These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1106 fasta sequence [CTAGAGAGGCCACAGGCGGCGGCGGCAGCAGCGGAAGTCTCTCGTCTCGTCCGTGGAGAAAGGGGGAAGACGAAGATGTCGACGGAGGCGGAGACCACCAGCGCCGCCGCCCCCGCCCCCGCCCCCGCCCCCGCATCGGCGCCGGCGCGGTGCCAGCGGATAGGCTGCGACGCCACGTTCACCGACGACAACAACCCCGACGGCTCCTGCCAATACCACCCCTCCGGACCTATGTTTCATGATGGCATGAAACAGTGGAGTTGCTGTAAGCAAAAAAGCCATGATTTTAGCCTATTTTTGGCTATTCCTGGGTGCAAAACTGGAAAGCACACAACTGAGAAACCAATCACAAAAGCAGTTCCTACTAAACCATCAAAGGCAGTTCCAGTCCAGAC-TTCGAAGC-AGAGT-G-TGGGAGC-TGACACTTGC-TCAA-GGTGCCGTCAAGGTTTCTTTTGCTCTGACCATGGATCACAACCCAAGGCACAAATACCAACC-GCTACCAGTGATACTAACATGGTACCTGTTGAGAAGCCTGCAGTTCCACCACCAAAGAAAAAAATTGATCTGAATGAGCCTAGGGTTTGTAAGAACAAAGGATGTGGTAAAACCTACAAGGAGAAGGATAATCATGATGAAGCATGCGATTACCATCCAGGACCTGCAGTTTTTCGCGACAGGATTAGAGGGTGGAAATGTTGTGATATTCATGTCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGTAGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTT-GGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGTTTCATTTTTTGT-CTGAAACGGGGACTTGAAATTGTGTGTGGAGACTTCGGTCTCGTTCGTTGGCTCGTT-GCCAATTCTTCATAGTTAGAAAATCAAATGCTCCATCTAAATGCTAAAAAGCAGACTTTTGGTAACACCCATCTTTC] [+] EMBL AK111881 [CTAGAGAGGCCACAGGCGGCGGCGGCAGCAGCGGAAGTCTCTCGTCTCGTCCGTGGAGAAAGGGGGAAGACGAAGATGTCGACGGAGGCGGAGACCACCAGCGCCGCCGCCCCCGCCCCCGCCCCCGCCCCCGCATCGGCGCCGGCGCGGTGCCAGCGGATAGGCTGCGACGCCACGTTCACCGACGACAACAACCCCGACGGCTCCTGCCAATACCACCCCTCCGGACCTATGTTTCATGATGGCATGAAACAGTGGAGTTGCTGTAAGCAAAAAAGCCATGATTTTAGCCTATTTTTGGCTATTCCTGGGTGCAAAACTGGAAAGCACACAACTGAGAAACCAATCACAAAAGCAGTTCCTACTAAACCATCAAAGGCAGTTCCAGTCCAGAC TTCGAAGC AGAGT G TGGGAGC TGACACTTGC TCAA GGTGCCGTCAAGGTTTCTTTTGCTCTGACCATGGATCACAACCCAAGGCACAAATACCAACC GCTACCAGTGATACTAACATGGTACCTGTTGAGAAGCCTGCAGTTCCACCACCAAAGAAAAAAATTGATCTGAGTGAGCCTAGGGTTTGTAAGAACAAAGGATGTGGTAAAACCTACAAGGAGAAGGATAATCATGATGAAGCATGCGATTACCATCCAGGACCTGCAGTTTTTCGCGACAGGATTAGAGGGTGGAAATGTTGTGATATTCATGTCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGTAGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTT GGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGTTTCATTTTTTGT CTGAAACGGGGACTTGAAATTGTGTGTGGAGACTTCGGTCTCGTTCGTTGGCTCGTT GCCAATTCTTCATAGTTAGAAAATCAAATGCTCCATCTAAATGCTATCCTGCAGACTTTTGGTAACACCCATCTTTC] [+] EMBL AU082374 [ ACAGGCGGNGGCGGCAGCAGCGGAAGTCTCTCGTCTCGTCCGTGGAGAAAGGGGGAAGACGAAGATGTCGACGGAGGCGGAGACCACCAGCGCCGCCGCCCCCGCCCCCGCCCCCGCCCCCGCATCGGCGCCGGCGCGGTGCCAGCGGATAGGCTGCGACGCCACGTTCACCGACGACAACAACCCCGACGGCTCCTGCCAATACCACCCCTCCGGACCTATGTTTCATGATGGCATGAAACAGTGGAGTTGCTGTAAGCAAAAAAGCCATGATTTTAGCCTATTTTTGGCTATTCCTGGGTGCAAAACTGGAAAGCACACAACTGAGAAACCAATCACAAAAGCAGTTCCTACTAAACCATTAAAGGCAGTTCCAGTCCAGAC TTCTAAGC AGAGT G TGGGAGC TGACACTTGC TCAA GGTGCCGTCAAGGTTTCTTTTGCTCTGACCATGGATCACAACCCAAGGCACAAATACCAACC GCTACCAGTGATACTAACATGGTACCTGTTGAGAA ] [+] EMBL C28356 [ ACAGGCGGCGGCGGCA NAGCGGAAGTCTCTCGTCTCGTCCGTGGAGAAAGGGGGAAGACGAAGATGTCGACGGAGGCGGAGACCACCAGCNNCGCCGCCCCCGCCCCCGCCCCCGCCCCCGCATCGGCGCCGGCGCGGTGCCAGCGGATAGGCTGCGACGCCACGTTCACCGACGACAACAACCCCGACGGCTCCTGCCAATACCACCCCTCCGGACCTATGTTTCATGATGGCATGAAACAGTGGAGTTGCTGTAAGAAAAAAAGCCATGATTTTAGCCTATTTTTGGCTATTCCTGGGTGCAAAACTGGAAAGCACACAACTGAGAAACCAATCACAAAAGCAGTTNCTACTAAACCATCAAAGGCAGTTCCAGTNCAGACTTTGGAGGC AGAGTNT TGGGAG ] [+] EMBL AU082375 [ GAAACAAAAGT