGTTTGGTTAACTGCCTAGCCATTTGTAATAATTA
ATGTTTCANGCTAATACCTTCATAATAATAGAATATTGATTGGTGACATAATAAAAAAAA
A

consensusID : consensus_12010#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1282
fasta sequence

                              [GACATTGGCTTCGCACCGTATGGCGAGGATTGGCGGCAGGCAAGGAAGCTTGTGAACACGCACCTGCTGAGTGTCAACAAGGTGCAGTCGCTATGGCTTGCCCGTGAGGAGGAGGTGAAAATTGTGATGGAGAAGATAAGCAAAGCGGCATTCGCACGTGAAGCAGTGGATATAGGCCAGATTCTTTGCTCATTCACAAACGATCTCGCATGCCGTGTTGTGTCAAGGAAGTTAGTCGGGGATGACAGGCAGAAAAAGCTCCTCCAAGAGTTGGTTAATAAGACAATAAAGCTGCTTTCTATCTTCAACGTGGAGGAGTACTTTTCAATTTTAGCTCGGATTGGCGTGATTGGGAAGGTGATGTGCGCAAGAGCTGAGAGGTTGAAAAAGAAGTGGGACATGCTGCTGAAAAAGCTGATCGCCGACCATGAGAGCAAGTGCGATTCATACTTAGTATGTGGCCGTAACAAAGATGACTTTGTGGACATTTTACTGTCTGTTAGGAAGGAGTATGGTCTCACCGAAGAACATGTCAAAGCTATTCTTGAGGACGTCTTTATTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACCTTTGCTGAGCTCATGCGGAAGCCACACATGCTCAAGAAGGTGCAGGATGAGTTGTGAAGGAGGTACTAAGGCTGCACCCTGTGGCACCACTCCTTGCGACACACGTCTCCATGGCTGACTGCAACATCAATGGGTATATGATCCCTTCAGGNATGCGTGTCTTGGTCAACGCCTGGGCCATTGGTAGGGACGAACGCTTCTGGTATGATCCAGAGAAGTTCATGCCAGAAAGGTTTGTTGAAAGTGTGAATGGTTCTGCCACTGCGTCAGTCAACTTTTGGGTGAATAACTATCAATACTTGCCATTTGGTTCTGGAAGGAGAATGTGCCTCGGGATGAACTTTGCCATGGCAGTTATCGAGATCACACTAGCGAACCTTCTCTGGAAATTTGATTGGGCGCTGCCTGCACATGCAATGGAGGTTGATATGTCAGAAGAGTTTGGGTTGTCGGTGCGTCTGAAAGAAAAGCTATTGTTGGTTCCAAAGCAACATGTGTAGCTGCTAGCAAGTACTCGAAGGAATTGAATTGTCCAACTTTAATGTGAGAAAGTCTACCATGACCTATGGGGGTCTACACTAATGTTAACCTCTGGACAAAGTCATTATACACCGTTTCTCTATGCTTCAACCCTTGGAGGATCCAATTCTTATCACAAAATATGTGTGTAACAAAAAAAAGA]

