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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12057#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 923 fasta sequence
[GCGCAGGAGACCTGTCAACGCAGGCGCGAACTCTCCGGACCTCACCACTCATCACCAAGGGCTGCGCGGCAACCTCTACGCCACCGCGGCAGCCGAGGATGTTGGCCGGCAGCCGCCAGCAGCGTGCCAGGAGCTGAAGAAGCGGGCAATGGCTAGCCCCGTTTGGCTGTAGTTTCTGCTTGCTCCATGAAGCTAGCAAGCAGTGCACTAATGGCATCAGCAGTTACAGCACTGCTTCTGCTTGTAGCTTCTGGCACTGAAATAAATCACTCCACTCGTATGGATAATGGATATATCACCACGTATTGCATCTTGTGTTTTGCTCACTGTATCCTGCTGTAACAATAATAACATGAAGATACAAAATAAATTGGGGGAAATGATAT-GTTTTGTAT-CAGCATTTACATGTAAATGAGTGGTGTCTTTAGTCTGGAACTTCT-AAAAGGTACTCGTGCTATGTTACAAGTGTACACCATCGAGAGATGGATAAGCTAAAAATGCCTGGCACTGACTTATTGTGAGTTTGTTCCTGAACTACAACTACAATCTGACACTGGTTACACTACAGCATAGTCATACTTTTTCNCAAAAAAGCAGCAGCTTTGGATCTCCCTGAACGAAAACTTGTGTACCGAAGGAACAGCAACGCAGTTTCAGATCAAGTGGACAGCTCATNCTCCCAGTATTTGGGATATGAATATAATTCTCATCTTCTACAGCCAATGAGCAAATCATGTCTGAATAAAATTGGCCCTGATTNTCACTTCCTGCAGCCAATGATTCAGCATAAGGCGTCTCTTCTGAAATTTCCAGATTATGCATTCATTTCTCAGGTTTTTGCTCTGCTGAATCAGCATCTCCTGTTTGTCCCTCGCACGTTTCCCTGTTATCCAAAACCTGAGTGGGTGCATCTAGAGATCTTG]
[+] EMBL BQ907805 [GCGCAGGAGACCTGTCAACGCAGGCGCGAACTCTCCGGACCTCACCACTCATCACCAAGGGCTGCGCGGCAACCTCTACGCCACCGCGGCAGCCGAGGATGTTGGCCGGCAGCCGCCAGCAGCGTGCCAGGAGCTGAAGAAGCGGGCAATGGCTAGCCCCGTTTGGCTGTAGTTTCTGCTTGCTCCATGAAGCTAGCAAGCAGTGCACTAATGGCATCAGCAGTTACAGCACTGCTTCTGCTTGTAGCTTCTGGCACTGAAATAAATCACTCCACTCGTATGGATAATGGATATATCACCACGTATTGCATCTTGTGTTTTGCTCACTGTATCCTGCTGTAACAATAATAACATGAAGATACAAAATAAATTGGGGGAAATGATAT GTTTTGTAT CAGCATTTACATGTAAATGAGTGGTGTCTTTAGTCTGGAACTTCT AAAAGGTACTCGTGCTATGTTACAAGTGTACACCATCGAGAGATGGATAAGCTAAAAA ]
[-] EMBL CA765453 [ TGGGGGAAATGATATGGTTTTGTATGCAGCATTTACATGTAAATGAGTGGTGTCTTTAGTCTGGAGCTTCTAAAAAGGTACTCGTGCTATGTTACAAGTGTACACCATCGAGAGATGGATAAGCTAACCATGCCTGGCACTGACTTATTGTGAGTTTGTTCCTGAACTACAACTACAATCTGACACTGGTTACACTACAGCATAGTCATACTTTTTCNCAAAAAAGCAGCAGCTTTGGATCTCCCTGAACGAAAACTTGTGTACCGAAGGAACAGCAACGCAGTTTCAGATCAAGTGGACAGCTCATNCTCCCAGTATTTGGGATATGAATATAATTCTCATCTTCTACAGCCAATGAGCAAATCATGTCTGAATAAAATTGGCCCTGATTNTCACTTCCTGCAGCCAATGATTCAGCATAAGGCGTCTCTTCTGAAATTTCCAGATTATGCATTCATTTCTCAGGTTTTTGCTCTGCTGAATCAGCATCTCCTGTTTGTCCCTCGCACGTTTCCCTGTTATCCAAAACCTGAGTGGGTGCATCTAGAGATCTTG]