GTTGGAAGCTTGACACTTGCNTCAAGGGTNCCGTCAAGGTTTCTTTTGCTCTGACCATGGATCCCAACCCAAGGCACAAATACCAACCGGCTACCAGTGATACTAACATGGTACCTGTTGAGAAGCCTGCAGTTCCACCACCAAAGAAAAAAATTGATCTGAATGAGCCTAGGGTTTGTAAGAACAAAGGATGTGGTAAAACCTACAAGGAGAAGGATAATCATGATGAAGCATGCGATTACCATCCAGGACCTGCAGTTTTTCGCGACAGGATTAGAGGGTGGAAATGTTGTGATATTCATGTCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGTAGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTT GGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGTTTCATTTTTTGT CTGAAACGGGGACTTGAAATTGTGTGTGGAGACTTCGGTCTCGTTCGTTGGCTCGTT GCCAATTCTTCATAGTTAGAAAATCAAATGCTCCATCTAAATGCTAAAAA ] [-] EMBL CA754519 [ TTTGCTCTGACCATGGATCACAACCCAAGGCACAAATACCAACC GCTACCAGTGATACTAACATGGTACCTGTTGAGAAGCCTGCAGTTCCACCACCAAAGAAAAAAATTGATCTGAATGAGCCTAGGGTTTGTAAGAACAAAGGATGTGGTAAAACCTACAAGGAGAAGGATAATCATGATGAAGCATGCGATTACCATCCAGGACCTGCAGTTTTTCGCGACAGGATTAGAGGGTGGAAATGTTGTGATATTCATGTCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGTAGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTT GGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGTTTCATTTTTTGT CTGAAACGGGGACTTGAAATTGTGTGTGGAGACTTCGGTCTCGTTCGTTGGCTCGTT GCCAATTCTTCATAGTTAGAAAATCAAAT ] [+] EMBL AU092896 [ TGGAAATNTTGTGATATTCATGCCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGANCCCTATTAGCATAAGGTTCTCTTGTATCTCGTAGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTT GGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGTTTCATTTTTTGT CTGAAACGGGGACTTGAAATTGTGTGTGGAGACTTCGGTCTCGTTCGTTGGCTCGTT GCCAATTCTTCATAGTTAGAAAATCAAATGCTCCATCTAAATGCTAAAAA ] [+] EMBL BI796552 [ GATATTCATGTCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGTAGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTT GGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGC AAAGTGTGCGTGGTGTTTCATTTTTTGT CTGAAACGGGGACTTGAAATTGTGTGTGGAGACTTCGGTCTCGTTCGTTGGCTCGTT GCC ATTCTTCATAGTTAGAAAATC AATGCTCaaaaaa ] [+] EMBL BM420460 [ tccgGCATAAGGTGCAATTTTTATGGAGAATTTTACTTCGGATTCGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGC TGGTGTTTCATTTTTTGT CTGAAACGGGGACTTGAAATTGTGTGTGGAGACTTC GTCTCGTTCGTTGGCTCGTTCCCCCATTCTTCATAGTTAGAAAATCAAAa ] [+] EMBL D42877 [ GTGTGCCTGCTTCAAAAGTGTCCGTGGTGTTTCATTTTTTGTGCTGAAACGGGGNCTTGAAATTGTGTGTGGNGACTTCGGTCTCGTTCGTTGGCTCGTT GCCAATTCTTCATAGTTAGNAAATCAAATGCTCCA ] consensusID : consensus_12026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [AGGGTGGAAATGTTGTGATATTCATGTCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGTAGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTTGGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGTTTCATTTTTTGTCTGAAACGGGGACTTGAAATTGTGTGTGGGAGACTTCGGTCTCGTTCGTTGGGCTCGTTGGCCAATTTCTTCATAGTTAGAAAATCAAATGCNCCATCTAAAAAAAAAAANA] [+] EMBL AU162370 [AGGGTGGAAATGTTGTGATATTCATGTCAAGGAATTTGATGAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATTTTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGTAGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTTGGAGTTGGGGAGTGTGGCAAAGATACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGTTTCATTTTTTGTCTGAAACGGGGACTTGAAATTGTGTGTGGGAGACTTCGGTCTCGTTCGTTGGGCTCGTTGGCCAATTTCTTCATAGTTAGAAAATCAAATGCNCCATCTAAAAAAAAAAANA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12026#0 CTAGAGAGGCCACAGGCGGCGGCGGCAGCAGCGGAAGTCTCTCGTCTCGTCCGTGGAGAA 60 consensus_12026#1 ------------------------------------------------------------ consensus_12026#0 AGGGGGAAGACGAAGATGTCGACGGAGGCGGAGACCACCAGCGCCGCCGCCCCCGCCCCC 120 