Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12029 cluster # 12029       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12029#0 length = 1242 sequences # 8  
consensus_12029#1 length = 766 sequences # 1  
consensus_12029#2 length = 120 sequences # 1  

consensusID : consensus_12029#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1242
fasta sequence
                              [TGTACACGACGCGACGCCGGCGGCGGCGGCAGCCATGGAGCCCGCGGCGATGGACCGCATCGCCGGCCGCCTCGCCGCCGTAGACGGCCTCTACTACCCGACCACCTTCCTCCTCGCCGACCCGCCGCCGTCCGCCCCGGACCGCAAGGCCGCCCTCCTCGCGCTCCTCTCCCGCGACGCCCCGCTCTTCCTCGAGCGCTACGGCGGGTCGCTGTCCCGCGACGAGCTCGCCGCCTTCGACGCGCTCGCCGGCGACTACGAGGTCGGCTGGCACCTCCGCCGCCTCCGCGCGGCCTCCGAGGGGGGCCCCTCCGCGTCCCGCGTCCGCAACCGCCGCCGCGCCTACCTCGACCGCCTGGTGCGCGAGGGGGAGTACTTCTCCGAGGAGGCTATGCGGGAGCGGGAGCCATACCTGCACCACGAGTACCTTGGCAGGTTCCAGGATCCCACGGGACGGGCCATGGCGAGGCCGGGGGAGCGGTGGTCCGAGACGCTGATGCGGCGGGCTGAGGAGGCCGTGATCGTTGAGAAGATTCGAGGGGAGCAGATTAGGAGAGGGGTTGATCCCAGCGAGT-GGGTAGGTGGTGGCGCTGAGGAGGCCATGGAGGAGCAGGAAGAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGAGCGAGGAGGAGCAAGGCATGGACATGGAGGAGAAAGGAAGAGGTGCCGATAATTCTTCCGAGAATCCGAGTGTGACTGAGGTGGTTGACTCCAACAAAACTGCAGGGGCTTCCAAGCAAACATTATCTGCTGAAGATATGGAGGATCAACTTGAACAGTTTACCAGCTTGATGCAACAGAAGTTCCTGTCCGGTGAAGACTCTGAGCATATGGACTACTCTCGGATCGATAACGACGAGATGCTGGATGACCATTGGTCAAAAGAAGCCAACTATGATGCGGAGGAGAAGTATTTCGAAGAGGATTAGTTCAAAGTTCAAACTAGGCTGCTGTTATAGCATCAGTTATGTAGTGCATCATCGCATCTCGTTTTTTTTTTGTTCATGTTCAGCACTTACTTAGTCTATCATGTACATATATCTATATATGCAGTTGTTGCCCCTCTAATCCGAATAAGTTGAGTAACTTGCTTATGAAAACTACCGTATGTGTTGGAACATCAATCAGAAAATAGGGTCCTGTCTTGTGGAGATGTTTACAAATTGCAAAATATTTTTATGCACTACCTCCAGGATGATGG]

[+] EMBL AK106220             [TGTACACGACGCGACGCCGGCGGCGGCGGCAGCCATGGAGCCCGCGGCGATGGACCGCATCGCCGGCCGCCTCGCCGCCGTAGACGGCCTCTACTACCCGACCACCTTCCTCCTCGCCGACCCGCCGCCGTCCGCCCCGGACCGCAAGGCCGCCCTCCTCGCGCTCCTCTCCCGCGACGCCCCGCTCTTCCTCGAGCGCTACGGCGGGTCGCTGTCCCGCGACGAGCTCGCCGCCTTCGACGCGCTCGCCGGCGACTACGAGGTCGGCTGGCACCTCCGCCGCCTCCGCGCGGCCTCCGAGGGGGGCCCCTCCGCGTCCCGCGTCCGCAACCGCCGCCGCGCCTACCTCGACCGCCTGGTGCGCGAGGGGGAGTACTTCTCCGAGGAGGCTATGCGGGAGCGGGAGCCATACCTGCACCACGAGTACCTTGGCAGGTTCCAGGATCCCACGGGACGGGCCATGGCGAGGCCGGGGGAGCGGTGGTCCGAGACGCTGATGCGGCGGGCTGAGGAGGCCGTGATCGTTGAGAAGATTCGAGGGGAGCAGATTAGGAGAGGGGTTGATCCCAGCGAGT