cluster # 12017

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Oryza sativa
cluster # 12017 cluster # 12017 Sequences # 10 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12017#0 length = 1132 sequences # 4
consensus_12017#1 length = 552 sequences # 2
consensus_12017#2 length = 485 sequences # 1

consensus_12017#3 length = 353 sequences # 1
consensus_12017#4 length = 320 sequences # 1
consensus_12017#5 length = 279 sequences # 1

consensusID : consensus_12017#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1132
fasta sequence

                              [GAATAAACCAAGATCTTACCATGACTGCAATTTTAGAGAGACGCGAAAGTACAAGCCTGTGGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAAAAACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTCTTGAAGTTCCATCTCTTAATGGATAAGGCTTTTCTGTCAACAGCTAGCAATTACTGAACAAAANAAANAANNAAA]

[+] EMBL AU075861             [GAATAAACCAAGATCTTACCATGACTGCAATTTTAGAGAGACGCGAAAGTACAAGCCTGTGGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BI799088             [                                                                                                                                                                                    tgGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCC ATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAAAAA                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL AU165140             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAGGAAACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTCTTGAAGTTCCATCTCTTAATGGATAAGGCTTTTCTGTCAACAGCTAGCAATTACTGAACAAA             ]
[+] EMBL AU075862             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTCTTGAAGTTCCATCTCTTAATGGATAAGGCTTTTCTGCTAACATATNGCAATTTTTGAAAAAAANAAANAANNAAA]




>consensus_12017#0
GAATAAACCAAGATCTTACCATGACTGCAATTTTAGAGAGACGCGAAAGTACAAGCCTGT
GGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCG
GTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCG
CTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACG
GAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTT
ACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGC
TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGA
GTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTG
CTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTT
TAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTA
TGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTA
TGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTA
ATGAGGGTTACAGATTTGGTCAAGAGGAAAAAACTTATAATATTGTGGCCGCTCATGGTT
ATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCT
TCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGG
CTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTA
TTAATACTTGGGCTGATATCATCAACCGTGCTAATCCTTGGTATGGAAGTAATGCACGAA
CGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTCTTGAAGTTCCATCTCTTAATGGA
TAAGGCTTTTCTGTCAACAGCTAGCAATTACTGAACAAAANAAANAANNAAA

consensusID : consensus_12017#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 552
fasta sequence

                              [AGCTACCTAGAGTCATCCATGGTCCTGAAGAGTTGCAGAGAGTAGAGATATATCTAAAGCTATATATGTACACTATTTTTGTACTAAGAGAGCAAGGCTTACATGGAGACAAGGGTTTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTCCTTGTGTGCTTGCATCTCTCCTTCATCTGTATCTATGCCGATCTGTTCTGAAGAATCAATGCATGCTGGTGCGGCTAATTAAGGTCGAGCGATCTTGTGTTGTACTTTGATGCTGCTTCTTTCTACCCATCACATAGGCAGAATTAATCCCTTATATTTATGAATTAATGGATGTAGTATTTTGGATCCATCATCCATGATGATCCAATGTAAATATGTAATCATATATATGTGTGTATGTGTATGTATCTCTATACGATACATATATAGTTTTCTTTTTTACTTTATTTTGGGCCTGATGAGAGGGGCAGCTAGCTAGCTCATCAAGTGGCGCTTAACTATGTTTATTCATGAAGAGATATGTTATAATGGTTTCTATTGGAAGTGGAAAAAACAAGGAA]