[+] EMBL CB656446             [GACATTGGCTTCGCACCGTATGGCGAGGATTGGCGGCAGGCAAGGAAGCTTGTGAACACGCACCTGCTGAGTGTCAACAAGGTGCAGTCGCTATGGCTTGCCCGTGAGGAGGAGGTGAAAATTGTGATGGAGAAGATAAGCAAAGCGGCATTCGCACGTGAAGCAGTGGATATAGGCCAGATTCTTTGCTCATTCACAAACGATCTCGCATGCCGTGTTGTGTCAAGGAAGTTAGTCGGGGATGACAGGCAGAAAAAGCTCCTCCAAGAGTTGGTTAATAAGACAATAAAGCTGCTTTCTATCTTCAACGTGGAGGAGTACTTTTCAATTTTAGCTCGGATTGGCGTGATTGGGAAGGTGATGTGCGCAAGAGCTGAGAGGTTGAAAAAGAAGTGGGACATGCTGCTGAAAAAGCTGATCGCCGACCATGAGAGCAAGTGCGATTCATACTTAGTATGTGGCCGTAACAAAGATGACTTTGTGGACATTTTACTGTCTGTTAGGAAGGAGTATGGTCTCACCGAAGAACATGTCAAAGCTATTCTTGAGGACGTCTTTATTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACCTTTGCTGAGCTCATGCGGAAGCCACACATGCTCAAGAAGGTGCAGGATGAGTTGTGAAGGAGGTACTAAGGCTGCACCCTGTGGCACCACTCCTTGCGACACACGTCTCCATGGCTGACTGCAACATCAATGGGTATATGATCCCTTCAGGNATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB656447             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGTATGGTCTCACCGAAGAACATGTCAAAGCTATTCTTGAGGACGTCTTTATTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACCTTTGCTGAGCTCATGCGGAAGCCACACATGCTCAAGAAGGTGCAGGATGAGTTGTGAAGGAGGTACTAAGGCTGCACCCTGTGGCACCACTCCTTGCGACACACGTCTCCATGGCTGACTGCAACATCAATGGGTATATGATCCCTTCAGGGATGCGTGTCTTGGTCAACGCCTGGGCCATTGGTAGGGACGAACGCTTCTGGTATGATCCAGAGAAGTTCATGCCAGAAAGGTTTGTTGAAAGTGTGAATGGTTCTGCCACTGCGTCAGTCAACTTTTGGGTGAATAACTATCAATACTTGCCATTTGGTTCTGGAAGGAGAATGTGCCTCGGGATGAACTTTGCCATGGCAGTTATCGAGATCACACTAGCGAACCTTCTCTGGAAATTTGATTGGGCGCTGCCTGCACATGCAATGGAGGTTGATATGTCAGAAGAGTTTGGGTTGTCGGTGCGTCTGAAAGAAAAGCTATTGTTGGTTCCAAAGCAACATGTGTAGCTGCTAGCAAGTACTCGAAGGAATTGAATTGTCCAACTTTAATGTGAGAAAGTCTACCATGACCTATGGGGGTCTACACTAATGTTAACCTCTGGACAAAGTCATTATACACCGTTTCTCTATGCTTCAACCCTTGGAGGATCCAATTCTTATCACAAAATATGTGTGTAACAAAAAAAAGA]
[+] EMBL AU069890             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CACATGCAATGGAGGTTGATATGTCAGAAGAGTTTGGGTTGTCGGTGCGTCTGAAAGAAAAGCTATTGTTGGTTCCAAAGCAACATGTGTAGCTGCTAGCAAGTACTCGAAGGAATTGAATTGTCCAACTTTAATGTGAGAAAGTCTACCATGACCTATGGGGGTCTACACTAATGTTAACCTCTGGACAAAGTCATTATACACCGTTTCTCTATGCTTCAACCCTTGGAGGATCCAATTCTTATCACAAAAaaa                   ]