GGGTAGGTGGTGGCGCTGAGGAGGCCATGGAGGAGCAGGAAGAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGAGCGAGGAGGAGCAAGGCATGGACATGGAGGAGAAAGGAAGAGGTGCCGATAATTCTTCCGAGAATCCGAGTGTGACTGAGGTGGTTGACTCCAACAAAACTGCAGGGGCTTCCAAGCAAACATTATCTGCTGAAGATATGGAGGATCAACTTGAACAGTTTACCAGCTTGATGCAACAGAAGTTCCTGTCCGGTGAAGACTCTGAGCATATGGACTACTCTCGGATCGATAACGACGAGATGCTGGATGACCATTGGTCAAAAGAAGCCAACTATGATGCGGAGGAGAAGTATTTCGAAGAGGATTAGTTCAAAGTTCAAACTAGGCTGCTGTTATAGCATCAGTTATGTAGTGCATCATCGCATCTCGTTTTTTTTTTGTTCATGTTCAGCACTTACTTAGTCTATCATGTACATATATCTATATATGCAGTTGTTGCCCCTCTAATCCGAATAAGTTGAGTAA                                                                                                                   ]
[+] EMBL AK103245             [   ACACGACGCGACGCCGGCGGCGGCGGCAGCCATGGAGCCCGCGGCGATGGACCGCATCGCCGGCCGCCTCGCCGCCGTAGACGGCCTCTACTACCCGACCACCTTCCTCCTCGCCGACCCGCCGCCGTCCGCCCCGGACCGCAAGGCCGCCCTCCTCGCGCTCCTCTCCCGCGACGCCCCGCTCTTCCTCGAGCGCTACGGCGGGTCGCTGTCCCGCGACGAGCTCGCCGCCTTCGACGCGCTCGCCGGCGACTACGAGGTCGGCTGGCACCTCCGCCGCCTCCGCGCGGCCTCCGAGGGGGGCCCCTCCGCGTCCCGCGTCCGCAACCGCCGCCGCGCCTACCTCGACCGCCTGGTGCGCGAGGGGGAGTACTTCTCCGAGGAGGCTATGCGGGAGCGGGAGCCATACCTGCACCACGAGTACCTTGGCAGGTTCCAGGATCCCACGGGACGGGCCATGGCGAGGCCGGGGGAGCGGTGGTCCGAGACGCTGATGCGGCGGGCTGAGGAGGCCGTGATCGTTGAGAAGATTCGAGGGGAGCAGATTAGGAGAGGGGTTGATCCCAGCGAGT GGGTAGGTGGTGGCGCTGAGGAGGCCATGGAGGAGCAGGAAGAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGAGCGAGGAGGAGCAAGGCATGGACATGGAGGAGAAAGGAAGAGGTGCCGATAATTCTTCCGAGAATCCGAGTGTGACTGAGGTGGTTGACTCCAACAAAACTGCAGGGGCTTCCAAGCAAACATTATCTGCTGAAGATATGGAGGATCAACTTGAACAGTTTACCAGCTTGATGCAACAGAAGTTCCTGTCCGGTGAAGACTCTGAGCATATGGACTACTCTCGGATCGATAACGACGAGATGCTGGATGACCATTGGTCAAAAGAAGCCAACTATGATGCGGAGGAGAAGTATTTCGAAGAGGATTAGTTCAAAGTTCAAACTAGGCTGCTGTTATAGCATCAGTTATGTAGTGCATCATCGCATCTCGTTTTTTTTTTGTTCATGTTCAGCACTTACTTAGTCTATCATGTACATATATCTATATATGCAGTTGTTGCCCCTCTAATCCGAATAAGTTGAGTAACTTGCTTATGAAAACTACCGTATGTGTTGGAACATCAATCAGAAAATAGGGTCCTGTCTTGTGGAGATGTTTACAAATTGCAAAATATTTTTATGCACTACCTCCAGGATGATGG]
[+] EMBL AK067884             [   ACACGACGCGACGCCGGCGACGGCGGCAGCCATGGAGCCCGCGGCGATGGACCGCATCGCCGGCCGCCTCGCCGCCGTAGACGGCCTCTACTACCCGACCACCTTCCTCCTCGCCAACCCGCCGCCGTCCGCCCCGGACCGCAAGGCCGCCCTCCTCGCGCTCCTCTCCCGCGACGCCCCGCTCTTCCTCGAGCGCTACGGCGGGTCGCTGTCCCGCGACGAGCTCGCCGCCTTCGACGCGCTCGCCGGCGACTACGAGGTCGGCTGGCACCTCCGCCGCCTCCGCGCGGCCTCCGAGGGGGGCCCCTCCGCGTCCCGCGTCCGCAACCGCCGCCGCGCCTA   CGACCGCCTGGTGCGCGAGGGGGAGTACTTCTCCGAGGAGGCTATGCGGGAGCGGGAGCCATACCTGCACCACGAGTACCTTGGCAGGTTCCAGGATCCCACGGGACGGGCCATGGCGAGGCCGGGGGAGCGGTGGTCCGAGACGCTGATGCGGCGGGCTG CGAGGCCGTGATCGTTGAGAAGATTCGAGGGGAGCAGATTAGGAGAGGGGTTGATCCCAGCGAGT