These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1774 fasta sequence [TTCTCCCACGCGGCCGCGCCATCACGTCCGCCGCTCCCTGTCTTCCGTCCCCTCCAACACACCATGGCGCCGCCGCAGCAGCTGGTGCTCGCGGCCTCTTCCACCGACGCCGGCGTTGCCGCGTGGGACCTCCGCACGGGCGCCGAGGCCATCCGCCACCGCACCTGCGCCTCCCGCCCCCGCGCTCTCACCGTCGTCGCCGGCCGCTTCCTCGCCGCCTCCCAGGCCCCCGCCGGCAACTCAGCACCCATCCACTACTACCACTGGGACAAGCCCCAGGTGGCCGTCAAGAGCTTCCCGGTTGAGCCGATACGCGCGCTCATCGCTGATCCGGAGGGGAGCTACCTCATCGGCGGTGGGATCTCTGGCGACATATTCTTTTGGGAGGTGGCTAGTGGGGAGTTGCTTGTCCAGTGGCATGCACATTATCGTGCTGTTAGGTGCCTTGCACTCTATGACTTTTTGCTTATCTCGGGGTCTGAAGACGGTAGCATCAAAGTTTGGGATCTCCTCACGATGCTTGATGAGCAATCAAGATTGGAGGCAAAGACACAACACATATACAGCTTTAATCAGCACGCACTTCCTGTAACCGATGTTGCTTGCTGTCATGGAGCAATTGCTGTATCATCTTCAGAGGATCACACCTGTAAAATTTGGAGTCTATCCGAGGGTAGAATGCTAAGAAGCATTTCATTTCCTTCTATTACTGATTCAGTGGCGTTAGACCCAAGGAGTCATATTTTCTACGCTGGTGGTCGAGATGGAAAGATATATGTTACTGCTATGGGAATTGATGTCACCTCTCCTAGTAGTGATGATTCAACTATTAATGGGGCTTTGGATGACCATAGCAAGGCAGTAACCAGCTTAGCATCGAGTACTGATGGACTTATATTGATCTCTGGATCTGAGGATGGTAATGTTCGAGTTTGGGATACAAGAACTCAGCAAGTAATCCGAAAATTCAAACATTCCCAAGGTCCAGTGACGAATGTTCTCTTAGTAACGCCTAAACGAGTAAATCTTCCACCACTACAATCACTACGGAAAGTTTGCTCAGCAAATGGAGGATCTGAATCACGGGCTGTAATTGTGCCCCAACCTGAAAATGATGTCCAAATTTTTGGAAACTTCAGTTCCGACTTTCTGGAGCGCTGCCTGGATGCACTT---CAGCCTGGCAGTTCGTCCAGATTGTTTGAATCTGGGGCCAGTGCTCTGTATGGTGCACCAAAACAACAGGGTGTAGAATGGAGGAGTAAATACTTGGAGTTACAGGACCTCTTTGTGCGTGAGGTTCTTG-ATCAGATG-CCGTCT-CCAAAGAATACATGATA-TGCA-ACTGATTATTATGGT-CATTGCTGTCAA-TTAGGAGATTGTCATCAGTTTTAGCCAGCACATGAGTTGGTTTCTAACCGACTAGAAAACCTTGGAAGCTCTAATTCATCAGCGAAGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCCATGAGTTCATTGGAACTA-TTGTA-GCTGGAGCAAATTTTATACTAATTAGCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCACCACTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAACATCTGAAATACAAAGTAACTTGAAAAGGAGCGAGACGCAAGTGGGTTAGGGAGTAATATCTTTGTATCTTGCTGCCGGGTGAACAAAAAGGGA] [+] EMBL AK111780 [TTCTCCCACGCGGCCGCGCCATCACGTCCGCCGCTCCCTGTCTTCCGTCCCCTCCAACACACCATGGCGCCGCCGCAGCAGCTGGTGCTCGCGGCCTCTTCCACCGACGCCGGCGTTGCCGCGTGGGACCTCCGCACGGGCGCCGAGGCCATCCGCCACCGCACCTGCGCCTCCCGCCCCCGCGCTCTCACCGTCGTCGCCGGCCGCTTCCTCGCCGCCTCCCAGGCCCCCGCCGGCAACTCAGCACCCATCCACTACTACCACTGGGACAAGCCCCAGGTGGCCGTCAAGAGCTTCCCGGTTGAGCCGATACGCGCGCTCATCGCTGATCCGGAGGGGAGCTACCTCATCGGCGGTGGGATCTCTGGCGACATATTCTTTTGGGAGGTGGCTAGTGGGGAGTTGCTTGTCCAGTGGCATGCACATTATCGTGCTGTTAGGTGCCTTGCACTCTATGACTTTTTGCTTATCTCGGGGTCTGAAGACGGTAGCATCAAAGTTTGGGATCTCCTCACGATGCTTGATGAGCAATCAAGATTGGAGGCAAAGACACAACACATATACAGCTTTAATCAGCACGCACTTCCTGTAACCGATGTTGCTTGCTGTCATGGAGCAATTGCTGTATCATCTTCAGAGGATCACACCTGTAAAATTTGGAGTCTATCCGAGGGTAGAATGCTAAGAAGCATTTCATTTCCTTCTATTACTGATTCAGTGGCGTTAGACCCAAGGAGTCATATTTTCTACGCTGGTGGTCGAGATGGAAAGATATATGTTACTGCTATGGGAATTGATGTCACCTCTCCTAGTAGTGATGATTCAACTATTAATGGGGCTTTGGATGACCATAGCAAGGCAGTAACCAGCTTAGCATCGAGTACTGATGGACTTATATTGATCTCTGGATCTGAGGATGGTAATGTTCGAGTTTGGGATACAAGAACTCAGCAAGTAATCCGAAAATTCAAACATTCCCAAGGTCCAGTGACGAATGTTCTCTTAGTAACGCCTAAACGAGTAAATCTTCCACCACTACAATCACTACGGAAAGTTTGCTCAGCAAATGGAGGATCTGAATCACGGGCTGTAATTGTGCCCCAACCTGAAAATGATGTCCAAATTTTTGGAAACTTCAGTTCCGACTTTCTGGAGCGCTGCCTGGATGCACTT