[+] EMBL CB683709             [AGCTACCTAGAGTCATCCATGGTCCTGAAGAGTTGCAGAGAGTAGAGATATATCTAAAGCTATATATGTACACTATTTTTGTACTAAGAGAGCAAGGCTTACATGGAGACAAGGGTTTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTCCTTGTGTGCTTGCATCTCTCCTTCATCTGTATCTATGCCGATCTGTTCTGAAGAATCAATGCATGCTGGTGCGGCTAATTAAGGTCGAGCGATCTTGTGTTGTACTTTGATGCTGCTTCTTTCTACCCATCACATAGGCAGAATTAATCCCTTATATTTATGAATTAATGGATGTAGTATTTTGGATCCATCATCCATGATGATCCAATGTAAATATGTAATCATATATATGTGTGTATGTGTATGTATCTCTATACGATACATATATAGTTTTCTTTTTTACTTTATTTTGGGCCTGATGAGAGGGGCAGCTAGCTAGCTCATCAAGTGGCGCTTAACTATGTTTATTCATGAAGAGATATGTTATAATGGTTTCTATTGGAAGTGGAAAAAACAAGGAA]
[+] EMBL CB683683             [AGCTAGCTAGAGTCATCCATGGTCCTGAAGAGTTGCAGAGAGTAGAGATATATCTAAAGCTATATATGTACACTATTTTTGTACTAAGAGAGCAAGGCTTACATGGAGACAAGGGTTTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTCCTTGTGTGCTTGCATCTCTCCTTCATCTGTATCTATGCCGATCTGTTCTGAAGAATCAATGCATGCTGGTGCGGCTAATTAAGGTCGAGCGATCTTGTGTTGTACTTTGATGCTGCTTCTTTCTACCCATCACATAGGCAGAATTAATCCCTTATATTTAGGAATTAATGGATGTAGTATTTTGGATCCATCATCCATGATGATCCAATGTAAATATGTAATCATATATATGTGTGTATGTGTATGTATCTCTATACGATACATATATAGTTTTCTTTTTTACTTTATTTTGGTCCTGATGAGAGGGGCAGCTAGCTAGCTCATCAAGTGGCGCTTAACTATGTTTATTCATGAAGAGATATGTTATAATGGTTTCTA                       ]




>consensus_12017#1
AGCTACCTAGAGTCATCCATGGTCCTGAAGAGTTGCAGAGAGTAGAGATATATCTAAAGC
TATATATGTACACTATTTTTGTACTAAGAGAGCAAGGCTTACATGGAGACAAGGGTTTAG
CTCTGGTAGCCAAGGATGACTTGCCTGTGTCCTTGTGTGCTTGCATCTCTCCTTCATCTG
TATCTATGCCGATCTGTTCTGAAGAATCAATGCATGCTGGTGCGGCTAATTAAGGTCGAG
CGATCTTGTGTTGTACTTTGATGCTGCTTCTTTCTACCCATCACATAGGCAGAATTAATC
CCTTATATTTATGAATTAATGGATGTAGTATTTTGGATCCATCATCCATGATGATCCAAT
GTAAATATGTAATCATATATATGTGTGTATGTGTATGTATCTCTATACGATACATATATA
GTTTTCTTTTTTACTTTATTTTGGGCCTGATGAGAGGGGCAGCTAGCTAGCTCATCAAGT
GGCGCTTAACTATGTTTATTCATGAAGAGATATGTTATAATGGTTTCTATTGGAAGTGGA
AAAAACAAGGAA

consensusID : consensus_12017#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [CAGAAAAAACACAGAATTAATGCATGAGAAGAAGGGGGGGGGGGGAAAGTTAATTTCTGGAGATGGAAGAGAGCAAGGCTTGCATGGTGATAAGGGTGTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTCCTTGTGTAGAGGATCATTCAGAAAATGAGCCTTGAACTGGTTCATAGGCAGTCTCCTTGGCTAGTCTGAGTCGCTCTTATCACTCATGTTAGGCTTGCATCTCGTTGATCGATATGTAATTAACTACGTTTTCTTCAGAAGGAAAAGTAATTCTTGATGCATTTATCAGTTCTTTGCAAAATCTATACATGCAGAGATACAGTTTGATCATCTTCAGGTTACAGTTACAGGGGAGCACTGCTGCAAAGTTATTCATAACAGTACATATATATATATGCCGTGTGGTATCTTTGCATTATAGGATTGACCTGATCTCACACTTAACTGCATATCATGTTATGTTTGCAACAGGT]

[+] EMBL CF316749             [CAGAAAAAACACAGAATTAATGCATGAGAAGAAGGGGGGGGGGGGAAAGTTAATTTCTGGAGATGGAAGAGAGCAAGGCTTGCATGGTGATAAGGGTGTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTCCTTGTGTAGAGGATCATTCAGAAAATGAGCCTTGAACTGGTTCATAGGCAGTCTCCTTGGCTAGTCTGAGTCGCTCTTATCACTCATGTTAGGCTTGCATCTCGTTGATCGATATGTAATTAACTACGTTTTCTTCAGAAGGAAAAGTAATTCTTGATGCATTTATCAGTTCTTTGCAAAATCTATACATGCAGAGATACAGTTTGATCATCTTCAGGTTACAGTTACAGGGGAGCACTGCTGCAAAGTTATTCATAACAGTACATATATATATATGCCGTGTGGTATCTTTGCATTATAGGATTGACCTGATCTCACACTTAACTGCATATCATGTTATGTTTGCAACAGGT]