GGGTAGGTGGTGGCGCTGAGGAGGCCATGGAGGAGCAGGAAGAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGAGCGAGGAGGAGCAAGGCATGGACATGGAGGAGAAAGGAAGAGGTGCCGATAATTCTTCCGAGAATCCGAGTGTGACTGAGGTGGTTGACTCCAACAAAACTGCAGGGGCTTCCAAGCAAACATTATCTGCTGAAGATATGGAGGATCAACTTGAACAGTTTACCAGCTTGATGCAACAGAAGTTCCTGTCCGGTGAAGACTCTGAGCATATGGACTACTCTCGGATCGATAACGACGAGATGCTGGATGACCATTGGTCAAAAGAAGCCAACTATGATGCGGAGGAGAAGTATTTCGAAGAGGATTAGTTCAAAGTTCAAACTAGGCTGCTGTTATAGCATCAGTTATGTAGTGCATCATCGCATCTCGTTTTTTTTTTGTTCATGTTCAGCACTTACTTAGTCTATCATGTACATATATCTATATATGCAGTTGTTGCCCCTCTAATCCGAATAAGTTGAGTAACTTGCTTATGAAAACTACCGTATGTGTTGGAACATCAATCAGAAAATAGGGTCCTGTCTTGTGGAGATGTT                                            ]
[+] EMBL AK106116             [        ACGCGACGCCGGCGGCGGCGGCAGCCATGGAGCCCGCGGCGATGGACCGCATCGCCGGCCGCCTCGCCGCCGTAGACGGCCTCTACTACCCGACCACCTTCCTCCTCGCCGACCCGCCGCCGTCCGCCCCGGACCGCAAGGCCGCCCTCCTCGCGCTCCTCTCCCGCGACGCCCCGCTCTTCCTCGAGCGCTACGGCGGGTCGCTGTCCCGCGACGAGCTCGCCGCCTTCGACGCGCTCGCCGGCGACTACGAGGTCGGCTGGCACCTCCGCCGCCTCCGCGCGGCCTCCGAGGGGGGCCCCTCCGCGTCCCGCGTCCGCAACCGCCGCCGCGCCTACCTCGACCGCCTGGTGCGCGAGGGGGAGTACTTCTCCGAGGAGGCTATGCGGGAGCGGGAGCCATACCTGCACCACGAGTACCTTGGCAGGTTCCAGGATCCCACGGGACGGGCCATGGCGAGGCCGGGGGAGCGGTGGTCCGAGACGCTGATGCGGCGGGCTGAGGAGGCCGTGATCGTTGAGAAGATTCGAGGGGAGCAGATTAGGAGAGGGGTTGATCCCAGCGAGT GGGTAGGTGGTGGCGCTGAGGAGGCCATGGAGGAGCAGGAAGAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGAGCGAGGAGGAGCAAGGCATGGACATGGAGGAGAAAGGAAGAGGTGCCGATAATTCTTCCGAGAATCCGAGTGTGACTGAGGTGGTTGACTCCAACAAAACTGCAGGGGCTTCCAAGCAAACATTATCTGCTGAAGATATGGAGGATCAACTTGAACAGTTTACCAGCTTGATGCAACAGAAGTTCCTGTCCGGTGAAGACTCTGAGCATATGGACTACTCTCGGATCGATAACGACGAGATGCTGGATGACCATTGGTCAAAAGAAGCCAACTATGATGCGGAGGAGAAGTATTTCGAAGAGGATTAGTTCAAAGTTCAAACTAGGCTGCTGTTATAGCATCAGTTATGTAGTGCATCATCGCATCTCGTTTTTTTTTTGTTCATGTTCAGCACTTACTTAGTCTATCATGTACATATATCTATATATGCAGTTGTTGCCCCTCTAATCCGAATAAGTTGAGTAACTTGCTTATGAAAACTACCGTATGTGTTGGAACATCAATCAGAAAATAGGGTCCTG                                                           ]
[+] EMBL CA755247             [            GACGCCGGCGGCGGCGGCAGCCATGGAGCCCGCGGCGATGGACCGCATCGCCGGCCGCCTCGCCGCCGTAGACGGCCTCTACTACCCGACCACCTTCCTCCTCGCCGACCCGCCGCCGTCCGCCCCGGACCGCAAGGCCGCCCTCCTCGCGCTCCTCTCCCGCGACGCCCCGCTCTTCCTCGAGCGCTACGGCGGGTCGCTGTCCCGCGACGAGCTCGCCGCCTTCGACGCGCTCGCCGGCGACTACGAGGTCGGCTGGCACCTCCGCCGCCTCCGCGCGGCCTCCGAGGGGGGCCCCTCCGCGTCCCGCGTCCGCAACCGCCGCCGCGCCTACCTCGACCGCCTGGTGCGCGAGGGGGAGTACTTCTCCGAGGAGGCTATGCGGGAGCGGGAGCCATACCTGCACCACGAGTACCTTGGCAGGTTCCAGGATCCCACGGGACGGGCCATGGCGAGGCCGGGGGAGCGGTGGTCCGAGACGCTGATGCGGCGGGCTGAGGAGGCCGTGATCGTTGAGAAGATTCGAGGGGAGCAGATTAAGAGAGGGGTTGATCCCAGCGAGTGGGGTA GTGGTGCCGCTGAGGAGG CATGGAGGAGCAGGATGAGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB625989             [                            GCAGCCATGGAGCCCGCGGCGATGGACCGCATCGCCGGCCGCCTCGCCGCCGTAGACGGCCTCTACTACCCGACCACCTTCCTCCTCGCCGACCCGCCGCCGTCCGCCCCGGACCGCAAGGCCGCCCTCCTCGCGCTTCTCTCCCGCGACGCCCCGCTCTTCCTCGAGCGCTACGGCGGGTCGCTGTCCCGCGACGAGCTCGCCGCCTTCGACGCGCTCGCCGGCGACTACGAGGTCGGCTGGCACCTCCGCCGCCTCCGCGCGGCCTCCGAGGGGGGCCCCTCCGCGTCCCGCGTCCGCAACCGCCGCCGCGCCTACCTCGACCGCCTGGTTCGCGAGGGGGAGTACTTCTCCGAGGAGGCTATGCGGGAGCGGGAGCCATACCTGCACCACGAGTACCTTGGCAGGTTCCAGGATCCCACGGGACGGGCCATGGCGAGGCCAGGGGAGCGGTGGTCCGAGACGCTGATGCGGCGGGCTGAGGAGGCCGTGATCGTTGAGAAGATTCGAGGGGAGCAGATTAGGAGAGGGGTTGATCCCAGCGAGT GGGTAGGTGGTGGCGCTGAGGAGGCCATGGAGGAGCAGGAAGAGGAGGAAGAAGAAGAA   GAGGAGGAGGAGGAGGAGGAAGAGAGCGAGGAGGAGCAAGGCATGGACATGGAGGAGAAAGGAAGAGGTGCCGATAATTCTTCCGAGAATCCGAGTGTGACTGAGGTGGTTGACTCCAACAAAACTGCAGGGGCTTCn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB662150             [                                      AGCCCGCCGTGATGGACCGCATCGCCGGCCGCCTCGCCGCCGTAGACGGCCTCTACTACCCGACCACCTTCCTCCTCGCCGACCCGCCGCCGTCCGCCCCGGACCGCAAGGCCGCCCTCCTCGCGCTCCTCTCCCGCGACGCCCCGCTCTTCCTCGAGCGCTACGGCGGGTCGCTGTCCCGCGACGAGCTCGCCGCCTTCGACGCGCTCGCCGGCGACTACGAGGTCGGCTGGCACCTCCGCCGCCTCCGCGCGGCCTCCGAGGGGGGCCCCTCCGCGTCCCGCGTCCGCAACCGCCGCCGCGCCTACCTCGACCGCCTGGTGCGCGAGGGGGAGTACTTCTCCGAGGAGGCTATGCGGGAGCGGGAGCCATACCTGCACCACGAGTACCTTGGCAGGTTCCAGGATCCCACGGGACGGGCCATGGCGAGGCCGGGGGAGCGGTGGTCCGAGACGCTGATGCGGCGGGCTGAGGAGGCCGTGATCGTTGAGAAGATTCGAGGGGAGCAGATTAGGAGAGGGGTTGATCCCAGCGAGT GGGTAGGTGGTGGCGCTGAGGAGGCCATGGAGGAGCAGGAAGAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGAGCGAGGAGGAGCAAGGCATGGACATGGAGGAGAAAGGAAGAGGTGCCGATAATTCTTCCGAGAATCCGAGTGTGACTGAGGTGGTTGACTCCAACAAAACTGCAGGGGCTTCCAAGCAAACATTATCTGCTGAAGATATGGAGGATCAACTTGAACAGTTTACCAGCTTGATGCAACAGAAGTTCCTGTCCGGTGAAGACTCTGAGCATATGGACT                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB625990             [                                                                                                                                                                                                                                                                                                                                                                                                                 GGGAGCCATACCTGCACCACGAGTACCTTGGCAGGTTCCAGGATCCCACGGGACGGGCCATGGCGAGGCCAGGGGAGCGGTGGTCCGAGACGCTGATGCGGCGGGCTGAGGAGGCCGTGATCGTTGAGAAGATTCGAGGGGAGCAGATTAGGAGAGGGGTTGATCCCAGCGAGT GGGTAGGTGGTGGCGCTGAGGAGGCCATGGAGGAGCAGGAAGAGGAGGAAGAAGAAGAA   