consensusID : consensus_12057#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 719 fasta sequence
[ACAGTCGATCACACGCGCCCACTCGACCAGGTAGCTAGCTTGCTTGCTGCAGCTCTCTCGTCGGAATCAATGGCTGCGACTTCCGGCGACGGCGGCGCCGCCGCCTG-CCCGGCCTACCCGTGGCCGAACGACGGAGTGCAGCGAGGGCGCAAGGTGTTCATGCAGAGCGACTGCGCCGCGTGCCACACCTCGCTCCCCTACGCCGGCCTCAGCGACGACGGCGCGCGCGCGCGGGCAGCGGCTGTGGAGCCCAAGGCGGCGGAGATCGTCGTCGTGGAGGAGGCGCGGCAGCCGGCGGCGGAGACCGTCAACGGCGGCGCGAACTCTCCGGACCTCACCCTCATCACCA---AG--GGG-CTGCGCGGCAACCTCTACGCCACCGCGGCGCCGAGGATGTTGGCCGGCGCCGCCGCAGCGTGCCAGGAGCTGAAGAAGCGGGCAATGGCTAGCCCCGTTTGGCTGTAGTTTCTGCTTGCTCCATGAAGCTAGCAAGCAGTGCACTAATGGCATCAGCAGTTACAGCACTGCTTCTGCTTGTAGCTTCTGGCACTGAAATAAATCACTCCACTCGTATGGATAATGGATATATCACCACGTATTGCATCTTGTGTTTTGCTCACTGTATCCTGCTGTAACAATAATAACATGAAGACACAAAATAAATTGGGGGAAATGATATGGTTTTACATGTAAATGCTGCATACAAAACCATATCATTTACA]
[+] EMBL AK120394 [ACAGTCGATCACACGCGCCCACTCGACCAGGTAGCTAGCTTGCTTGCTGCAGCTCTCTCGTCGGAATCAATGGCTGCGACTTCCGGCGACGGCGGCGCCGCCGCCTG CCCGGCCTACCCGTGGCCGAACGACGGAGTGCAGCGAGGGCGCAAGGTGTTCATGCAGAGCGACTGCGCCGCGTGCCACACCTCGCTCCCCTACGCCGGCCTCAGCGACGACGGCGCGCGCGCGCGGGCAGCGGCTGTGGAGCCCAAGGCGGCGGAGATCGTCGTCGTGGAGGAGGCGCGGCAGCCGGCGGCGGAGACCGTCAACGGCGGCGCGAACTCTCCGGACCTCACCCTCATCACCAAGCAG GGG CTGCGCGGCAACCTCTACGCCACCGCGGCGCCGAGGATGTTGGCCGGCGCCGCCGCAGCGTGCCAGGAGCTGAAGAAGCGGGCAATGGCTAGCCCCGTTTGGCTGTAGTTTCTGCTTGCTCCATGAAGCTAGCAAGCAGTGCACTAATGGCATCAGCAGTTACAGCACTGCTTCTGCTTGTAGCTTCTGGCACTGAAATAAATCACTCCACTCGTATGGATAATGGATATATCACCACGTATTGCATCTTGTGTTTTGCTCACTGTATCCTGCTGTAACAATAATAACATGAAGACACAAAATAAATTGGGGGAAATGAT ]
[+] EMBL BE229337 [ cgagCGATCACACGCGCCCACTCGACCAGGTAGCTAGCTTGCTTGCTGCAGCTCTCTCGTCGGAATCAATGGCTGCGACTTCCGGCGACGGCGGCGC CCG CTGCCCCGGCCTACCCGTGGCCGAACGACGGAGTGCAGCGAGGGCGCAAGGTGTTCATGCAGAGCGACTGCGCCGCGTGCCACACCTCGCTCCCCTACGCCGGCCTCAGCGACGACGGCGCGCGCGCGCRGGCAGCGGCTGTRGAGCCCAAGGCGGCGGAGATCGTCGTCGTGGAGGAGGCGCGGCAVCCGSCGGCGGAGACCGTCAACGGCGGCGCGAACTTTCCGVACCTCACCCTCATCACCA AGCAGGGTCTGCGCGGCAACCTYTACGCCACCGga ]
