These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 887 fasta sequence [ATCCGCGAAGCTACCAAACCGAGCCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC-TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA-GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT-GAAGGTGC-TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC--ACGCTGACGCACAGCGAC-GTGA-CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGAGGTGGTGGCGGAGTGGAAGAAGGTGCAGGGCCACATGTCGCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCGACCTCATCGCCGGCCTCCGCTACTACATCTTCCGCAAGGAGCTCCCCGTGGTTCTGAAGGCGTTCGTCCACGGCGACGGCAACCTGTTCAGCCGGCACCCGGAGCTGGAGGAGGCCACGGTGTGGGTCTACTTCCACTCCAACCTCCCACGCTTCAACCGCGTCGAGTGCTGGGGCCCGCTCCGCGACGCCGGAGCGCCGCCCGAGG] [+] EMBL AK105810 [ATCCGCGAAGCTACCAAACCGAGCCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT GAAGGTGC TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC ACGCTGACGCACAGCGAC GTGA CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGAGGTGGTGGCGGAGTGGAAGAAGGTGCAGGGCCACATGTCGCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCGACCTCATCGCCGGCCTCCGCTACTACATCTTCCGCAAGGAGCTCCCCGTGGTTCTGAAGGCGTTCGTCCACGGCGACGGCAACCTGTTCAGCCGGCACCCGGAGCTGGAGGAGGCCACGGTGTGGGTCTACTTCCACTCCAACCTCCCACGCTTCAACCGCGTCGAGTGCTGGGGCCCGCTCCGCGACGCCGGAGCGCCGCCCGAGG] [+] EMBL CB648617 [ TACCACCCCTAACCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT GAAGGTGC TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC ACGCTGACGCACAGCGAC GTGA CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGAGGTGGTGGCGGAGTGGAAGAAGGTGCAGGGCCACATGTCGCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCGACCTCATCGCCGGCCTCCGCTACTACATCTTCCGCAAGGAGCTCCCCGTGGTTCTGAAGGCGTTCGTCCACGGCGACGGCAACC ] [+] EMBL C28711 [ CCAAACCGAGCCAAAATTTTNATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGCTTGCCACAACTNTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA G ] [+] EMBL AU070253 [ ACCGAGCCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGT ] [+] EMBL AU162646 [ ACCGAGCCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCNGCCGCTACGTCGTGCCGAGGGCGAGGGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCTGGAAGGTGCTTGTTtnct ] [+] EMBL CB664635 [ AGCCACAATTTTGATCAATCGATCTGGCGGCCGGAGTCTTTGTTGAGGCGTGCTAGGCTCGTGCTTTCGCCAAGAGGGATTAATTAGCCTCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGGTAGCTATGACTAACAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCATCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGGTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGTAATCTTCGAGGCGTCCAAGCT GAAGGTGC TGTTCCTGGGGGTGGACAAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC ACGCTGACGCACAGCGAC GTGA CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAACGGGACGAGGTGGTGGCGGAGTGGAAGAAAGTGCAGGGCCACATGTCTCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCTAGCTCATCGCCGGACTCCGCTACTACATCTTCCGCAAGG ] [+] EMBL CB676753 [ agcccttTTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT GAAGGTGC TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC ACGCTGACGCACAGCGAC GTGA CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGAGGTGGTGGCGGAGTGGAAGAAGGTGCATGGCCACATGTCGCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCGACCTCATCGCCGGCCTCCGCTACTACATCTTCCGCAAGGAGCTCCC ] [+] EMBL C73773 [ TAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGNCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGNCGNCGNCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT GAAGGTGC TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTNCCGCGGACGTACAAAGGTTGACGGACANGGACGGTGACCGGCGAaggntta ] [+] EMBL AU174500 [ TGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT GAAGGTGC TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC ACGCTGACGCACAGCGAC GTGA CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGAGGTGGTGGCGGAGTGGAAGAAGGTGCAGGGCCACATGTCGCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCG ] consensusID : consensus_12069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [NGNANGCANGACATNGCTGCTGCTACTTCGACCATNTCCCTNCTTCCTCCCATCACCCAGCAGCAGCGNTNGCACNCCNCGACTCCCTCGTCGTCCTCNCCTCCCGCTGCCACAACTCTCGCCGCCGCCGCCNCTNCCGCTACGTCGTGCCGAGGGGAGGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCTGAAGGTGCTGTTCCTNGGGGTTGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTACACGCTTGACGCACAGCACGTTGACGGCGAGGCTTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGATTNCAGGGGGTGGTACAACAAGCTTCANGGTGACGAGGTGGTTGCTGAGTGGAAGAAGGTNCAGGGCACATGTTGTTTAC] [+] EMBL OSC750 [NGNANGCANGACATNGCTGCTGCTACTTCGACCATNTCCCTNCTTCCTCCCATCACCCAGCAGCAGCGNTNGCACNCCNCGACTCCCTCGTCGTCCTCNCCTCCCGCTGCCACAACTCTCGCCGCCGCCGCCNCTNCCGCTACGTCGTGCCGAGGGGAGGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCTGAAGGTGCTGTTCCTNGGGGTTGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTACACGCTTGACGCACAGCACGTTGACGGCGAGGCTTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGATTNCAGGGGGTGGTACAACAAGCTTCANGGTGACGAGGTGGTTGCTGAGTGGAAGAAGGTNCAGGGCACATGTTGTTTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12069#0 ATCCGCGAAGCTACCAAACCGAGCCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCT 60 consensus_12069#1 ------------------------------------------------------------ consensus_12069#0 TTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAG 120 consensus_12069#1 ------------------------------------------------------------ consensus_12069#0 CATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGT 180 consensus_12069#1 ------------------------------------------------------------ consensus_12069#0 TGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAG- 239 consensus_12069#1 --------------------------------------------------NGNANGCANG 10 * *** consensus_12069#0 ACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGT 299 consensus_12069#1 ACATNGCTGCTGCTACTTCGACCATNTCCCTNCTTCCTCCCATCACCCAGCAGCAGCGNT 70 **** ******************** ***** ************************** * consensus_12069#0 GGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGCTGCCACAACTCTCGCCGCCGCC 359 consensus_12069#1 NGCACNCCNC-GACTCCCTCGTCGTCCTCNCCTCCCGCTGCCACAACTCTCGCCGCCGCC 129 **** ** * ****************** ****************************** consensus_12069#0 GCCGCTGCCGCTACGTCGTGCCGAGGGCGAGGCTGTTCGGGCCGGCGATCTTCGAGGCGT 419 consensus_12069#1 GCCNCTNCCGCTACGTCGTGCCGAGGG-GAGGCTGTTCGGGCCGGCGATCTTCGAGGCGT 188 *** ** ******************** ******************************** consensus_12069#0 CGAAGCTGAAGGTGCTGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGC 479 consensus_12069#1 CGAAGCTGAAGGTGCTGTTCCTNGGGGTTGACGAGGAGAAGCACCAGCACCCGGGGAAGC 248 ********************** ***** ******************************* consensus_12069#0 TGCCGCGGACGTACACGCT-GACGCACAGCGACGTGACGGCGAGGCT-GACGCTGGCGGT 537 consensus_12069#1 TGCCGCGGACGTACACGCTTGACGCACAGCACGTTGACGGCGAGGCTTGACGCTGGCGGT 308 ******************* ********** ************* ************ consensus_12069#0 GTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGA 597 consensus_12069#1 GTCGCACACCATCAACCGGGCG-ATTNCAGGGGGTGGTACAACAAGCTTCANGGTGACGA 367 ********************** * ****************** ** * ***** consensus_12069#0 GGTGGTGGCGGAGTGGAAGAAGGTGCAGGGCCACATGTCGCTGCACGTCCACTGCCACAT 657 consensus_12069#1 GGTGGTTGCTGAGTGGAAGAAGGTNCAGGGC-ACATGTTGTT-TAC-------------- 411 ****** ** ************** ****** ****** * * ** consensus_12069#0 CTCCGGCGGCCACGTCCTCCTCGACCTCATCGCCGGCCTCCGCTACTACATCTTCCGCAA 717 consensus_12069#1 ------------------------------------------------------------ consensus_12069#0 GGAGCTCCCCGTGGTTCTGAAGGCGTTCGTCCACGGCGACGGCAACCTGTTCAGCCGGCA 777 consensus_12069#1 ------------------------------------------------------------ consensus_12069#0 CCCGGAGCTGGAGGAGGCCACGGTGTGGGTCTACTTCCACTCCAACCTCCCACGCTTCAA 837 consensus_12069#1 ------------------------------------------------------------ consensus_12069#0 CCGCGTCGAGTGCTGGGGCCCGCTCCGCGACGCCGGAGCGCCGCCCGAGG 887 consensus_12069#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||