>consensus_12010#1
GACATTGGCTTCGCACCGTATGGCGAGGATTGGCGGCAGGCAAGGAAGCTTGTGAACACG
CACCTGCTGAGTGTCAACAAGGTGCAGTCGCTATGGCTTGCCCGTGAGGAGGAGGTGAAA
ATTGTGATGGAGAAGATAAGCAAAGCGGCATTCGCACGTGAAGCAGTGGATATAGGCCAG
ATTCTTTGCTCATTCACAAACGATCTCGCATGCCGTGTTGTGTCAAGGAAGTTAGTCGGG
GATGACAGGCAGAAAAAGCTCCTCCAAGAGTTGGTTAATAAGACAATAAAGCTGCTTTCT
ATCTTCAACGTGGAGGAGTACTTTTCAATTTTAGCTCGGATTGGCGTGATTGGGAAGGTG
ATGTGCGCAAGAGCTGAGAGGTTGAAAAAGAAGTGGGACATGCTGCTGAAAAAGCTGATC
GCCGACCATGAGAGCAAGTGCGATTCATACTTAGTATGTGGCCGTAACAAAGATGACTTT
GTGGACATTTTACTGTCTGTTAGGAAGGAGTATGGTCTCACCGAAGAACATGTCAAAGCT
ATTCTTGAGGACGTCTTTATTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACC
TTTGCTGAGCTCATGCGGAAGCCACACATGCTCAAGAAGGTGCAGGATGAGTTGTGAAGG
AGGTACTAAGGCTGCACCCTGTGGCACCACTCCTTGCGACACACGTCTCCATGGCTGACT
GCAACATCAATGGGTATATGATCCCTTCAGGNATGCGTGTCTTGGTCAACGCCTGGGCCA
TTGGTAGGGACGAACGCTTCTGGTATGATCCAGAGAAGTTCATGCCAGAAAGGTTTGTTG
AAAGTGTGAATGGTTCTGCCACTGCGTCAGTCAACTTTTGGGTGAATAACTATCAATACT
TGCCATTTGGTTCTGGAAGGAGAATGTGCCTCGGGATGAACTTTGCCATGGCAGTTATCG
AGATCACACTAGCGAACCTTCTCTGGAAATTTGATTGGGCGCTGCCTGCACATGCAATGG
AGGTTGATATGTCAGAAGAGTTTGGGTTGTCGGTGCGTCTGAAAGAAAAGCTATTGTTGG
TTCCAAAGCAACATGTGTAGCTGCTAGCAAGTACTCGAAGGAATTGAATTGTCCAACTTT
AATGTGAGAAAGTCTACCATGACCTATGGGGGTCTACACTAATGTTAACCTCTGGACAAA
GTCATTATACACCGTTTCTCTATGCTTCAACCCTTGGAGGATCCAATTCTTATCACAAAA
TATGTGTGTAACAAAAAAAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12010#0      CTTGCATCCCTGAACTGTTCTACAATATAGATCTCATGGATGAGATGGCTGCACGAACAT 60
consensus_12010#1      ------------------------------------------------------------
                                                                                   

consensus_12010#0      GGTTGTGGTTGCTACTGTCCCCTCTCATCCTCCTACTGCTGCACTATGCTCTGGCCCTGC 120
consensus_12010#1      ------------------------------------------------------------
                                                                                   

consensus_12010#0      TAACTGCACGCCGAGCGAGGAAGAACCCCTTGCCACCTTCACCTCCAGCCTTGCCATTCA 180
consensus_12010#1      ------------------------------------------------------------
                                                                                   

consensus_12010#0      TCGGGCACCTCCACCTCATCGGCGCCCTCCCTCACGTCTCCCTCTGCTGCCTCGCCACGA 240
consensus_12010#1      ------------------------------------------------------------
                                                                                   

consensus_12010#0      AGCATGCGCCCGACCTCATGTTCCTCCGACTTGGCACGTCGTTGCCGGTGCTCGTCGCTT 300
consensus_12010#1      ------------------------------------------------------------
                                                                                   

consensus_12010#0      CCTCGCCCTGTGCCGCCGAGGCCATCCTGCGCACGCATGACGACGTGTTCGCGTCGCGGC 360
consensus_12010#1      ------------------------------------------------------------
                                                                                   

consensus_12010#0      CACGCACCGTTCTAGCGGATATCATCTTCTACGGCTCGCGCGACATTGGCTTCGCACCGT 420
consensus_12010#1      -----------------------------------------GACATTGGCTTCGCACCGT 19
                                                                *******************

consensus_12010#0      ATGGCGAGGATTGGCGGCAGGCAAGGAAGCTTGTGAACACGCACCTGCTGAGTGTCAACA 480
consensus_12010#1      ATGGCGAGGATTGGCGGCAGGCAAGGAAGCTTGTGAACACGCACCTGCTGAGTGTCAACA 79
                       ************************************************************