>consensus_12017#2
CAGAAAAAACACAGAATTAATGCATGAGAAGAAGGGGGGGGGGGGAAAGTTAATTTCTGG
AGATGGAAGAGAGCAAGGCTTGCATGGTGATAAGGGTGTAGCTCTGGTAGCCAAGGATGA
CTTGCCTGTGTCCTTGTGTAGAGGATCATTCAGAAAATGAGCCTTGAACTGGTTCATAGG
CAGTCTCCTTGGCTAGTCTGAGTCGCTCTTATCACTCATGTTAGGCTTGCATCTCGTTGA
TCGATATGTAATTAACTACGTTTTCTTCAGAAGGAAAAGTAATTCTTGATGCATTTATCA
GTTCTTTGCAAAATCTATACATGCAGAGATACAGTTTGATCATCTTCAGGTTACAGTTAC
AGGGGAGCACTGCTGCAAAGTTATTCATAACAGTACATATATATATATGCCGTGTGGTAT
CTTTGCATTATAGGATTGACCTGATCTCACACTTAACTGCATATCATGTTATGTTTGCAA
CAGGT

consensusID : consensus_12017#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [GCTTGCATGGTGATAAGGGTGTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTCCTTGTGTAGAGGATCATTCAGAAAATGAGCCTTGAACTGGTTCATAGGCAGTCTCCTTGGCTAGTCTGAGTCGCTCTTATCACTCATGTTAGGCTTGCATCTCGTTGATCGATATGTAATTAACTACGTTTTCTTCAGAAGGAAAAGTAATTCTTGATGCATTTATCAGTTCTTTGCAAAATCTATACATGCAGAGATACAGTTTGATCATCTTCAGGTTACAGTTACAGGGGAGCACTGCTGCAAAGTTATTCATAACAGTACATATATATATATGCNNNNNGTATCNNNGCNNTAT]

[+] EMBL CF196420             [GCTTGCATGGTGATAAGGGTGTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTCCTTGTGTAGAGGATCATTCAGAAAATGAGCCTTGAACTGGTTCATAGGCAGTCTCCTTGGCTAGTCTGAGTCGCTCTTATCACTCATGTTAGGCTTGCATCTCGTTGATCGATATGTAATTAACTACGTTTTCTTCAGAAGGAAAAGTAATTCTTGATGCATTTATCAGTTCTTTGCAAAATCTATACATGCAGAGATACAGTTTGATCATCTTCAGGTTACAGTTACAGGGGAGCACTGCTGCAAAGTTATTCATAACAGTACATATATATATATGCNNNNNGTATCNNNGCNNTAT]




>consensus_12017#3
GCTTGCATGGTGATAAGGGTGTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTCCTTGT
GTAGAGGATCATTCAGAAAATGAGCCTTGAACTGGTTCATAGGCAGTCTCCTTGGCTAGT
CTGAGTCGCTCTTATCACTCATGTTAGGCTTGCATCTCGTTGATCGATATGTAATTAACT
ACGTTTTCTTCAGAAGGAAAAGTAATTCTTGATGCATTTATCAGTTCTTTGCAAAATCTA
TACATGCAGAGATACAGTTTGATCATCTTCAGGTTACAGTTACAGGGGAGCACTGCTGCA
AAGTTATTCATAACAGTACATATATATATATGCNNNNNGTATCNNNGCNNTAT

consensusID : consensus_12017#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 320
fasta sequence

                              [CTTCATCTGTATCTATGCCGATCTGTTCTGAAGAATCAATGCATGCTGGTGCGGCTAATTAAGGTACAGGTGATAATTAATCAAATTAATGATATCATATATATGCAGATTATATTATTTAATATGCAGGTCGAGCGATCTTGTGTTGTACTTTGATGCTGCTTCTTTCTACCCATCACATAGGCAGAATTAATCCCTTATATTTAGGAATTAATGGATGTAGTATTTTGGATCCATCATCCATGATGATCCAATGTAAATATGTAATCATATATATGTGTGTATGTGTATGTATCTCTATACGATACATATATANNNTT]