GAGGAGGAGGAGGAGGAGGAAGAGAGCGAGGAGGAGCAAGGCATGGACATGGAGGAGAAAGGAAGAGGTGCCGATAATTCTTCCGAGAATCCGAGTGTGACTGAGGTGGTTGACTCCAACAAAACTGCAGGGGCTTCCAAGCAAACATTATCTGCTGAAGATATGGAGGATCAACTTGAACAGTTTACCAGCTTGATGCAACAGAAGTTCCTGTCCGGTGAAGACTCTGAGCATATGGACTACTCTCGGATCGATAACGACGAGATGCTGGATGACCATTGGTCAAAAGAAGCCAACTATGATGCGGAGGAGAAGTATTTCGAAGAGGATTAGTTCAAAGTTCAAACTAGGCTGCTGTTATAGCATCAGTTATGTAGTGCATCATCGCATCTCGGTTTTTTTTTGTTCATGTTCAGCACTTACTTAGTCTATCATGTACATATATCTATATATGCAGTTGTTGCCCCTCTAATCCGAATAAGTTGAGTAACTTGATTGGGAAAACTACCGTATGTGTTGGAACATCAATCAAAAAAAAGa                                                                 ]


>consensus_12029#0 TGTACACGACGCGACGCCGGCGGCGGCGGCAGCCATGGAGCCCGCGGCGATGGACCGCAT CGCCGGCCGCCTCGCCGCCGTAGACGGCCTCTACTACCCGACCACCTTCCTCCTCGCCGA CCCGCCGCCGTCCGCCCCGGACCGCAAGGCCGCCCTCCTCGCGCTCCTCTCCCGCGACGC CCCGCTCTTCCTCGAGCGCTACGGCGGGTCGCTGTCCCGCGACGAGCTCGCCGCCTTCGA CGCGCTCGCCGGCGACTACGAGGTCGGCTGGCACCTCCGCCGCCTCCGCGCGGCCTCCGA GGGGGGCCCCTCCGCGTCCCGCGTCCGCAACCGCCGCCGCGCCTACCTCGACCGCCTGGT GCGCGAGGGGGAGTACTTCTCCGAGGAGGCTATGCGGGAGCGGGAGCCATACCTGCACCA CGAGTACCTTGGCAGGTTCCAGGATCCCACGGGACGGGCCATGGCGAGGCCGGGGGAGCG GTGGTCCGAGACGCTGATGCGGCGGGCTGAGGAGGCCGTGATCGTTGAGAAGATTCGAGG GGAGCAGATTAGGAGAGGGGTTGATCCCAGCGAGTGGGTAGGTGGTGGCGCTGAGGAGGC CATGGAGGAGCAGGAAGAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGA GAGCGAGGAGGAGCAAGGCATGGACATGGAGGAGAAAGGAAGAGGTGCCGATAATTCTTC CGAGAATCCGAGTGTGACTGAGGTGGTTGACTCCAACAAAACTGCAGGGGCTTCCAAGCA AACATTATCTGCTGAAGATATGGAGGATCAACTTGAACAGTTTACCAGCTTGATGCAACA GAAGTTCCTGTCCGGTGAAGACTCTGAGCATATGGACTACTCTCGGATCGATAACGACGA GATGCTGGATGACCATTGGTCAAAAGAAGCCAACTATGATGCGGAGGAGAAGTATTTCGA AGAGGATTAGTTCAAAGTTCAAACTAGGCTGCTGTTATAGCATCAGTTATGTAGTGCATC ATCGCATCTCGTTTTTTTTTTGTTCATGTTCAGCACTTACTTAGTCTATCATGTACATAT ATCTATATATGCAGTTGTTGCCCCTCTAATCCGAATAAGTTGAGTAACTTGCTTATGAAA ACTACCGTATGTGTTGGAACATCAATCAGAAAATAGGGTCCTGTCTTGTGGAGATGTTTA CAAATTGCAAAATATTTTTATGCACTACCTCCAGGATGATGG



consensusID : consensus_12029#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 766
fasta sequence
                              [GATCCCACGGGACGGGCCATGGCGAGGCCGGGGGAGCGGTGGTCCGAGACGCTGATGCGGCGGGCTGAGGAGGCCGTGATCGTTGAGAAGATTCGAGGGGAGCAGATTAGGAGAGGGGTTGATCCCAGCGAGTGGGTAGGTGGTGGCGCTGAGGAGGCCATGGAGGAGCAGGAAGAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGAGCGAGGAGGAGCAAGGCATGGACATGGAGGAGAAAGGAAGAGGTGCCGATAATTCTTCCGAGAATCCGAGTGTGACTGAGGTGGTTGACTCCAACAAAACTGCAGGGGCTTCCAAGCAAACATTATCTGCTGAAGATATGGAGGATCAACTTGAACAGTTTACCAGCTTGATGCAACAGAAGTTCCTGTCCGGTGAAGACTCTGAGCATATGGACTACTCTCGGATCGATAACGACGAGATGCTGGATGACCATTGGTCAAAAGAAGCCAACTATGATGCGGAGGAGAAGTATTTCGAAGAGGATTAGTTCAAAGTTCAAACTAGGCTGCTGTTATAGCATCAGTTATGTAGTGCATCATCGCATCTCGTTTTTTTTTTGTTCATGTTCAGCACTTACTTAGTCTATCATGTACATATATCTATATATGCAGTTGTTGCCCCTCTAATCCGAATAAGTTGAGTAACTTGCTTATGAAAACTACCGTATGTGTTGGAACATCAATCAGAAAATAGGGTCCTGTCTTGTGGAGATGTTAAATAAAAAG]