consensus_12010#0      AGGTGCAGTCGCTATGGCTTGCCCGTGAGGAGGAGGTGAAAATTGTGATGGAGAAGATAA 540
consensus_12010#1      AGGTGCAGTCGCTATGGCTTGCCCGTGAGGAGGAGGTGAAAATTGTGATGGAGAAGATAA 139
                       ************************************************************

consensus_12010#0      GCAAAGCGGCATTCGCACGTGAAGCAGTGGATATAGGCCAGATTCTTTGCTCATTCACAA 600
consensus_12010#1      GCAAAGCGGCATTCGCACGTGAAGCAGTGGATATAGGCCAGATTCTTTGCTCATTCACAA 199
                       ************************************************************

consensus_12010#0      ACGATCTCGCATGCCGTGTTGTGTCAAGGAAGTTAGTCGGGGATGACAGGCAGAAAAAGC 660
consensus_12010#1      ACGATCTCGCATGCCGTGTTGTGTCAAGGAAGTTAGTCGGGGATGACAGGCAGAAAAAGC 259
                       ************************************************************

consensus_12010#0      TCCTCCAAGAGTTGGTTAATAAGACAATAAAGCTGCTTTCTATCTTCAACGTGGAGGAGT 720
consensus_12010#1      TCCTCCAAGAGTTGGTTAATAAGACAATAAAGCTGCTTTCTATCTTCAACGTGGAGGAGT 319
                       ************************************************************

consensus_12010#0      ACTTTTCAATTTTAGCTCGGATTGGCGTGATTGGGAAGGTGATGTGCGCAAGAGCTGAGA 780
consensus_12010#1      ACTTTTCAATTTTAGCTCGGATTGGCGTGATTGGGAAGGTGATGTGCGCAAGAGCTGAGA 379
                       ************************************************************

consensus_12010#0      GGTTGAAAAAGAAGTGGGACATGCTGCTGAAAAAGCTGATCGCCGACCATGAGAGCAAGT 840
consensus_12010#1      GGTTGAAAAAGAAGTGGGACATGCTGCTGAAAAAGCTGATCGCCGACCATGAGAGCAAGT 439
                       ************************************************************

consensus_12010#0      GCGATTCATACTTAGTATGTGGCCGTAACAAAGATGACTTTGTGGACATTTTACTGTCTG 900
consensus_12010#1      GCGATTCATACTTAGTATGTGGCCGTAACAAAGATGACTTTGTGGACATTTTACTGTCTG 499
                       ************************************************************

consensus_12010#0      TTAGGAAGGAGTATGGTCTCACCGAAGAACATGTCAAAGCTATTCTTGAGGACGTCTTTA 960
consensus_12010#1      TTAGGAAGGAGTATGGTCTCACCGAAGAACATGTCAAAGCTATTCTTGAGGACGTCTTTA 559
                       ************************************************************

consensus_12010#0      TTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACCTTTGCTGAGCTCATGCGGA 1020
consensus_12010#1      TTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACCTTTGCTGAGCTCATGCGGA 619
                       ************************************************************

consensus_12010#0      AGCCACACATGCTCAAGAAGGTGCAGGATGAGGTGAGGGCTTGCATTCCCAATGGACAAG 1080
consensus_12010#1      AGCCACACATGCTCAAGAAGGTGCAGGATGAG---------------------------- 651
                       ********************************                            

consensus_12010#0      CAATTGTTAGTGAAGTTCAAGTTAACAACATGACTTACCTGAGAGCAGTTGTGAAGGAGG 1140
consensus_12010#1      ------------------------------------------------TTGTGAAGGAGG 663
                                                                       ************

consensus_12010#0      TACTAAGGCTGCACCCTGTGGCACCACTCCTTGCGACACACGTCTCCATGGCTGACTGCA 1200
consensus_12010#1      TACTAAGGCTGCACCCTGTGGCACCACTCCTTGCGACACACGTCTCCATGGCTGACTGCA 723
                       ************************************************************