CAGCCTGGCAGTTCGTCCAGATTGTTTGAATCTGGGGCCAGTGCTCTGTATGGTGCACCAAAACAACAGGGTGTAGAATGGAGGAGTAAATACTTGGAGTTACAGGACCTCTTTGTGCGTGAGGTTCTTG ATCAGATG CCGTCT CCAAAGAATACATGATA TGCA ACTGATTATTATGGT CATTGCTGTCAA TTAGGAGATTGTCATCAGTTTTAGCCAGCACATGAGTTGGTTTCTAACCGACTAGAAAACCTTGGAAGCTCTAATTCATCAGCGAAGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCCATGAGTTCATTGGAACTA TTGTA GCTGGAGCAAATTTTATACTAATTAGCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCACCACTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAACATCTGAAATACAAAGTAACTTGAAAAGGAGCGAGACGCAAGTGG ] [+] EMBL OS1006A [ GGTCCAGTGACGAATGTTCTCTTAGTAACGCCTAAACGAGTAAATCTTCCACCACTACAATCACTACGGAAAGTTTGCTCAGCAAATGGAGGATCTGAATCACGGGCTGTAATTGTGCCCCAACCTGAAAATGATGTCCAAATTTTTGGAAACTTCAGTTCCGACTTTCTGGAGCGCTGCCTGGATGCACTTCAGCAGCCTGGCAGTTCGTCCAGATTGTTTGAATCTGGGGCCAGTGCTCTGTATGGTGCACCAAAACAACAGGGTGTAGAATGGAGGAGTAAATACTTGGNGTTACAGGACCTCTTTGTGCGTGAGGTTCTTG ATCAGATG CCGTCT NCAAAGAATACATGATA TGCA ACTGATTATTATGGT CATTGCTGTCAA TTAGGAGATTGTCATCAGTTTTAGCCAGCACATGAGTTGGGTTCTAACCGACTAGAAAACCTTGG AGGTCTAATTCATCAGCG AGTGTAACATCAA TTTTGCAAATTATGAGTGGAGGGGTGAGCAGGGGGC TTNAAT CCCCATG GGTCATGGG CTA TT NA GGTGG GCAA TTTAT CNNA TAGGNCTTCCGG CT AGGTCCT AAAG GNACTTgg ] [+] EMBL C26985 [ AATNATGTCCAAATTTTTGGAAACTTCAGTTCCGACTTTTTGGAGCGNTGCCTGGATGCACTT CAGNCTGGCAGTTCGTCCAGATTGTTTGANTCTGGGGCCAGTGCTCTGTATGGTGCACCAAAACAACAGGGTGTAGAATGGAGGAGTAAATACTTGGAGTTACAGGACCTCTTTNTGCGTGAGGTTCTTG ATCAGATG CCGTCT CCAAAGANTACATGATA TGCA ACTGATTATNATGGT CATTGCTGTCAA TTAGGAGATTGTCATCAGTTTTAGCCAGCACATGAGTTGGTTTCTAACCGACTAGAAAACCTTGGAAGCTCTAATTCATCAGCG AGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCCATGAGTTCATTGGGACTATTTGTAGGCTGGNGCAAATTTTATAC ] [-] EMBL CB653209 [ AGATTGTTTGAATCTGGGGCCAGTGCTCTGTATGGTGCACCAAAACAACAGGGTGTAGAATGGAGGAGTAAATACTTGGAGTTACAGGACCTCTTTGTGCGTGAGGTTCTTG ATCAGATG CCGTCT CCAAAGAATACATGATA TGCA ACTGATTATTATGGT CATTGCTGTCAA TTAGGAGATTGTCATCAGTTTTAGCCAGCACATGAGTTGGTTTCTAACCGAGTAGAAAACCTTGGAAGCTCTAATTCATCAGCGAAGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCCATGAGTTCATTGGAACTA TTGTA GCTGGAGCAAATTTTATAGTAATTAGCATTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCACCACTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAACATGTGAAATACAAAGTAACTTGAAAAGGAGCGAGACGCAAGTGGGTTAGGGAGTAATATCTTTGTATCTTGCTGCCGGGTGAACAAAAAGGGA] [+] EMBL