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Oryza sativa
cluster # 12069 cluster # 12069       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12069#0 length = 887 sequences # 9  
consensus_12069#1 length = 411 sequences # 1  

consensusID : consensus_12069#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 887
fasta sequence
                              [ATCCGCGAAGCTACCAAACCGAGCCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC-TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA-GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT-GAAGGTGC-TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC--ACGCTGACGCACAGCGAC-GTGA-CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGAGGTGGTGGCGGAGTGGAAGAAGGTGCAGGGCCACATGTCGCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCGACCTCATCGCCGGCCTCCGCTACTACATCTTCCGCAAGGAGCTCCCCGTGGTTCTGAAGGCGTTCGTCCACGGCGACGGCAACCTGTTCAGCCGGCACCCGGAGCTGGAGGAGGCCACGGTGTGGGTCTACTTCCACTCCAACCTCCCACGCTTCAACCGCGTCGAGTGCTGGGGCCCGCTCCGCGACGCCGGAGCGCCGCCCGAGG]

[+] EMBL AK105810             [ATCCGCGAAGCTACCAAACCGAGCCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT GAAGGTGC TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC  ACGCTGACGCACAGCGAC GTGA CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGAGGTGGTGGCGGAGTGGAAGAAGGTGCAGGGCCACATGTCGCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCGACCTCATCGCCGGCCTCCGCTACTACATCTTCCGCAAGGAGCTCCCCGTGGTTCTGAAGGCGTTCGTCCACGGCGACGGCAACCTGTTCAGCCGGCACCCGGAGCTGGAGGAGGCCACGGTGTGGGTCTACTTCCACTCCAACCTCCCACGCTTCAACCGCGTCGAGTGCTGGGGCCCGCTCCGCGACGCCGGAGCGCCGCCCGAGG]
[+] EMBL CB648617             [           TACCACCCCTAACCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT GAAGGTGC TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC  ACGCTGACGCACAGCGAC GTGA CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGAGGTGGTGGCGGAGTGGAAGAAGGTGCAGGGCCACATGTCGCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCGACCTCATCGCCGGCCTCCGCTACTACATCTTCCGCAAGGAGCTCCCCGTGGTTCTGAAGGCGTTCGTCCACGGCGACGGCAACC                                                                                                                           ]
[+] EMBL C28711               [             CCAAACCGAGCCAAAATTTTNATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGCTTGCCACAACTNTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA G                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU070253             [                 ACCGAGCCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU162646             [                 ACCGAGCCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCNGCCGCTACGTCGTGCCGAGGGCGAGGGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCTGGAAGGTGCTTGTTtnct                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB664635             [                     AGCCACAATTTTGATCAATCGATCTGGCGGCCGGAGTCTTTGTTGAGGCGTGCTAGGCTCGTGCTTTCGCCAAGAGGGATTAATTAGCCTCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGGTAGCTATGACTAACAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCATCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGGTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGTAATCTTCGAGGCGTCCAAGCT GAAGGTGC TGTTCCTGGGGGTGGACAAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC  ACGCTGACGCACAGCGAC GTGA CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAACGGGACGAGGTGGTGGCGGAGTGGAAGAAAGTGCAGGGCCACATGTCTCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCTAGCTCATCGCCGGACTCCGCTACTACATCTTCCGCAAGG                                                                                                                                                                        ]
[+] EMBL CB676753             [                      agcccttTTTTGATCGATCGATCGGCCGGCCGGTGTCTTTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAGCATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT GAAGGTGC TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC  ACGCTGACGCACAGCGAC GTGA CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGAGGTGGTGGCGGAGTGGAAGAAGGTGCATGGCCACATGTCGCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCGACCTCATCGCCGGCCTCCGCTACTACATCTTCCGCAAGGAGCTCCC                                                                                                                                                                 ]
[+] EMBL C73773               [                                                                                                                                                           TAAAGCTGTCAAGAGTCGTTTTGGTTGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGNCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGNCGNCGNCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT GAAGGTGC TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTNCCGCGGACGTACAAAGGTTGACGGACANGGACGGTGACCGGCGAaggntta                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU174500             [                                                                                                                                                                                                                                                  TGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTGGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGC TGCCACAACTCTCGCCGCCGCCGCCGCTGCCGCTACGTCGTGCCGAGGGCGA GGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCT GAAGGTGC TGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTAC  ACGCTGACGCACAGCGAC GTGA CGGCGAGGCTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGAGGTGGTGGCGGAGTGGAAGAAGGTGCAGGGCCACATGTCGCTGCACGTCCACTGCCACATCTCCGGCGGCCACGTCCTCCTCG                                                                                                                                                                                                               ]