[+] EMBL CB653889 [ GCGAGGGCGCAAGGTGTTCATGCAGAGCGACTGCGCCGCGTGCCACACCTCGCTCCCCTACGCCGGCCTCAGCGACGACGGCGCGCGCGCGCGGGCAGCGGCTGTGGAGCCCAAGGCGGCGGAGATCGTCGTCGTGGAGGAGGCGCGGCAGCCGGCGGCGGAGACCGTCAACGGCGGCGCGAACTCTCCGGACCTCACCCTCATCACCA AG GGG CTGCGCGGCAACCTCTACGCCACCGCGGCGCCGAGGATGTTGGCCGGCGCCGCCGCAGCGTGCCAGGAGCTGAAGAAGCGGGCAATGGCTAGCCCCGTTTGGCTGTAGTTTCTGCTTGCTCCATGAAGCTAGCAAGCAGTGCACTAATGGCATCAGCAGTTACAGCACTGCTTCTGCTTGTAGCTTCTGGCACTGAAATAAATCACTCCACTCGTATGGATAATGGATATATCACCACGTATTGCATCTTGTGTTTTGCTCACTGTATCCTGCTGTAACAATAATAACATGAAGACACAAAATAAATTGGGGGAAATGATATGGTTTTACATGTAAATGCTGCATACAAAACCATATCATTTACA]
[+] EMBL CB655697 [ GCGAGGGCGCAAGGTGTTCATGCAGAGCGACTGCGCCGCGTGCCACACCTCGCTCCCCTACGCCGGCCTCAGCGACGACGGCGCGCGCGCGCGGGCAGCGGCTGTGGAGCCCAAGGCGGCGGAGATCGTCGTCGTGGAGGAGGCGCGGCAGCCGGCGGCGGAGACCGTCAACGGCGGCGCGAACTCTCCGGACCTCACCCTCATCACCA AG GGG CTGCGCGGCAACCTCTACGCCACCGCGGCGCCGAGGATGTTGGCCGGCGCCGCCGCAGCGTGCCAGGAGCTGAAGAAGCGGGCAATGGCTAGCCCCGTTTGGCTGTAGTTTCTGCTTGCTCCATGAAGCTAGCAAGCAGTGCACTAATGGCATCAGCAGTTACAGCACTGCTTCTGCTTGTAGCTTCTGGCACTGAAATAAATCACTCCACTCGTATGGATAATGGATATATCACCACGTATTGCATCTTGTGTTTTGCTCACTGTATCCTGCTGTAACAATAATAACATGAAGACACAAAATAAATTGGGGGAAATGATATGGTTTTACATGTAAATGCTGCATACAAAACCATATC ]
[+] EMBL BI806119 [ CTCTCCGGACCTCACCCTCATCACCA AG GGG CTGCGCGGCAACCTCTACGCCACCGCGGCGCCGAGGATGTTGGCCGGCGCCGCCGCAGCGTGCCAGGAGCTGAAGAAGCGGGC ATGGCTAGCCCCGTTTGGCTGTAGTTTCTGCTTGCTCCATGAAGCTAGCAAGCAGTGCACTAATGGCATCAGCAGTTACAGCACTGCTTCTGCTTGTAGCTTCTGGCACTGAAATAAATCACTCCACTCGTATGGATAATGGATATATCACCACGTATTGCATCTTGTGTTTTGCTCACTGTATCCTGCTGTAAC ATAATCAC TGAAGATAC AAATAAATTGGGGGAAATGATATGGTTTTgtaaaaaaa ]
consensusID : consensus_12057#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 610 fasta sequence