[-] EMBL CB662151             [GATCCCACGGGACGGGCCATGGCGAGGCCGGGGGAGCGGTGGTCCGAGACGCTGATGCGGCGGGCTGAGGAGGCCGTGATCGTTGAGAAGATTCGAGGGGAGCAGATTAGGAGAGGGGTTGATCCCAGCGAGTGGGTAGGTGGTGGCGCTGAGGAGGCCATGGAGGAGCAGGAAGAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGAGCGAGGAGGAGCAAGGCATGGACATGGAGGAGAAAGGAAGAGGTGCCGATAATTCTTCCGAGAATCCGAGTGTGACTGAGGTGGTTGACTCCAACAAAACTGCAGGGGCTTCCAAGCAAACATTATCTGCTGAAGATATGGAGGATCAACTTGAACAGTTTACCAGCTTGATGCAACAGAAGTTCCTGTCCGGTGAAGACTCTGAGCATATGGACTACTCTCGGATCGATAACGACGAGATGCTGGATGACCATTGGTCAAAAGAAGCCAACTATGATGCGGAGGAGAAGTATTTCGAAGAGGATTAGTTCAAAGTTCAAACTAGGCTGCTGTTATAGCATCAGTTATGTAGTGCATCATCGCATCTCGTTTTTTTTTTGTTCATGTTCAGCACTTACTTAGTCTATCATGTACATATATCTATATATGCAGTTGTTGCCCCTCTAATCCGAATAAGTTGAGTAACTTGCTTATGAAAACTACCGTATGTGTTGGAACATCAATCAGAAAATAGGGTCCTGTCTTGTGGAGATGTTAAATAAAAAG]


>consensus_12029#1 GATCCCACGGGACGGGCCATGGCGAGGCCGGGGGAGCGGTGGTCCGAGACGCTGATGCGG CGGGCTGAGGAGGCCGTGATCGTTGAGAAGATTCGAGGGGAGCAGATTAGGAGAGGGGTT GATCCCAGCGAGTGGGTAGGTGGTGGCGCTGAGGAGGCCATGGAGGAGCAGGAAGAGGAG GAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGAGCGAGGAGGAGCAAGGCATG GACATGGAGGAGAAAGGAAGAGGTGCCGATAATTCTTCCGAGAATCCGAGTGTGACTGAG GTGGTTGACTCCAACAAAACTGCAGGGGCTTCCAAGCAAACATTATCTGCTGAAGATATG GAGGATCAACTTGAACAGTTTACCAGCTTGATGCAACAGAAGTTCCTGTCCGGTGAAGAC TCTGAGCATATGGACTACTCTCGGATCGATAACGACGAGATGCTGGATGACCATTGGTCA AAAGAAGCCAACTATGATGCGGAGGAGAAGTATTTCGAAGAGGATTAGTTCAAAGTTCAA ACTAGGCTGCTGTTATAGCATCAGTTATGTAGTGCATCATCGCATCTCGTTTTTTTTTTG TTCATGTTCAGCACTTACTTAGTCTATCATGTACATATATCTATATATGCAGTTGTTGCC CCTCTAATCCGAATAAGTTGAGTAACTTGCTTATGAAAACTACCGTATGTGTTGGAACAT CAATCAGAAAATAGGGTCCTGTCTTGTGGAGATGTTAAATAAAAAG



consensusID : consensus_12029#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 120
fasta sequence
                              [CTATCATGTACATATATCTATATATGCAGTTGTTGCCCCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACTTACCGTAT]

[+] EMBL CF330149             [CTATCATGTACATATATCTATATATGCAGTTGTTGCCCCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACTTACCGTAT]


>consensus_12029#2 CTATCATGTACATATATCTATATATGCAGTTGTTGCCCCTCTAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACTTACCGTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12029#0      TGTACACGACGCGACGCCGGCGGCGGCGGCAGCCATGGAGCCCGCGGCGATGGACCGCAT 60
