These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12055#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 763 fasta sequence [GAGATTGTGCGATCCAGTCCTAATTAATTATACCGTGAGTTGAAAATTAATTAAGATCACTTAAGGTCTTAAAGCTAGCAGCCATGGCGGCATCGTCCAAGTTGGCTTTACTGGTGTTCACTCTCCTGCTCGCCGCCGCTGCTTTCATCCACGTCGCCTCCGCCGAAGAAACACATGACGATCACGACGGCGGCGATCACGACCCGTCGCCATCGCCGCCGGACCACGAGGACCCGTCGCCGTCGCCGCCGGACCACGAGGACGAACCGCCGCCGCCGTCGTCTCCGGGGAAGGAGGACGTCTGCAAAGGCAAGGGGTGCTGCGACTGGTCCGGCGGCGACTGCAAGCACTACTGCGACGGATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCACAAGTGCTGCTCCAAGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTATACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGCGTGTAAAAAAAAAAAAAAA] [+] EMBL AK109082 [GAGATTGTGCGATCCAGTCCTAATTAATTATACCGTGAGTTGAAAATTAATTAAGATCACTTAAGGTCTTAAAGCTAGCAGCCATGGCGGCATCGTCCAAGTTGGCTTTACTGGTGTTCACTCTCCTGCTCGCCGCCGCTGCTTTCATCCACGTCGCCTCCGCCGAAGAAACACATGACGATCACGACGGCGGCGATCACGACCCGTCGCCATCGCCGCCGGACCACGAGGACCCGTCGCCGTCGCCGCCGGACCACGAGGACGAACCGCCGCCGCCGTCGTCTCCGGGGAAGGAGGACGTCTGCAAAGGCAAGGGGTGCTGCGACTGGTCCGGCGGCGACTGCAAGCACTACTGCGACGGATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCACAAGTGCTGCTCCAAGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTATACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGCGTGTAtg ] [+] EMBL OSR14111A [ ngntnCTAATTANTTATACCGTGAGTTGAAAATTAATTAAGATCACTTAAGGTCTTAAAGCTAGCAGCCATGGCGGCATCGTCCAAGTTGGCTTTACTGGTGTTCACTCTCCTGCTCGCCGCCGCTGCTTTCATCCACGTCGCCTCCGCCGAAGAAACACATGACGATCACGANGGCGGCGATCACGACCCGTCGCCATCGCCGCCGGACCACGAGGACCCGTCGNCGTCGCCGCCGGACCACGAGGACGAACCGCCGCCGCCGTCGTCTCCGGGGAAGGAGGACGTCTGCAAAGGCAAGG ] [+] EMBL OSR20851A [ TTATACCGTGAGTTGAAAATTAATTAAGATCACTTAAGGTCTTAAAGCTAGCAGCCATGGCGGCATCGTCCAAGTTGGCTTTACTGGTGTTCACTCTCCTGCTCGCCGCCGCTGCTTTCATCCACGTCGCCTCCGCCGAAGAAACACATGACGATCACGANGGCGGCGATCACGACCCGTCGCCATCGCCGCCGGACCACGAGGACCCGTCGCCGTCGCCGCCGGACCACGAGGACGAACCGCCGCCGNCGTCGTCTCCGGGGAAG ] [+] EMBL AU162569 [ TTAAAGCTAGCAGCCATGGCGGCATCGTCCAAGTTGGCTTTACTGGTGTTCACTCTCCTGCTCGCCGCCGCTGCTTTCATCCACGTCGCCTCCGCCGAAGAAACACATGACGATCACGACGGCGGCGATCACGACCCGTCGCCATCGCCGCCGGACCACGAGGACCCGTCGCCGTCGCCGCCGGACCACGAGGACGAACCGCCGCCGCCGTCGTCTCCGGGGAAGGAGGACGTCTGCAAAGGCAAGGGGTGCTGCGACTGGTCCGGCGGCGACTGCAAGCACTACTGCGACGGATACGACGACAAAT ] [+] EMBL AU184153 [ gGGCGACTGCAAGCACTACTGCGACGGATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCNCAAGTGCTGCTCCAAGTAGCCCGGCCCNCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTATACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACNCGGTGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGCGTGTAAAAAAAAAAAAAA ] [+] EMBL AU184370 [ TACTGCGACGGATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCACAAGTGCTGCTCCAAGTAGCCCGGCCCNCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTATACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGCGTGTAAAAAAAAAAAAAA ] [+] EMBL AU070654 [ CAAGTGCTGCTCCAAGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTATACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGCGTGTAAAAA ] [+] EMBL CA756308 [ GATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU184068 [ ACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGCGTGTAAAAAAAAA ] consensusID : consensus_12055#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [TACTGCGACGGATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCCACAAGTGCTGCTCCCAAGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTATACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGCGTGTATGTTTGAACGTGAATAAAATTAAAAATAAATTAAAAAAAAAA] [+] EMBL