consensus_12010#0      ACATCAATGGGTATATGATCCCTTCAGGGATGCGTGTCTTGGTCAACGCCTGGGCCATTG 1260
consensus_12010#1      ACATCAATGGGTATATGATCCCTTCAGGNATGCGTGTCTTGGTCAACGCCTGGGCCATTG 783
                       **************************** *******************************

consensus_12010#0      GTAGGGACGAACGCTTCTGGTATGATCCAGAGAAGTTCATGCCAGAAAGGTTTGTTGAAA 1320
consensus_12010#1      GTAGGGACGAACGCTTCTGGTATGATCCAGAGAAGTTCATGCCAGAAAGGTTTGTTGAAA 843
                       ************************************************************

consensus_12010#0      GTGTGAATGGTTCTGCCACTGCGTCAGTCAACTTTTGGGTGAATAACTATCAATACTTGC 1380
consensus_12010#1      GTGTGAATGGTTCTGCCACTGCGTCAGTCAACTTTTGGGTGAATAACTATCAATACTTGC 903
                       ************************************************************

consensus_12010#0      CATTTGGTTCTGGAAGGAGAATGTGCCTCGGGATGAACTTTGCCATGGCAGTTATCGAGA 1440
consensus_12010#1      CATTTGGTTCTGGAAGGAGAATGTGCCTCGGGATGAACTTTGCCATGGCAGTTATCGAGA 963
                       ************************************************************

consensus_12010#0      TCACACTAGCGAACCTTCTCTGGAAATTTGATTGGGCGCTGCCTGCACATGCAATGGAGG 1500
consensus_12010#1      TCACACTAGCGAACCTTCTCTGGAAATTTGATTGGGCGCTGCCTGCACATGCAATGGAGG 1023
                       ************************************************************

consensus_12010#0      TTGATATGTCAGAAGAGTTTGGGTTGTCGGTGCGTCTGAAAGAAAAGCTATTGTTGGTTC 1560
consensus_12010#1      TTGATATGTCAGAAGAGTTTGGGTTGTCGGTGCGTCTGAAAGAAAAGCTATTGTTGGTTC 1083
                       ************************************************************

consensus_12010#0      CAAAGCAACATGTGTAGCTGCTAGCAAGTACTCGAAGGAATTGAATTGTCCAACTTTAAT 1620
consensus_12010#1      CAAAGCAACATGTGTAGCTGCTAGCAAGTACTCGAAGGAATTGAATTGTCCAACTTTAAT 1143
                       ************************************************************

consensus_12010#0      GTGAGAAAGTCTACCATGACCTATGGGGGTCTACACTAATGTTAACCTCTGGACAAAGTC 1680
consensus_12010#1      GTGAGAAAGTCTACCATGACCTATGGGGGTCTACACTAATGTTAACCTCTGGACAAAGTC 1203
                       ************************************************************

consensus_12010#0      ATTATACACCGTTTCTCTATGCTTCAACCCTTGGAGGATCCAATTCTTATCACAAAATAT 1740
consensus_12010#1      ATTATACACCGTTTCTCTATGCTTCAACCCTTGGAGGATCCAATTCTTATCACAAAATAT 1263
                       ************************************************************

consensus_12010#0      GTGTGTAACAAGTAATAATTTTTGCATGGTTGTCGATGCTTAATCTGTTTGTTTGTTTAC 1800
consensus_12010#1      GTGTGTAACAAAAAAAAGA----------------------------------------- 1282
                       ***********  ** *                                           

consensus_12010#0      TTTGTGTATGCAGTGGTGTATGATCAGTTTGGTTAACTGCCTAGCCATTTGTAATAATTA 1860
consensus_12010#1      ------------------------------------------------------------
                                                                                   

consensus_12010#0      ATGTTTCANGCTAATACCTTCATAATAATAGAATATTGATTGGTGACATAATAAAAAAAA 1920
consensus_12010#1      ------------------------------------------------------------
                                                                                   

consensus_12010#0      A 1921
consensus_12010#1      -