[+] EMBL CF196394             [CTTCATCTGTATCTATGCCGATCTGTTCTGAAGAATCAATGCATGCTGGTGCGGCTAATTAAGGTACAGGTGATAATTAATCAAATTAATGATATCATATATATGCAGATTATATTATTTAATATGCAGGTCGAGCGATCTTGTGTTGTACTTTGATGCTGCTTCTTTCTACCCATCACATAGGCAGAATTAATCCCTTATATTTAGGAATTAATGGATGTAGTATTTTGGATCCATCATCCATGATGATCCAATGTAAATATGTAATCATATATATGTGTGTATGTGTATGTATCTCTATACGATACATATATANNNTT]




>consensus_12017#4
CTTCATCTGTATCTATGCCGATCTGTTCTGAAGAATCAATGCATGCTGGTGCGGCTAATT
AAGGTACAGGTGATAATTAATCAAATTAATGATATCATATATATGCAGATTATATTATTT
AATATGCAGGTCGAGCGATCTTGTGTTGTACTTTGATGCTGCTTCTTTCTACCCATCACA
TAGGCAGAATTAATCCCTTATATTTAGGAATTAATGGATGTAGTATTTTGGATCCATCAT
CCATGATGATCCAATGTAAATATGTAATCATATATATGTGTGTATGTGTATGTATCTCTA
TACGATACATATATANNNTT

consensusID : consensus_12017#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [GCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTGCAACATGGGCAGTCTCCTTGGATAGCCTGAGTGATTCTTGTCACTTATGCTAGGCTTGCATCTCTCCTTCATCTGTATGTATGCCGATCTGTTATGAAGAATC]

[-] EMBL CF310102             [GCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTGCAACATGGGCAGTCTCCTTGGATAGCCTGAGTGATTCTTGTCACTTATGCTAGGCTTGCATCTCTCCTTCATCTGTATGTATGCCGATCTGTTATGAAGAATC]




>consensus_12017#5
GCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCC
TTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTG
GGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTGCAAC
ATGGGCAGTCTCCTTGGATAGCCTGAGTGATTCTTGTCACTTATGCTAGGCTTGCATCTC
TCCTTCATCTGTATGTATGCCGATCTGTTATGAAGAATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12017#0      GAATAAACCAAGATCTTACCATGACTGCAATTTTAGAGAGACGCGAAAGTACAAGCCTGT 60
consensus_12017#5      ------------------------------------------------------------
consensus_12017#2      ------------------------------------------------------------
consensus_12017#3      ------------------------------------------------------------
consensus_12017#1      ------------------------------------------------------------
consensus_12017#4      ------------------------------------------------------------
                                                                                   

consensus_12017#0      GGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCG 120
consensus_12017#5      ------------------------------------------------------------
consensus_12017#2      ------------------------------------------------------------
consensus_12017#3      ------------------------------------------------------------
consensus_12017#1      ------------------------------------------------------------
consensus_12017#4      ------------------------------------------------------------
                                                                                   

consensus_12017#0      GTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCG 180
consensus_12017#5      ------------------------------------------------------------
consensus_12017#2      ------------------------------------------------------------
consensus_12017#3      ------------------------------------------------------------
consensus_12017#1      ------------------------------------------------------------
consensus_12017#4      ------------------------------------------------------------
                                                                                   

consensus_12017#0      CTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACG 240
consensus_12017#5      ------------------------------------------------------------
consensus_12017#2      -----------CAGAAAAAACACAGAATTAATGCATGAGAAGAAGGGGGGGGGGGGAAAG 49
consensus_12017#3      ------------------------------------------------------------
consensus_12017#1      ------------------AGCTACCTAGAGTCATCCATGGTCCTGAAGAGTTGCAGAGAG 42
consensus_12017#4      ------------------------------------------------------------
                                                                                   

consensus_12017#0      GAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTT 300
consensus_12017#5      ----------------------------------------------------GCACTTTT 8
consensus_12017#2      TTAATTTCTGGAGATGGAAGAGAGCAAGGCTTGCATG-GTGATAAGGGTGTAGCTCTGGT 108
consensus_12017#3      ----------------------------GCTTGCATG-GTGATAAGGGTGTAGCTCTGGT 31
consensus_12017#1      TAGAGATATATCTAAAGCTATATATGTACACTATTTTTGTACTAAGAGAGCAAGGCTTAC 102
consensus_12017#4      ------------------------------------------------------------
                                                                                   