AU070729 [TACTGCGACGGATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCCACAAGTGCTGCTCCCAAGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTATACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCATCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGTACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGCGCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATATAATATAATAATAATAATATGATGTGCGTGTATGTTTGAACGTGAATAAAATTAAAAATAAATTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12055#0 GAGATTGTGCGATCCAGTCCTAATTAATTATACCGTGAGTTGAAAATTAATTAAGATCAC 60 consensus_12055#1 ------------------------------------------------------------ consensus_12055#0 TTAAGGTCTTAAAGCTAGCAGCCATGGCGGCATCGTCCAAGTTGGCTTTACTGGTGTTCA 120 consensus_12055#1 ------------------------------------------------------------ consensus_12055#0 CTCTCCTGCTCGCCGCCGCTGCTTTCATCCACGTCGCCTCCGCCGAAGAAACACATGACG 180 consensus_12055#1 ------------------------------------------------------------ consensus_12055#0 ATCACGACGGCGGCGATCACGACCCGTCGCCATCGCCGCCGGACCACGAGGACCCGTCGC 240 consensus_12055#1 ------------------------------------------------------------ consensus_12055#0 CGTCGCCGCCGGACCACGAGGACGAACCGCCGCCGCCGTCGTCTCCGGGGAAGGAGGACG 300 consensus_12055#1 ------------------------------------------------------------ consensus_12055#0 TCTGCAAAGGCAAGGGGTGCTGCGACTGGTCCGGCGGCGACTGCAAGCACTACTGCGACG 360 consensus_12055#1 --------------------------------------------------TACTGCGACG 10 ********** consensus_12055#0 GATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCC-ACAAGTGCTGCTCC 419 consensus_12055#1 GATACGACGACAAATCCTGCTGCGACGACTGGTCCGGCGACTGCCCACAAGTGCTGCTCC 70 ********************************************* ************** consensus_12055#0 -AAGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTAT 478 consensus_12055#1 CAAGTAGCCCGGCCCGCCGTATATACGTCGATATCGCCGTACGCCGTACTATGTGTGTAT 130 *********************************************************** consensus_12055#0 ACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCA 538 consensus_12055#1 ACGACTGTATACGCAACACAAGCTCGATCGTAGTATTGCTTATTGCACTCTTCGTCGTCA 190 ************************************************************ consensus_12055#0 TCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGT 598 consensus_12055#1 TCAATAAATTAAGGCACGCGTGTCAGCGTGTGTACGCGGTGCCGACGTGCGTTTGTACGT 250 ************************************************************ consensus_12055#0 ACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGC 658 consensus_12055#1 ACGTGTACGGCTTGCTAGGCCATGAGTGTGAGCTCTTTCCAAAGGCTACATGTACTATGC 310 ************************************************************ consensus_12055#0 GCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATAT 718 consensus_12055#1 GCCAGTCGATGGCTTATAATATTGTAATAACATAAGTTGTGCGTGAGTGTAACATGATAT 370 ************************************************************ consensus_12055#0 AATATAATAATAATAATATGATGTGCGTGTA-----AAAAAAAAAAAAAA---------- 763 consensus_12055#1 AATATAATAATAATAATATGATGTGCGTGTATGTTTGAACGTGAATAAAATTAAAAATAA 430 ******************************* ** ** **** consensus_12055#0 ------------- consensus_12055#1 ATTAAAAAAAAAA 443 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||