C98193 [ TTCTTGAACCAGATGCCCGTCTCCCAAAGAATACATGATATTGCANCCTGNTTATTATGGTCCATTGNTGTCAATTTAGGAGATTGTCATCAGTTTTAGCCAGCACATGAGTTGGTTTCTAACCGACTAGAAAACCTTGGAAGCTCTAATTCATCAGCGAAGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCCATGAGTTCATTGGAACTA TTGTA GCTGGAGCAAATTTTATACTAATTAGCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCACCACTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAA ] consensusID : consensus_12048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1037 fasta sequence [TCTCCCACGCGGCCGCGCCATCACGTCCGCCGCTCCCTGTCTTCCGTCCCCTCCAACACACCATGGCGCCGCCGCAGCAGCTGGTGTTCGCGGCCTCTTCCACCGACGCCGGCGTTGCCGCGTGGGACCTCCGCACGGGCGCCGAGGCCATCCGCCACCGCACCTGCGCCTCCCGCCCCCGCGCTCTCACCGTCGTCGCCGGCCGCTTCCTCGCCGCCTCCCAGGCCCCCGCCGGCAACTCAGCACCCATCCACTACTACCACTGGGACAAGCCCCAGGTGGCCGTCAAGAGCTTCCCGGTTGAGCCGATACGCGCGCTCATCGCTGATCCGGAGGGGAGCTACCTCATCGGCGGTGGGATCTCTGGCGACATATTCTTTTGGGAGGTGGCTAGTGGGGAGTTGCTTGTCCAGTGGCATGCACATTATCGTGCTGTTAGGTGCCTTGCACTCTATGACTTTTTGCTTGTCTCGGGGTCTGAAGACGGTAGCATCAAAGTTTGGGATCTCCTCACGATGCTTGATGAGCAATCAAGATTGGAGGCAAAGACACAACACATATACAGCTTTAATCAGCACGCACTTCCTGTAACCGATGTTGCTTGCTGTCATGGAGCAATTGCTGTATCATCTTCAGAGGATCACACCTGTAAAATTTGGAGTCTATCCGAGGGTAGAATGCTAAGAAGCATTTCATTTCCTTCTATTACTGATTCAGTGGCGTTAGACCCAAGGAGTCATATTTTCTACGCTGGTGGTCGAGATGGAAAGATATATGTTACTGCTATGGGAATTGATGTCACCTCTCCTAGTAGTGATGATTCAACTATTAATGGGGCTTTGGATGACCATAGGTTTGCCTACTCCTTGCTTTCATTAGCACCTCTTATTTATCCTGTGATGTAAACAGCTTCAATATACAAGTTAGAGTTTGATATCTTGTAGTAGTAGAGTGGTTATAAACCTATCTTACCTGTTCATGCTTTAACTTTGGTTGTATCCATCCTAGCTCGACCAGTTTGTTTTTAATGAAAACAT] [+] EMBL AK108466 [TCTCCCACGCGGCCGCGCCATCACGTCCGCCGCTCCCTGTCTTCCGTCCCCTCCAACACACCATGGCGCCGCCGCAGCAGCTGGTGTTCGCGGCCTCTTCCACCGACGCCGGCGTTGCCGCGTGGGACCTCCGCACGGGCGCCGAGGCCATCCGCCACCGCACCTGCGCCTCCCGCCCCCGCGCTCTCACCGTCGTCGCCGGCCGCTTCCTCGCCGCCTCCCAGGCCCCCGCCGGCAACTCAGCACCCATCCACTACTACCACTGGGACAAGCCCCAGGTGGCCGTCAAGAGCTTCCCGGTTGAGCCGATACGCGCGCTCATCGCTGATCCGGAGGGGAGCTACCTCATCGGCGGTGGGATCTCTGGCGACATATTCTTTTGGGAGGTGGCTAGTGGGGAGTTGCTTGTCCAGTGGCATGCACATTATCGTGCTGTTAGGTGCCTTGCACTCTATGACTTTTTGCTTGTCTCGGGGTCTGAAGACGGTAGCATCAAAGTTTGGGATCTCCTCACGATGCTTGATGAGCAATCAAGATTGGAGGCAAAGACACAACACATATACAGCTTTAATCAGCACGCACTTCCTGTAACCGATGTTGCTTGCTGTCATGGAGCAATTGCTGTATCATCTTCAGAGGATCACACCTGTAAAATTTGGAGTCTATCCGAGGGTAGAATGCTAAGAAGCATTTCATTTCCTTCTATTACTGATTCAGTGGCGTTAGACCCAAGGAGTCATATTTTCTACGCTGGTGGTCGAGATGGAAAGATATATGTTACTGCTATGGGAATTGATGTCACCTCTCCTAGTAGTGATGATTCAACTATTAATGGGGCTTTGGATGACCATAGGTTTGCCTACTCCTTGCTTTCATTAGCACCTCTTATTTATCCTGTGATGTAAACAGCTTCAATATACAAGTTAGAGTTTGATATCTTGTAGTAGTAGAGTGGTTATAAACCTATCTTACCTGTTCATGCTTTAACTTTGGTTGTATCCATCCTAGCTCGACCAGTTTGTTTTTAATGAAAACAT] consensusID : consensus_12048#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [GACCTTCACTTCCGCCCTTTTGGAGCCCTAGCCTGGATGCACTTCAGCCTGGCAGTTGGTCCAAATTGTTTAAATCTGGGGGCCAGGGCTCTGTATGGTGCCCCAAAACACCAGGGTGTAGAATGGAGGAGTAAATCCTTGGAGTTACCGGGCCTTTTTGTGCGTGAGGTTTTTGATCAGATGCCGTCTCCAAAGAATACCTGATATGCAACTGATTCTTATGGTCATTGCTGTCAATTAGGAGATTGTCATCAGTTTTAGCCAGCACATGAGTTGGTTTCTAACCGACTAGAAAACCTTGGAAGCTCTAATTCATCAGCGAAGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCCTGAGTTCATTGGAACTATTCTAGCTGGAGCAAATTTTATACTAATTAGCCCTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCCCCCCTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAACATTTGGAATACAAAGTAACTTGAAAAGGAGCGAGACGCAAGTGGGTTATGGAGTAATATCTTTGTATCTTGCTACAGAGTAATTATATTCGATGGAAACTACTTTGTGTGGATCCAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA760676 [GACCTTCACTTCCGCCCTTTTGGAGCCCTAGCCTGGATGCACTTCAGCCTGGCAGTTGGTCCAAATTGTTTAAATCTGGGGGCCAGGGCTCTGTATGGTGCCCCAAAACACCAGGGTGTAGAATGGAGGAGTAAATCCTTGGAGTTACCGGGCCTTTTTGTGCGTGAGGTTTTTGATCAGATGCCGTCTCCAAAGAATACCTGATATGCAACTGATTCTTATGGTCATTGCTGTCAATTAGGAGATTGTCATCAGTTTTAGCCAGCACATGAGTTGGTTTCTAACCGACTAGAAAACCTTGGAAGCTCTAATTCATCAGCGAAGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCCTGAGTTCATTGGAACTATTCTAGCTGGAGCAAATTTTATACTAATTAGCCCTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCCCCCCTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAACATTTGGAATACAAAGTAACTTGAAAAGGAGCGAGACGCAAGTGGGTTATGGAGTAATATCTTTGTATCTTGCTACAGAGTAATTATATTCGATGGAAACTACTTTGTGTGGATCCAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12048#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence [AGGTCATAAGGGCCCCCCCCAGGGGGGGAGGTGTAATCCCGGGGGGGACGGTGCCCCCCCTAAAGGTGATGTCCGAGTTTGGGAAACTTCAGGTCGGCTGTTGCGGGGGCGCCCGGATGCATTTAAGGCTGCCAGTTCGTCCAGATTGTTGAATCTGGGGCCCAGTGCTCTGTATGGTGCCCCAAAACAACAGGGTGTAGAATGGAGGAGTAAATACTTGGAGTTACAGGGCCTCTTTGTGCGTGAGATTCTTGATCAGAAGCCGTCTCCAAAGAATACCTGATATGCAACTGATTATTATGGTCATTGCTGTCAATTAGGAGATTGTCATCAGTTTTAGCCAGCCCATGAGTTGGTTTTTAACCGACTAGAAAACCTTGGAAGCTTTAATTTATCAGCGAAGTGTAACATCAATTTTTGCAATTTTTGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCATGAGTTCATTGGAACTATTTTAGCTGGAGCAAATTTTATACTAATTAGCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCCCCCCTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAACATTTGAAATACAAAGTAACTTGAAAAAAAAAAAAAA] [-] EMBL CA761480 [AGGTCATAAGGGCCCCCCCCAGGGGGGGAGGTGTAATCCCGGGGGGGACGGTGCCCCCCCTAAAGGTGATGTCCGAGTTTGGGAAACTTCAGGTCGGCTGTTGCGGGGGCGCCCGGATGCATTTAAGGCTGCCAGTTCGTCCAGATTGTTGAATCTGGGGCCCAGTGCTCTGTATGGTGCCCCAAAACAACAGGGTGTAGAATGGAGGAGTAAATACTTGGAGTTACAGGGCCTCTTTGTGCGTGAGATTCTTGATCAGAAGCCGTCTCCAAAGAATACCTGATATGCAACTGATTATTATGGTCATTGCTGTCAATTAGGAGATTGTCATCAGTTTTAGCCAGCCCATGAGTTGGTTTTTAACCGACTAGAAAACCTTGGAAGCTTTAATTTATCAGCGAAGTGTAACATCAATTTTTGCAATTTTTGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCATGAGTTCATTGGAACTATTTTAGCTGGAGCAAATTTTATACTAATTAGCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCCCCCCTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAACATTTGAAATACAAAGTAACTTGAAAAAAAAAAAAAA] [-] EMBL