consensus_12029#1      ------------------------------------------------------------
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      CGCCGGCCGCCTCGCCGCCGTAGACGGCCTCTACTACCCGACCACCTTCCTCCTCGCCGA 120
consensus_12029#1      ------------------------------------------------------------
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      CCCGCCGCCGTCCGCCCCGGACCGCAAGGCCGCCCTCCTCGCGCTCCTCTCCCGCGACGC 180
consensus_12029#1      ------------------------------------------------------------
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      CCCGCTCTTCCTCGAGCGCTACGGCGGGTCGCTGTCCCGCGACGAGCTCGCCGCCTTCGA 240
consensus_12029#1      ------------------------------------------------------------
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      CGCGCTCGCCGGCGACTACGAGGTCGGCTGGCACCTCCGCCGCCTCCGCGCGGCCTCCGA 300
consensus_12029#1      ------------------------------------------------------------
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      GGGGGGCCCCTCCGCGTCCCGCGTCCGCAACCGCCGCCGCGCCTACCTCGACCGCCTGGT 360
consensus_12029#1      ------------------------------------------------------------
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      GCGCGAGGGGGAGTACTTCTCCGAGGAGGCTATGCGGGAGCGGGAGCCATACCTGCACCA 420
consensus_12029#1      ------------------------------------------------------------
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      CGAGTACCTTGGCAGGTTCCAGGATCCCACGGGACGGGCCATGGCGAGGCCGGGGGAGCG 480
consensus_12029#1      ----------------------GATCCCACGGGACGGGCCATGGCGAGGCCGGGGGAGCG 38
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      GTGGTCCGAGACGCTGATGCGGCGGGCTGAGGAGGCCGTGATCGTTGAGAAGATTCGAGG 540
consensus_12029#1      GTGGTCCGAGACGCTGATGCGGCGGGCTGAGGAGGCCGTGATCGTTGAGAAGATTCGAGG 98
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      GGAGCAGATTAGGAGAGGGGTTGATCCCAGCGAGTGGGTAGGTGGTGGCGCTGAGGAGGC 600
consensus_12029#1      GGAGCAGATTAGGAGAGGGGTTGATCCCAGCGAGTGGGTAGGTGGTGGCGCTGAGGAGGC 158
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      CATGGAGGAGCAGGAAGAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGA 660
consensus_12029#1      CATGGAGGAGCAGGAAGAGGAGGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGA 218
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      GAGCGAGGAGGAGCAAGGCATGGACATGGAGGAGAAAGGAAGAGGTGCCGATAATTCTTC 720
consensus_12029#1      GAGCGAGGAGGAGCAAGGCATGGACATGGAGGAGAAAGGAAGAGGTGCCGATAATTCTTC 278
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      CGAGAATCCGAGTGTGACTGAGGTGGTTGACTCCAACAAAACTGCAGGGGCTTCCAAGCA 780