consensus_12017#0      ACCCAATTTGGGA---AGCTGCATCTGTTGATGAGTGGTTATACA-AT-GGTG-GTCCTT 354
consensus_12017#5      ACCCAATTTGGGA---AGCTGCATCTGTTGATGAGTGGTTATACA-AT-GGTG-GTCCTT 62
consensus_12017#2      AGCCAAGGATGACTT-GCCTGTGTCCTTGTGTAGAGGATCATTCAGAA-AATG-AGCCT- 164
consensus_12017#3      AGCCAAGGATGACTT-GCCTGTGTCCTTGTGTAGAGGATCATTCAGAA-AATG-AGCCT- 87
consensus_12017#1      ATGGAGACAAGGGTTTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTCCTTGTGTGCTT 162
consensus_12017#4      ------------CTTCATCTGTATCTATGCCGATCTGTTCTGAAGAATCAATGCATGCTG 48
                                         **                  *            **    ** 

consensus_12017#0      ATG-AGCTAATTGTTCTACA--CTTCTTACTTGGTGTAGCTTGTTAT-ATGGGTCGTGAG 410
consensus_12017#5      ATG-AGCTAATTGTTCTACA--CTTCTTACTTGGTGTAGCTTGTTAT-ATGGGTCGTGAG 118
consensus_12017#2      -TG-AACTGGTTCATAGGCAGTCTCCTTGGCTAGTCTGAGTCGCTCTTATCACTCATG-- 220
consensus_12017#3      -TG-AACTGGTTCATAGGCAGTCTCCTTGGCTAGTCTGAGTCGCTCTTATCACTCATG-- 143
consensus_12017#1      GCATCTCTCCTTCATCTGTA--TCTAT--GCCGATCTGTTCTGAAGA-ATCA-ATGCATG 216
consensus_12017#4      GTGCGGCTAATTAAGGTACA--GGTGATAATTAATCAAATTAATGAT-ATCATATATATG 105
                             **  **       *              *             **          

consensus_12017#0      TGGGAACTGAGTTTCCGTCT---GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 467
consensus_12017#5      TGGGAACTGAGTTTCCGTCT---GGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 175
consensus_12017#2      ------TTAGGCTTGCATCT---CGTTGATCGATATGTAATTA--ACTACGTTTTCTTCA 269
consensus_12017#3      ------TTAGGCTTGCATCT---CGTTGATCGATATGTAATTA--ACTACGTTTTCTTCA 192
consensus_12017#1      CTGGTGCGGCTAATTAA------GGTCGAGCGATCTTGTGTTGTACTTTGATGCTGCTTC 270
consensus_12017#4      CAGATTATATTATTTAATATGCAGGTCGAGCGATCTTGTGTTGTACTTTGATGCTGCTTC 165
                                    *          *     **   *    **     *   *  *     

consensus_12017#0      CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCT 527
consensus_12017#5      ---------GCAACATGGGCAGTCTCCTTGGATAGCCTGAGTGATTCT-----TGTCACT 221
consensus_12017#2      GAAGGAAAAGTAATTCTTGATGCATTTATCAGTTCTTTGCAAAATCTA-----TACATGC 324
consensus_12017#3      GAAGGAAAAGTAATTCTTGATGCATTTATCAGTTCTTTGCAAAATCTA-----TACATGC 247
consensus_12017#1      TTTCTACCCATCACATAGGCAGAATTAATCCCTTATATTTATGAATTAA----TGGATGT 326
consensus_12017#4      TTTCTACCCATCACATAGGCAGAATTAATCCCTTATATTTAGGAATTAA----TGGATGT 221
                                         *  *  *   *   *                    *      

consensus_12017#0      GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 587
consensus_12017#5      TATGCTAGGCTT----GCATCTCTCCTTCATCTGTATGTATGCCGATCTGTTATGAAGAA 277
consensus_12017#2      AGAGATACAGTTT---GATCATCTTCAGGTTACAGTTACAGGGGAGCACTGC-TGCAAAG 380
consensus_12017#3      AGAGATACAGTTT---GATCATCTTCAGGTTACAGTTACAGGGGAGCACTGC-TGCAAAG 303
consensus_12017#1      AGTATTTTGGATC---CATCATCCATGATGATCCAATGTAAATATGTAAT-CATATATAT 382
consensus_12017#4      AGTATTTTGGATC---CATCATCCATGATGATCCAATGTAAATATGTAAT-CATATATAT 277
                            *     *         **             *  *                * * 