CA761442 [AGGTCATAAGGGCCCCCCCCAGGGGGGGAGGTGTAATCCCGGGGGGGACGGTGCCCCCCCTAAAGGTGATGTCCGAGTTTGGGAAACTTCAGGTCGGCTGTTGCGGGGGCGCCCGGATGCATTTAAGGCTGCCAGTTCGTCCAGATTGTTGAATCTGGGGCCCAGTGCTCTGTATGGTGCCCCAAAACAACAGGGTGTAGAATGGAGGAGTAAATACTTGGAGTTACAGGGCCTCTTTGTGCGTGAGATTCTTGATCAGAAGCCGTCTCCAAAGAATACCTGATATGCAACTGATTATTATGGTCATTGCTGTCAATTAGGAGATTGTCATCAGTTTTAGCCAGCCCATGAGTTGGTTTTTAACCGACTAGAAAACCTTGGAAGCTTTAATTTATCAGCGAAGTGTAACATCAATTTTTGCAATTTTTGAGTGGAGGGGTGAGCAGGGGGCTTTGCATCCCCATGAGTTCATTGGAACTATTTTAGCTGGAGCAAATTTTATACTAATTAGCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTTGTGCTTCTCTGGTTCCCCCCCTGAATTTATGTGTACTTTGTGTCTTTGTATTGAGCCTTATGGTAGGTAACATGTTACAGAAAAACATTTGAAATACAAAGTAACTTGAAAAAAAAAAAAAA] consensusID : consensus_12048#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence [ACGAGCTCGTGCCGAATTCNGCNGAAAGANGGGTGAGCATGGGGNTTTGCATCCCCATGAGTTCATNGGNAACTATTCTACCTGGAGCAAATTTTATNCTAATTATCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTNGTGCTTCTCTGGTTCCANCACTGAATTTATGTGTACTTTGTGTCTTTGTATTGANCCNTATNGTAGGTNACATGTTACNGAAAAACATCTGAAATACAAAGTAACTTGAAAAAAAAA] [+] EMBL BE228997 [ACGAGCTCGTGCCGAATTCNGCNGAAAGANGGGTGAGCATGGGGNTTTGCATCCCCATGAGTTCATNGGNAACTATTCTACCTGGAGCAAATTTTATNCTAATTATCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTNGTGCTTCTCTGGTTCCANCACTGAATTTATGTGTACTTTGTGTCTTTGTATTGANCCNTATNGTAGGTNACATGTTACNGAAAAACATCTGAAATACAAAGTAACTTGAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 TTCTCCCACGCGGCCGCGCCATCACGTCCGCCGCTCCCTGTCTTCCGTCCCCTCCAACAC 60 consensus_12048#1 ------------------------------------------------------------ consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 ACCATGGCGCCGCCGCAGCAGCTGGTGCTCGCGGCCTCTTCCACCGACGCCGGCGTTGCC 120 consensus_12048#1 ------------------------------------------------------------ consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 GCGTGGGACCTCCGCACGGGCGCCGAGGCCATCCGCCACCGCACCTGCGCCTCCCGCCCC 180 consensus_12048#1 ------------------------------------------------------------ consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 CGCGCTCTCACCGTCGTCGCCGGCCGCTTCCTCGCCGCCTCCCAGGCCCCCGCCGGCAAC 240 consensus_12048#1 ------------------------------------------------------------ consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 TCAGCACCCATCCACTACTACCACTGGGACAAGCCCCAGGTGGCCGTCAAGAGCTTCCCG 300 consensus_12048#1 ------------------------------------------------------------ consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 GTTGAGCCGATACGCGCGCTCATCGCTGATCCGGAGGGGAGCTACCTCATCGGCGGTGGG 360 consensus_12048#1 ------------------------------------------------------------ consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 ATCTCTGGCGACATATTCTTTTGGGAGGTGGCTAGTGGGGAGTTGCTTGTCCAGTGGCAT 420 consensus_12048#1 ------------------------------------------------------------ consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 GCACATTATCGTGCTGTTAGGTGCCTTGCACTCTATGACTTTTTGCTTATCTCGGGGTCT 480 consensus_12048#1 ------------------------------------------------------------ consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 GAAGACGGTAGCATCAAAGTTTGGGATCTCCTCACGATGCTTGATGAGCAATCAAGATTG 540 consensus_12048#1 ------------------------------------------------------------ consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 GAGGCAAAGACACAACACATATACAGCTTTAATCAGCACGCACTTCCTGTAACCGATGTT 600 consensus_12048#1 ------------------------------------------------------------ consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 GCTTGCTGTCATGGAGCAATTGCTGTATCATCTTCAGAGGATCACACCTGTAAAATTTGG 660 consensus_12048#1 ------------------------------------------------------------ consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 AGTCTATCCGAGGGTAGAATGCTAAGAAGCATTTCATTTCCTTCTATTACTGATTCAGTG 720 consensus_12048#1 ------------------------------------------------------------ consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 GCGTTAGACCCAAGGAGTCATATTTTCTACGCTGGTGGTCGAGATGGAAAGATATATGTT 780 consensus_12048#1 ---------------------------------------------------TCTCCCACG 9 consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 ACTGCTATGGGAATTGATGTCACCTCTCCTAGTAGTGATGATTCAACTATTAATGGGGCT 840 consensus_12048#1 CGGCCGCGCCATCACGTCCGCCGCTCCCTGTCTTCCGTCCCCTCCAACACACCATGGCGC 69 consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 TTGGATGACCATAGCAAGGCAGTAACCAGCTTAGCATCGAGTACTGATGGACTTATATTG 900 consensus_12048#1 CGCCGCAGCAGCTGGTGTTCGCGGCCTCTTCCACCGACGCCGGCGTTGCCGCGTGGGACC 129 consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 ATCTCTGGATCTGAGGATGGTAATGTTCGAGTTTGGGATACAAGAACTCAGCAAGTAATC 960 consensus_12048#1 TCCGCACGGGCGCCGAGGCCATCCGCCACCGCACCTGCGCCTCCCGCCCCCGCGCTCTCA 189 consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 CGAAAATTCAAACATTCCCAAGGTCCAGTGACGAATGTTCTCTTAGTAACGCCTAAACGA 1020 consensus_12048#1 CCGTCGTCGCCGGCCGCTTCCTCGCCGCCTCCCAGGCCCCCGCCGGCAACTCAGCACCCA 249 consensus_12048#3 -------------------------AGGTCATAAGGGCCCCCCCCAGGGGGGGAGGTGTA 35 consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ------------------------------------------------------------ consensus_12048#0 