consensus_12029#1      CGAGAATCCGAGTGTGACTGAGGTGGTTGACTCCAACAAAACTGCAGGGGCTTCCAAGCA 338
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      AACATTATCTGCTGAAGATATGGAGGATCAACTTGAACAGTTTACCAGCTTGATGCAACA 840
consensus_12029#1      AACATTATCTGCTGAAGATATGGAGGATCAACTTGAACAGTTTACCAGCTTGATGCAACA 398
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      GAAGTTCCTGTCCGGTGAAGACTCTGAGCATATGGACTACTCTCGGATCGATAACGACGA 900
consensus_12029#1      GAAGTTCCTGTCCGGTGAAGACTCTGAGCATATGGACTACTCTCGGATCGATAACGACGA 458
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      GATGCTGGATGACCATTGGTCAAAAGAAGCCAACTATGATGCGGAGGAGAAGTATTTCGA 960
consensus_12029#1      GATGCTGGATGACCATTGGTCAAAAGAAGCCAACTATGATGCGGAGGAGAAGTATTTCGA 518
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      AGAGGATTAGTTCAAAGTTCAAACTAGGCTGCTGTTATAGCATCAGTTATGTAGTGCATC 1020
consensus_12029#1      AGAGGATTAGTTCAAAGTTCAAACTAGGCTGCTGTTATAGCATCAGTTATGTAGTGCATC 578
consensus_12029#2      ------------------------------------------------------------
                                                                                   

consensus_12029#0      ATCGCATCTCGTTTTTTTTTTGTTCATGTTCAGCACTTACTTAGTCTATCATGTACATAT 1080
consensus_12029#1      ATCGCATCTCGTTTTTTTTTTGTTCATGTTCAGCACTTACTTAGTCTATCATGTACATAT 638
consensus_12029#2      ---------------------------------------------CTATCATGTACATAT 15
                                                                    ***************

consensus_12029#0      ATCTATATATGCAGTTGTTGCCCCTCTAATCCGAATAAGTTGAGTAACTTGCTTATGAAA 1140
consensus_12029#1      ATCTATATATGCAGTTGTTGCCCCTCTAATCCGAATAAGTTGAGTAACTTGCTTATGAAA 698
consensus_12029#2      ATCTATATATGCAGTTGTTGCCCCTCTAAAAAAAAAAAAA-AAAAAAAAAAAAAAAAAAA 74
                       *****************************    ** **    *  **       *  ***

consensus_12029#0      ACTACCGTATGTGTTGGAACATCAATCAGAAAATAGGGTCCTGTCTTGTGGAGATGTTTA 1200
consensus_12029#1      ACTACCGTATGTGTTGGAACATCAATCAGAAAATAGGGTCCTGTCTTGTGGAGATGTT-- 756
consensus_12029#2      AAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACTTACCGTAT-------------- 120
                       *  *    *        ***  *  ***     *    * * ** *              

consensus_12029#0      CAAATTGCAAAATATTTTTATGCACTACCTCCAGGATGATGG 1242
consensus_12029#1      -AAATAAAAAG------------------------------- 766
consensus_12029#2      ------------------------------------------
                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)