[AAGCTGCCTACCTAGCTCGCGTCGGAATTAATGGCCGCGACCGCCGGCGACGCCGCCGCCGCCGCCGCCGCCGCCTGCCCTGCCTACCCATGGCCGAGCGACGGAGCCCAGCGCGGGCGCAAGGTGTTCATGCAGAGCGACTGCACGGCGTGCCACGGCATGTTCTCCTCCAACGCCGGCCTCATCAGCGACGACGACTCGGCGTGGGAGCCCAAGGTGGCGGAGATCGTCGTCGTGGAGGAGGCTCATCAGCCGGTGGCGGCAGCGGCGACACTCCGCGGCGGCGCGTACTACCCGGCGCCGGACCTCACCTTCATTGCAAAGGGCCTGCGAGGCAATAACCTCTACTCCGGCGGCGGCGCCAGCGAGGCGGCGAGGATGCTGGCCGATGCCGCCGCGGCGTGCCAGGAGCTGAAGAAGCGGGCACTGGCTAGCCCCGTCTGGCTCTAGTTTCTTCGATCTGACTAGATCTCAACTCTGAATAATGCAGCCTGCATAATCAGCAGTTGAGCGCTGCTTCTGCAAATAATGTCCCCATCGATCGATGATCTCTTGTAGCAGTAGCTTCCTCCGTTGGAGCTCAAATAAAATTAATTACTCCGCTCAAAAA]
[+] EMBL AK111376 [AAGCTGCCTACCTAGCTCGCGTCGGAATTAATGGCCGCGACCGCCGGCGACGCCGCCGCCGCCGCCGCCGCCGCCTGCCCTGCCTACCCATGGCCGAGCGACGGAGCCCAGCGCGGGCGCAAGGTGTTCATGCAGAGCGACTGCACGGCGTGCCACGGCATGTTCTCCTCCAACGCCGGCCTCATCAGCGACGACGACTCGGCGTGGGAGCCCAAGGTGGCGGAGATCGTCGTCGTGGAGGAGGCTCATCAGCCGGTGGCGGCAGCGGCGACACTCCGCGGCGGCGCGTACTACCCGGCGCCGGACCTCACCTTCATTGCAAAGGGCCTGCGAGGCAATAACCTCTACTCCGGCGGCGGCGCCAGCGAGGCGGCGAGGATGCTGGCCGATGCCGCCGCGGCGTGCCAGGAGCTGAAGAAGCGGGCACTGGCTAGCCCCGTCTGGCTCTAGTTTCTTCGATCTGACTAGATCTCAACTCTGAATAATGCAGCCTGCATAATCAGCAGTTGAGCGCTGCTTCTGCAAATAATGTCCCCATCGATCGATGATCTCTTGTAGCAGTAGCTTCCTCCGTTGGAGCTCAAATAAAATTAAT ]
[+] EMBL OSR0806A [ AGCGACGGAGCCCAGCGCGGGCGCAAGGTGTTCATGCAGAGCGACTGCACGGCGT NCACGGCATGTTCTCCTCCAACGCCGGCCTCATCAGCGACGACGACTCGGCGTGGGAGCCCAAGGTGGCGGAGATCGTCGTCGTGGAGGAGGCTCATCAGCCGNTGGCGGCAGCGGCGACACTCCGCGGCGGCGCGTACTACCCGGCGCCGGACCTCACCTTCATTGCAAAGGGCCTGCGAGGCAATAACCTCTACTCCGGCGGCGGCGCCAGCNAGGCGGCGAGGATGC ]
[+] EMBL AU162390 [ GCGACGGAGCCCAGCGCGGGCGCAAGGTGTTCATGCAGAGCGACTGCACGGCGTGCCACGGCATGTTCTCCTCCAACGCCGGCCTCATCAGCGACGACGACTCGGCGTGGGAGCCCAAGGTGGCGGAGATCGTCGTCGTGGAGGAGGCTCATCAGCCGGTGGCGGCAGCGGCGACACTCCGCGGCGGCGCGTACTACCCGGCGCCGGACCTCACCTTCATTGCAAAGGGCCTGCGAGGCAATAACCTCTACTCCGGCGGCGGCGCCAGCGAGGCGGCGAGGATGCTGGCCGATGCCGCCGCGGCGTGCCAGGAGCTGAAGAAGCGGGCACTGGCTAGCCCCGTCTGGCTCTAGTTTCTTCGATCTGACTAGATCTCAACTCTGAATAATGCAGCCTGCATAATCAGCAGTTGAGCGCTGCTTCTGCAAATAATGTCCCCATCGATCGATGATCTCTTGTAGCAGTAGCTTCCTCCATTGGAGCTCAAATAAAATTAATTACTCCGCTCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12057#1 ACAGTCGATCACACGCGCCCACTCGACCAGGTAGCTAGCTTGCTTGCTGCAGCTCTCTCG 60
consensus_12057#2 ------------------------------------AAGCTGCCTACC-TAGCTCGC--G 21
consensus_12057#0 ------------GCGCAGGAGACCTGTCAACGCAGGCGCGAACTCTCCGGACCTCACCAC 48
