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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12052#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 821 fasta sequence
[CGCGGCGAGGAGAAAGAAAAAAAAAATCCCCAAATCGAAAGCCGCGAGAGACAGAAACCCTAGCGGAGAGGAGGGCGGCGATGGCGGCGGTGAGCTTGAGGAAGAGCAACGCGAGGCTGCCGCCGGAGGTGAACAGGGTGCTGTACGTGC-GGAACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGCGCGATCCGGCAGATCCGGCTGGGGAACGCCAAGGACACCAGGGGCACGGCCTTCGTCGTC-TACGAGGACATCTACGACGCCAAGAACGCCGTC-GACCACCT-CTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCA-AGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCA-ATAGTTTCCTATCAATGAAAATCACA-CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAGTTGAATTGTCCTGTGTTAAAAAGCCCCTTGAGTTGATATGCAATTATGTGCTCAGAATTAAGTTGTGGCTTTGCACCTCTAATATGTGTTACTTATTGGTGAGCTTATAATCTATGGATGGATGTAGTCAAAATATGAAAGCATTTT]
[+] EMBL AK121661 [CGCGGCGAGGAGAAAGAAAAAAAAAATCCCCAAATCGAAAGCCGCGAGAGACAGAAACCCTAGCGGAGAGGGGGGCGGCGATGGCGGCGGTGAGCTTGAGGAAGAGCAACGCGAGGCTGCCGCCGGAGGTGAACAGGGTGCTGTACGTGC GGAACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGCGCGATCCGGCAGATCCGGCTGGGGAACGCCAAGGACACCAGGGGCACGGCCTTCGTCGTC TACGAGGACATCTACGACGCCAAGAACGCCGTC GACCACCT CTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCA AGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCA ATAGTTTCCTATCAATGAAAATCACA CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTAC ]
[+] EMBL AK059288 [ GAGGAGAAAGAAAAAAAAAATCCCCAAATCGAAAGCCGCGAGAGACAGAAACCCTAGCGGAGAGGAGGGCGGCGATGGCGGCGGTGAGCTTGAGGAAGAGCAACGCGAGGCTGCCGCCGGAGGTGAACAGGGTGCTGTACGTGC GGAACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGCGCGATCCGGCAGATCCGGCTGGGGAACGCCAAGGACACCAGGGGCACGGCCTTCGTCGTC TACGAGGACATCTACGACGCCAAGAACGCCGTC GACCACCT CTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCA AGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCA ATAGTTTCCTATCAATGAAAATCACA CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAGTTGAATTGTCCTGTGTTTTTAGGCCCCTTGAGTTGATATGCAATTATGTGCTCAGAATTAAGTTGTGGCTTTGCACCTCTAATATGTGTTACTTATTGGTGAGCTTATAATCTATGGATGGATGTAGTCAAAATATGAAAGCATTTT]
[+] EMBL AU174529 [ ATCCCCAAATCGAAAGCCGCGAGAGACAGAAACCCTAGCGGAGAGGAGGGCGGCGATGGCGGCGGTGAGCTTGAGGAAGAGCAACGCGAGGCTGCCGCCGGAGGTGAACAGGGTGCTGTACGTGCGGGAACCTGCCGTTCAACATCTCGAGCGAGGAGATGTACGACATCTTCGGCAAGTACGGCGCGATCCGGCAGATCCGGCTGGGGAACGCCAAGGACACCAGGGGCACGGCCTTCGTCGTC TACGAGGACATCTACGACGCCAAGAACGCCGTC GACCACCT CTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCA AGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCC ]
[+] EMBL BI801098 [ gtCGACATCTTC GCAAGTACGGCGCGATCCGCCAGATCC GCTGGGGAAC CCAAGGACACCAGGGGCACGGCCTTCGTCGTCGTACGAGGACATTTACGACGCCAAGAACGCCGTCGGACCACCTGCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCACAGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTT CAGTTTGTGCTCGTGTGTTGTCTGTGCACATAGTTTCCTATCAATGAAAATCACACCAGCGGTATGTACTTTGACTGAAAGAACCATATGCCATGTGTACTTTGACTGGGAaaaaaaaaa ]
[+] EMBL BI800368 [ CGCGATCCGCCAGATCC GCTGGGG ACGCCAAGGACACCAGGGGCACGCCCTTCGTCGTC TACGAGGACATCTACGACGCCAAGAACGCCGTC GACCACCT CTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCA AGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTT CAGTTTGTGCTCGTGTGTTGTCTGTGCA ATAGTTTCCTATCAATGAAAATCACA CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCaaaaaaa ]
[+] EMBL CF327086 [ gagtagaaACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGCTGTCTGTGCA ATAGTTTCCTATCAATGAAAATCACA CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAGTTGAATTGTCCTGTGTTAAAAA ]
[-] EMBL CF327085 [ GAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGCTGTCTGTGCA ATAGTTTCCTATCAATGAAAATCACA CAGCGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAGTTGAATTGTCCTGTGTTAAAAAa ]
consensusID : consensus_12052#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 452 fasta sequence
[CACGGCCTTCGTCGTCTACGAGGACATCTACGACGCCAAGAACGCCGTCGACCACCTCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCAANATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAANACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACAGCGGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAAAAAAAAAAAAAAAAAAAAAAAACTCGCGAC]
[+] EMBL AU174530 [CACGGCCTTCGTCGTCTACGAGGACATCTACGACGCCAAGAACGCCGTCGACCACCTCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGCCGGCCAANATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAANACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACAGCGGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTGGTAGCATCTAAAAAAAAAAAAAAAAAA ]