GTAAATCTTCCACCACTACAATCACTACGGAAAGTTTGCTCAGCAAATGGAGGATCTGAA 1080 consensus_12048#1 TCCACTACTACCACTGGGACAAGCCCCAGGTGGCCGTCAAGAGCTTCCCGGTTGAGCCGA 309 consensus_12048#3 ATCCCGGGGGGGACGGTGCCCCC-CCTAAAGGTGATGTCCGAGTTTG-GGAAACTTCAGG 93 consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 --------------------------------------------------GACCTTCACT 10 consensus_12048#0 TCACGGGCTGTAATTGTGCCCCAACCTGAAAATGATGTCCAAATTTTTGGAAACTTCAGT 1140 consensus_12048#1 TACGCGCGCTCATCGCTGATCCGGAGGGGAGCTACCTCATCGGCGGTGGGATCTCTGGCG 369 consensus_12048#3 TCGGCTGTTGCGGGGGC---GCCCGGATGCATTTAAGGCTGCCAGTTCGTCCAGATTGTT 150 consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 TCCGCCCTTTTGGAGCCCTAGCCTGGATGCACTTCAGCCTGGCAGTTGGTCCAAATTGTT 70 consensus_12048#0 TCCGACTTTCTGGAGCGCT-GCCTGGATGCACTTCAGCCTGGCAGTTCGTCCAGATTGTT 1199 consensus_12048#1 ACATATTCTTTTGGGAGGTGGCTAGTGGGGAGTTGCTTGTCCAGTGGCATGCACATTATC 429 consensus_12048#3 -GAATCTGGGGCCCAGTGCTCTGTATGGTGCCCCAAAACAACAGGGTGTAGAATGGAGGA 209 consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 TAAATCTGGGGGCCAGGGCTCTGTATGGTGCCCCAAAACACCAGGGTGTAGAATGGAGGA 130 consensus_12048#0 TGAATCTGGGG-CCAGTGCTCTGTATGGTGCACCAAAACAACAGGGTGTAGAATGGAGGA 1258 consensus_12048#1 GTGCTGTTAGGTGCCTTGCACTCTATGACTTTTTGCTTGTCTCGGGGTCTGAAGACGGTA 489 consensus_12048#3 GTAAATACTTGGAGTTACAGGGCCTCTTTGTGCGTGAGATTCTTGATCAGAAGCCGTCTC 269 consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 GTAAATCCTTGGAGTTACCGGGCCTTTTTGTGCGTGAGGTTTTTGATCAGATGCCGTCTC 190 consensus_12048#0 GTAAATACTTGGAGTTACAGGACCTCTTTGTGCGTGAGGTTCTTGATCAGATGCCGTCTC 1318 consensus_12048#1 GCA-----TCAAAGTTTGGGATCTCCTCACGATGCTTGATGAGCAATCAAGATTGGAGGC 544 consensus_12048#3 CAAAGAATACCTGATATGCAACTGATTATTATGGTCATTGCTGTCAATTAGGA--GATTG 327 consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 CAAAGAATACCTGATATGCAACTGATTCTTATGGTCATTGCTGTCAATTAGGA--GATTG 248 consensus_12048#0 CAAAGAATACATGATATGCAACTGATTATTATGGTCATTGCTGTCAATTAGGA--GATTG 1376 consensus_12048#1 AAAGACACAACACATATACAGCTTTAATCAGCACGCACTTCCTGTAACCGATGTTGCTTG 604 consensus_12048#3 TCATCA-GTTTTAGCCAGCCCATGAGTTGGTTTTTAACCGACTAGAAAACCTTGGAAGCT 386 consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 TCATCA-GTTTTAGCCAGCACATGAGTTGGTTTCTAACCGACTAGAAAACCTTGGAAGCT 307 consensus_12048#0 TCATCA-GTTTTAGCCAGCACATGAGTTGGTTTCTAACCGACTAGAAAACCTTGGAAGCT 1435 consensus_12048#1 CTGTCATGGAGCAATTGCTGTATCATCTTCAGAGGATCACACCTGTAAAATTTGGAGTCT 664 consensus_12048#3 TTAATTTATCAGCGAAGTGTAACATCAATTTTTGCAATTTTTGAGTGGAGGGGTGAGCAG 446 consensus_12048#4 --------------------ACGAGCTCGTGCCGAATTCNGCNGAAAGANGGGTGAGCAT 40 consensus_12048#2 CTAATTCATCAGCGAAGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAG 367 consensus_12048#0 