* * * *** *
consensus_12057#1 TCGGAATCAATGGCTGCG-ACTTCCGGCGACGGCGGCGCCGCCGCC---------TGCCC 110
consensus_12057#2 TCGGAATTAATGGCCGCG-ACCGCCGGCGACGCCGCCGCCGCCGCCGCCGCCGCCTGCCC 80
consensus_12057#0 TCATCACCAAGGGCTGCGCGGCAACCTCTACGCCACCGCGGCAGCCGAGGATGT-TGGCC 107
** * ** *** *** * * *** * *** ** *** ** **
consensus_12057#1 GGCCTACCCGTGGCCGAACGAC-GGAGTGCAGCGAGGGCGCAAGGTGTTCATGCAGAGCG 169
consensus_12057#2 TGCCTACCCATGGCCGAGCGAC-GGAGCCCAGCGCGGGCGCAAGGTGTTCATGCAGAGCG 139
consensus_12057#0 GGCA-GCCGCCAGCAGCGTGCCAGGAGCTGAAGAAGCGGGCAATG-GCTAGCCCCGTTTG 165
** ** ** * * * **** * * * **** * * * * * *
consensus_12057#1 ACTGCG----CCGCGTGCCACACCTCGCTCCCCT-----ACGCCGGCCTCAGCGACGACG 220
consensus_12057#2 ACTGCA----CGGCGTGCCACGGCATGTTCTCCTCCA--ACGCCGGCCTCATCAGCGACG 193
consensus_12057#0 GCTGTAGTTTCTGCTTGCTCCATGAAGCTAGCAAGCAGTGCACTAATGGCATCAGCAGTT 225
*** * ** *** * * * * * * ** * *
consensus_12057#1 GCGCGCGCGCGCGGGCAGCGGCTGTGGAGC-CCAAGGCGGCGGAGATCGTCGTCGTGGAG 279
consensus_12057#2 ACGACTCGGCGTGGG------------AGC-CCAAGGTGGCGGAGATCGTCGTCGTGGAG 240
consensus_12057#0 ACAGCACTGCTTCTGCTTGTAGCTTCTGGCACTGAAATAAATCACTCCACTCGTATGGAT 285
* ** * ** * * * * ****
consensus_12057#1 GA--GGCGCGGCAGCCGGCGGC------GGAG-----------ACCGTCAACGGCGGCGC 320
consensus_12057#2 GA--GGCTCATCAGCCGGTGGCGGCAGCGGCG-----------ACACTCCGCGGCGGCGC 287
consensus_12057#0 AATGGATATATCACCACGTATTGCATCTTGTGTTTTGCTCACTGTATCCTGCTGTAACAA 345
* * ** * * * * * * * *
consensus_12057#1 GAACT------CTCCGGACCTCACCCTCATCACCAAG----GGGCTGCG-CGGCAA---C 366
consensus_12057#2 GTACTACCCGGCGCCGGACCTCACCTTCATTGCAAAG----GGCCTGCG-AGGCAATAAC 342
consensus_12057#0 TAATAACATGAAGATACAAAATAAATTGGGGGAAATGATATGTTTTGTATCAGCATTTAC 405
* * * * * * * ** *** *
consensus_12057#1 CTCTAC------------GCCACCGCGGCGCC----GAGGATGTTGGC-CGGCGCCGCCG 409
consensus_12057#2 CTCTACTCCGGCGGCGGCGCCAGCGAGGCGGC----GAGGATGCTGGC-CGATGCCGCCG 397
consensus_12057#0 ATGTAAATGAGTGGTGTCTTTAGTCTGGAACTTCTAAAAGGTACTCGTGCTATGTTACAA 465
* ** * ** * * * * * * * *
consensus_12057#1 CAGCGTGCCA---GGAGCTGAAGAAGCGGGCAATGGCTAGCCCCGTTTGGCTGT-AGTTT 465