consensus_12026#1 ------------------------------------------------------------ consensus_12026#0 GCCCCCGCCCCCGCATCGGCGCCGGCGCGGTGCCAGCGGATAGGCTGCGACGCCACGTTC 180 consensus_12026#1 ------------------------------------------------------------ consensus_12026#0 ACCGACGACAACAACCCCGACGGCTCCTGCCAATACCACCCCTCCGGACCTATGTTTCAT 240 consensus_12026#1 ------------------------------------------------------------ consensus_12026#0 GATGGCATGAAACAGTGGAGTTGCTGTAAGCAAAAAAGCCATGATTTTAGCCTATTTTTG 300 consensus_12026#1 ------------------------------------------------------------ consensus_12026#0 GCTATTCCTGGGTGCAAAACTGGAAAGCACACAACTGAGAAACCAATCACAAAAGCAGTT 360 consensus_12026#1 ------------------------------------------------------------ consensus_12026#0 CCTACTAAACCATCAAAGGCAGTTCCAGTCCAGACTTCGAAGCAGAGTGTGGGAGCTGAC 420 consensus_12026#1 ------------------------------------------------------------ consensus_12026#0 ACTTGCTCAAGGTGCCGTCAAGGTTTCTTTTGCTCTGACCATGGATCACAACCCAAGGCA 480 consensus_12026#1 ------------------------------------------------------------ consensus_12026#0 CAAATACCAACCGCTACCAGTGATACTAACATGGTACCTGTTGAGAAGCCTGCAGTTCCA 540 consensus_12026#1 ------------------------------------------------------------ consensus_12026#0 CCACCAAAGAAAAAAATTGATCTGAATGAGCCTAGGGTTTGTAAGAACAAAGGATGTGGT 600 consensus_12026#1 ------------------------------------------------------------ consensus_12026#0 AAAACCTACAAGGAGAAGGATAATCATGATGAAGCATGCGATTACCATCCAGGACCTGCA 660 consensus_12026#1 ------------------------------------------------------------ consensus_12026#0 GTTTTTCGCGACAGGATTAGAGGGTGGAAATGTTGTGATATTCATGTCAAGGAATTTGAT 720 consensus_12026#1 --------------------AGGGTGGAAATGTTGTGATATTCATGTCAAGGAATTTGAT 40 **************************************** consensus_12026#0 GAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATT 780 consensus_12026#1 GAATTTATGGAGATCCCTCCGTGCACAAAGGGTTGGCACAATGCTGATGCCGCATGAATT 100 ************************************************************ consensus_12026#0 TTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGT 840 consensus_12026#1 TTCACCATGCCCCATCTTGGAATAAGAACCCTATTAGCATAAGGTTCTCTTGTATCTCGT 160 ************************************************************ consensus_12026#0 AGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTTGGAGTTGGGGAGTGTGGCAAAGA 900 consensus_12026#1 AGTGCATAAGGTGCAATTTTTATGGAGAATTTTACTTGGAGTTGGGGAGTGTGGCAAAGA 220 ************************************************************ consensus_12026#0 TACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGT 960 consensus_12026#1 TACCGAGAATAGGCTGTTTTACCGTGCTCTGTGTGACTGCTGCAAAAGTGTGCGTGGTGT 280 ************************************************************ consensus_12026#0 TTCATTTTTTGTCTGAAACGGGGACTTGAAATTGTGTGTGG-AGACTTCGGTCTCGTTCG 1019 consensus_12026#1 TTCATTTTTTGTCTGAAACGGGGACTTGAAATTGTGTGTGGGAGACTTCGGTCTCGTTCG 340 ***************************************** ****************** consensus_12026#0 TTGG-CTCGTTG-CCAATT-CTTCATAGTTAGAAAATCAAATGCTCCATCTAAATGCTAA 1076 consensus_12026#1 TTGGGCTCGTTGGCCAATTTCTTCATAGTTAGAAAATCAAATGCNCCATCTAAAAAAAAA 400 **** ******* ****** ************************ ********* ** consensus_12026#0 AAAGCAGACTTTTGGTAACACCCATCTTTC 1106 consensus_12026#1 AANA-------------------------- 404 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||