[+] EMBL CA756828 [ ACTACCAGCCGGCCAAGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGCAGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTCATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACAGC GGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTGATTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGCGAC]
consensusID : consensus_12052#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 134 fasta sequence
[ATCAGAAATCAGTTCTTAAATACATGTACTAGCTGAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACAGCGGTATGTAAAAA]
[+] EMBL AU173540 [ATCAGAAATCAGTTCTTAAATACATGTACTAGCTGAAGAATCGGGAATTGCTTATTCAATCTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACAGCGGTATGTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12052#0 CGCGGCGAGGAGAAAGAAAAAAAAAATCCCCAAATCGAAAGCCGCGAGAGACAGAAACCC 60
consensus_12052#1 ------------------------------------------------------------
consensus_12052#2 ------------------------------------------------------------
consensus_12052#0 TAGCGGAGAGGAGGGCGGCGATGGCGGCGGTGAGCTTGAGGAAGAGCAACGCGAGGCTGC 120
consensus_12052#1 ------------------------------------------------------------
consensus_12052#2 ------------------------------------------------------------
consensus_12052#0 CGCCGGAGGTGAACAGGGTGCTGTACGTGCGGAACCTGCCGTTCAACATCTCGAGCGAGG 180
consensus_12052#1 ------------------------------------------------------------
consensus_12052#2 ------------------------------------------------------------
consensus_12052#0 AGATGTACGACATCTTCGGCAAGTACGGCGCGATCCGGCAGATCCGGCTGGGGAACGCCA 240
consensus_12052#1 ------------------------------------------------------------
consensus_12052#2 ------------------------------------------------------------
consensus_12052#0 AGGACACCAGGGGCACGGCCTTCGTCGTCTACGAGGACATCTACGACGCCAAGAACGCCG 300
consensus_12052#1 -------------CACGGCCTTCGTCGTCTACGAGGACATCTACGACGCCAAGAACGCCG 47
consensus_12052#2 ------------------------------------------------------------
consensus_12052#0 TCGACCACCTCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGC 360
consensus_12052#1 TCGACCACCTCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTCTACTACCAGC 107
consensus_12052#2 ------------------------------------------------------------
consensus_12052#0 CGGCCAAGATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGC 420
consensus_12052#1 CGGCCAANATGTCCAAGAAGTCGGACGTCAAGAAGAAGGAGGAGGAGATCACCAGGCTGC 167
consensus_12052#2 ------------------------------------------------------------
consensus_12052#0 AGGAGAAGTATGGCCTCGGCTCCAAGACGCCTTCATCCGCCCCCGACGCGTAGGATTCTC 480
consensus_12052#1 AGGAGAAGTATGGCCTCGGCTCCAANACGCCTTCATCCGCCCCCGACGCGTAGGATTCTC 227
consensus_12052#2 ------------------------------------------------------------
consensus_12052#0 ATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAAT 540
consensus_12052#1 ATCAGAAATCAGTTCTTCAGCTAGTACATGTATTTAAGAATCGGGAATTGCTTATTCAAT 287
consensus_12052#2 ATCAGAAATCAGTTCTTAAATACATGTACTAGCTGAAGAATCGGGAATTGCTTATTCAAT 60
***************** * * * * *************************
consensus_12052#0 CTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACA 600
consensus_12052#1 CTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACA 347
consensus_12052#2 CTTGCAGTTTGTGCTCGTGTGTTGTCTGTGCAATAGTTTCCTATCAATGAAAATCACACA 120
************************************************************
consensus_12052#0 GCGG-TATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTG 659
consensus_12052#1 GCGGGTATGTACTTTGACTGAAAGAACAATATGCAATGTGTACTTTGACTGGGAGATCTG 407
consensus_12052#2 GCGG-TATGTAAAAA--------------------------------------------- 134
**** ******
consensus_12052#0 ATTGGTAGCATCTAGTTGAATTGTCCTGTGTTAAAAAGCCCCTTGAGTTGATATGCAATT 719
consensus_12052#1 ATTGGTAGCATCTAAAAAAAAAAA--AAAAAAAAAAAAACTCGCGAC------------- 452
consensus_12052#2 ------------------------------------------------------------
consensus_12052#0 ATGTGCTCAGAATTAAGTTGTGGCTTTGCACCTCTAATATGTGTTACTTATTGGTGAGCT 779
consensus_12052#1 ------------------------------------------------------------
consensus_12052#2 ------------------------------------------------------------
consensus_12052#0 TATAATCTATGGATGGATGTAGTCAAAATATGAAAGCATTTT 821
consensus_12052#1 ------------------------------------------
consensus_12052#2 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||