consensus_12057#2 CGGCGTGCCA---GGAGCTGAAGAAGCGGGCACTGGCTAGCCCCGTCTGGCTCT-AGTTT 453
consensus_12057#0 GTGTACACCATCGAGAGATGGATAAGCTAAAAATGCCTGGCACTGACTTATTGTGAGTTT 525
* *** *** ** * **** * ** ** ** * * * * * *****
consensus_12057#1 CTGC--TTGCTC--CATGAAGCTAG----CAA--GCAGTGCA-----------------C 498
consensus_12057#2 CTTC--GATCTG--ACTAGATCTCAACTCTGA--ATAATGCAG----------------C 491
consensus_12057#0 GTTCCTGAACTACAACTACAATCTGACACTGGTTACACTACAGCATAGTCATACTTTTTC 585
* * ** * * * * ** *
consensus_12057#1 TAATGGCATCAGCAGTTACAGCACTGCTTCTGCTTGTA---GCTTCTGGCACTGAAATAA 555
consensus_12057#2 CTGCATAATCAGCAGTTG-AGCGCTGCTTCTGCAAATA---ATGTCCCC-------ATCG 540
consensus_12057#0 NCAAAAAAGCAGCAGCTTTGGATCTCCCTGAACGAAAACTTGTGTACCGAAGGAACAGCA 645
* ****** * * ** * * * * * *
consensus_12057#1 ATCACTCCACTCGTATGGATAATGGATATATCACCACGTATTGCATCTTGTGTTTTGCTC 615
consensus_12057#2 ATCGATGATCTCTTGTAG-CAGTAGCTTCCTC------CGTTGGAGCTCAAATAAAATTA 593
consensus_12057#0 ACGCAGTTTCAGATCAAGTGGACAGCTCATNCTCCCAGTATTTGGG---ATATGAATATA 702
* * * * * * * ** * *
consensus_12057#1 ACTGTATCCTGCTGTAACAATAATAACATGAAGACACAAAATAAATTGGGGGAAATGATA 675
consensus_12057#2 ATT--ACTCCGCTCAAAAA----------------------------------------- 610
consensus_12057#0 ATTCTCATCTTCTACAGCCAATGAGCAAATCATGTCTGAATAAAATTGGCCCTGATTNTC 762
* * * ** *
consensus_12057#1 TGGTTTTACATGTAAATGCTGCATACAAAACCATATCATTTACA---------------- 719
consensus_12057#2 ------------------------------------------------------------
consensus_12057#0 ACTTCCTGCAGCCAATGATTCAGCATAAGGCGTCTCTTCTGAAATTTCCAGATTATGCAT 822
consensus_12057#1 ------------------------------------------------------------
consensus_12057#2 ------------------------------------------------------------
consensus_12057#0 TCATTTCTCAGGTTTTTGCTCTGCTGAATCAGCATCTCCTGTTTGTCCCTCGCACGTTTC 882
consensus_12057#1 -----------------------------------------
consensus_12057#2 -----------------------------------------
consensus_12057#0 CCTGTTATCCAAAACCTGAGTGGGTGCATCTAGAGATCTTG 923
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||