CTAATTCATCAGCGAAGTGTAACATCAATTTTTGCAATTTATGAGTGGAGGGGTGAGCAG 1495 consensus_12048#1 ATCCGAGGGTAGAATGCTAAGAAGCATTTCATTTCCTTCTATTACTGATTCAGTGGCGTT 724 * *** consensus_12048#3 GGGGCTTTGCATCCCC-ATGAGTTCATTGGAA-CTATTTTAGCTGGAGCAAATTTTATAC 504 consensus_12048#4 GGGGNTTTGCATCCCC-ATGAGTTCATNGGNAACTATTCTACCTGGAGCAAATTTTATNC 99 consensus_12048#2 GGGGCTTTGCATCCCC-CTGAGTTCATTGGAA-CTATTCTAGCTGGAGCAAATTTTATAC 425 consensus_12048#0 GGGGCTTTGCATCCCCCATGAGTTCATTGGAA-CTATTGTAGCTGGAGCAAATTTTATAC 1554 consensus_12048#1 AGACCCAAGGAGTCATATTTTCTACGCTGG----TGGTCGAGATGGAAAGATATATGTTA 780 * * * * * * * ** * * * **** * * * * consensus_12048#3 TAATTAGCACTTCCGGCCTCAGCTCCTCAAA-AGTG-TACTTTGTGCTTCTCTGGTTCCC 562 consensus_12048#4 TAATTATCACTTCCGGCCTCAGCTCCTCAAA-AGTG-TACTTNGTGCTTCTCTGGTTCCA 157 consensus_12048#2 TAATTAGCCCTTCCGGCCTCAGCTCCTCAAA-AGTG-TACTTTGTGCTTCTCTGGTTCCC 483 consensus_12048#0 TAATTAGCACTTCCGGCCTCAGCTCCTCAAA-AGTG-TACTTTGTGCTTCTCTGGTTCCA 1612 consensus_12048#1 CTGCTATGGGAATTGATGTCACCTCTCCTAGTAGTGATGATTCAACTATTAATGGGGCTT 840 ** * *** *** * * **** * ** * *** * consensus_12048#3 CCCCTGAATTTATGTGTACTTTGTGTCT--TTGTATTGAGCCTTATGGTAGGTAACATGT 620 consensus_12048#4 NCACTGAATTTATGTGTACTTTGTGTCT--TTGTATTGANCCNTATNGTAGGTNACATGT 215 consensus_12048#2 CCCCTGAATTTATGTGTACTTTGTGTCT--TTGTATTGAGCCTTATGGTAGGTAACATGT 541 consensus_12048#0 CCACTGAATTTATGTGTACTTTGTGTCT--TTGTATTGAGCCTTATGGTAGGTAACATGT 1670 consensus_12048#1 TGGATGACCATAGGTTTGCCTACTCCTTGCTTTCATTAGCACCTCT--TATTTATCCTGT 898 *** ** ** * * * * * ** *** * * * ** * * *** consensus_12048#3 TACAGAAAAACATTTGAAATACAAAGTAA--CTTGAAAAAAAAAAAAAA----------- 667 consensus_12048#4 TACNGAAAAACATCTGAAATACAAAGTAA--CTTGAAAAAAAAA---------------- 257 consensus_12048#2 TACAGAAAAACATTTGGAATACAAAGTAA--CTTGAAAAGGAGCGAGACGCAAGTGGGTT 599 consensus_12048#0 TACAGAAAAACATCTGAAATACAAAGTAA--CTTGAAAAGGAGCGAGACGCAAGTGGGTT 1728 consensus_12048#1 GATGTAAACAGCTTCAATATACAAGTTAGAGTTTGATATCTTGTAGTAGTAGAGTGGTTA 958 * *** * * ****** ** **** * consensus_12048#3 ------------------------------------------------------------ consensus_12048#4 ------------------------------------------------------------ consensus_12048#2 ATGGAGTAATATCTTTGTATCTTGCTACAGAGTAATTATATTCGATGGAAACTACTTTGT 659 consensus_12048#0 AGGGAGTAATATCTTTGTATCTTGCTGCCGGGTGAACAAAAAGGGA-------------- 1774 consensus_12048#1 TAAACCTATCTTACCTGTTCATGCTTTAACTTTGGTTGTATCCATCCTAGCTCGACCAGT 1018 consensus_12048#3 ------------------------------ consensus_12048#4 ------------------------------ consensus_12048#2 GTGGATCCAAAAAAAAAAAAAAAAAAAAAA 689 consensus_12048#0 ------------------------------ consensus_12048#1 TTGTTTTTAATGAAAACAT----------- 1037 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||