consensus_12017#0      CATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCC 647
consensus_12017#5      TC---------------------------------------------------------- 279
consensus_12017#2      TTATTCATAACAGTACATATATAT-ATATGCCGTGTGGTATCTTTGCATTATAGGATT-- 437
consensus_12017#3      TTATTCATAACAGTACATATATAT-ATATGCNNNNNG-TATCNNNGCNNTAT-------- 353
consensus_12017#1      GTGTGTATGTGTATGTATCTCTATACGATACATATATAGTTTTCTTTTTTACTTTATTTT 442
consensus_12017#4      GTGTGTATGTGTATGTATCTCTATACGATACATATATANNNTT----------------- 320
                                                                                   

consensus_12017#0      CTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAA 707
consensus_12017#5      ------------------------------------------------------------
consensus_12017#2      -GACCTGATCTCACACTTAACTGCATATCATGTTATGTTTGCAACAGGT----------- 485
consensus_12017#3      ------------------------------------------------------------
consensus_12017#1      GGGCCTGATGAGAGGGGCAGCTAGCTAGCTCATCAAGTGGCGCTTAACTATGTTTATTCA 502
consensus_12017#4      ------------------------------------------------------------
                                                                                   

consensus_12017#0      AACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAAAAACTTATAATATTGTG 767
consensus_12017#5      ------------------------------------------------------------
consensus_12017#2      ------------------------------------------------------------
consensus_12017#3      ------------------------------------------------------------
consensus_12017#1      TGAAGAGATATGTTATAATGGTTTCTATTGGAAGTGGAAAAAACAAGGAA---------- 552
consensus_12017#4      ------------------------------------------------------------
                                                                                   

consensus_12017#0      GCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGT 827
consensus_12017#5      ------------------------------------------------------------
consensus_12017#2      ------------------------------------------------------------
consensus_12017#3      ------------------------------------------------------------
consensus_12017#1      ------------------------------------------------------------
consensus_12017#4      ------------------------------------------------------------
                                                                                   

consensus_12017#0      TCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGT 887
consensus_12017#5      ------------------------------------------------------------
consensus_12017#2      ------------------------------------------------------------
consensus_12017#3      ------------------------------------------------------------
consensus_12017#1      ------------------------------------------------------------
consensus_12017#4      ------------------------------------------------------------
                                                                                   

consensus_12017#0      ATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGC 947
consensus_12017#5      ------------------------------------------------------------
consensus_12017#2      ------------------------------------------------------------
consensus_12017#3      ------------------------------------------------------------
consensus_12017#1      ------------------------------------------------------------
consensus_12017#4      ------------------------------------------------------------
                                                                                   

consensus_12017#0      CAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCCTTGGTATGGA 1007
consensus_12017#5      ------------------------------------------------------------
consensus_12017#2      ------------------------------------------------------------
consensus_12017#3      ------------------------------------------------------------
consensus_12017#1      ------------------------------------------------------------
consensus_12017#4      ------------------------------------------------------------
                                                                                   

consensus_12017#0      AGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTCTTGAAGTTCC 1067
consensus_12017#5      ------------------------------------------------------------
consensus_12017#2      ------------------------------------------------------------
consensus_12017#3      ------------------------------------------------------------
consensus_12017#1      ------------------------------------------------------------
consensus_12017#4      ------------------------------------------------------------
                                                                                   

consensus_12017#0      ATCTCTTAATGGATAAGGCTTTTCTGTCAACAGCTAGCAATTACTGAACAAAANAAANAA 1127
consensus_12017#5      ------------------------------------------------------------
consensus_12017#2      ------------------------------------------------------------
consensus_12017#3      ------------------------------------------------------------
consensus_12017#1      ------------------------------------------------------------
consensus_12017#4      ------------------------------------------------------------
                                                                                   

consensus_12017#0      NNAAA 1132
consensus_12017#5      -----
consensus_12017#2      -----
consensus_12017#3      -----
consensus_12017#1      -----
consensus_12017#4      -----