>consensus_12069#0 ATCCGCGAAGCTACCAAACCGAGCCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCT TTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAG CATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGT TGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAGA CATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGTG GCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGCTGCCACAACTCTCGCCGCCGCCG CCGCTGCCGCTACGTCGTGCCGAGGGCGAGGCTGTTCGGGCCGGCGATCTTCGAGGCGTC GAAGCTGAAGGTGCTGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGCT GCCGCGGACGTACACGCTGACGCACAGCGACGTGACGGCGAGGCTGACGCTGGCGGTGTC GCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGAGGT GGTGGCGGAGTGGAAGAAGGTGCAGGGCCACATGTCGCTGCACGTCCACTGCCACATCTC CGGCGGCCACGTCCTCCTCGACCTCATCGCCGGCCTCCGCTACTACATCTTCCGCAAGGA GCTCCCCGTGGTTCTGAAGGCGTTCGTCCACGGCGACGGCAACCTGTTCAGCCGGCACCC GGAGCTGGAGGAGGCCACGGTGTGGGTCTACTTCCACTCCAACCTCCCACGCTTCAACCG CGTCGAGTGCTGGGGCCCGCTCCGCGACGCCGGAGCGCCGCCCGAGG



consensusID : consensus_12069#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence
                              [NGNANGCANGACATNGCTGCTGCTACTTCGACCATNTCCCTNCTTCCTCCCATCACCCAGCAGCAGCGNTNGCACNCCNCGACTCCCTCGTCGTCCTCNCCTCCCGCTGCCACAACTCTCGCCGCCGCCGCCNCTNCCGCTACGTCGTGCCGAGGGGAGGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCTGAAGGTGCTGTTCCTNGGGGTTGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTACACGCTTGACGCACAGCACGTTGACGGCGAGGCTTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGATTNCAGGGGGTGGTACAACAAGCTTCANGGTGACGAGGTGGTTGCTGAGTGGAAGAAGGTNCAGGGCACATGTTGTTTAC]

[+] EMBL OSC750               [NGNANGCANGACATNGCTGCTGCTACTTCGACCATNTCCCTNCTTCCTCCCATCACCCAGCAGCAGCGNTNGCACNCCNCGACTCCCTCGTCGTCCTCNCCTCCCGCTGCCACAACTCTCGCCGCCGCCGCCNCTNCCGCTACGTCGTGCCGAGGGGAGGCTGTTCGGGCCGGCGATCTTCGAGGCGTCGAAGCTGAAGGTGCTGTTCCTNGGGGTTGACGAGGAGAAGCACCAGCACCCGGGGAAGCTGCCGCGGACGTACACGCTTGACGCACAGCACGTTGACGGCGAGGCTTGACGCTGGCGGTGTCGCACACCATCAACCGGGCGATTNCAGGGGGTGGTACAACAAGCTTCANGGTGACGAGGTGGTTGCTGAGTGGAAGAAGGTNCAGGGCACATGTTGTTTAC]


>consensus_12069#1 NGNANGCANGACATNGCTGCTGCTACTTCGACCATNTCCCTNCTTCCTCCCATCACCCAG CAGCAGCGNTNGCACNCCNCGACTCCCTCGTCGTCCTCNCCTCCCGCTGCCACAACTCTC GCCGCCGCCGCCNCTNCCGCTACGTCGTGCCGAGGGGAGGCTGTTCGGGCCGGCGATCTT CGAGGCGTCGAAGCTGAAGGTGCTGTTCCTNGGGGTTGACGAGGAGAAGCACCAGCACCC GGGGAAGCTGCCGCGGACGTACACGCTTGACGCACAGCACGTTGACGGCGAGGCTTGACG CTGGCGGTGTCGCACACCATCAACCGGGCGATTNCAGGGGGTGGTACAACAAGCTTCANG GTGACGAGGTGGTTGCTGAGTGGAAGAAGGTNCAGGGCACATGTTGTTTAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12069#0      ATCCGCGAAGCTACCAAACCGAGCCAAAATTTTGATCGATCGATCGGCCGGCCGGTGTCT 60
consensus_12069#1      ------------------------------------------------------------
                                                                                   

consensus_12069#0      TTGTTGAGGCGTGCAAGGCTCGTGCTTTCGCCGAGAGGGATTAATTAGCCGCGCCTCCAG 120
consensus_12069#1      ------------------------------------------------------------
                                                                                   

consensus_12069#0      CATCTCCGGCCTCCATAGAGATCCCAGCTTATAATTAAAGCTGTCAAGAGTCGTTTTGGT 180
consensus_12069#1      ------------------------------------------------------------
                                                                                   

consensus_12069#0      TGTTAGGCTTAAAGTTAACTACTGCTGGCTAGCTAGGACTAAGAGATCCGAGGGAGCAG- 239
consensus_12069#1      --------------------------------------------------NGNANGCANG 10
                                                                          *   ***  

consensus_12069#0      ACATGGCTGCTGCTACTTCGACCATGTCCCTGCTTCCTCCCATCACCCAGCAGCAGCGGT 299
consensus_12069#1      ACATNGCTGCTGCTACTTCGACCATNTCCCTNCTTCCTCCCATCACCCAGCAGCAGCGNT 70
                       **** ******************** ***** ************************** *

consensus_12069#0      GGCACGCCGCCGACTCCCTCGTCGTCCTCGCCTCCCGCTGCCACAACTCTCGCCGCCGCC 359
consensus_12069#1      NGCACNCCNC-GACTCCCTCGTCGTCCTCNCCTCCCGCTGCCACAACTCTCGCCGCCGCC 129
                        **** ** * ****************** ******************************

consensus_12069#0      GCCGCTGCCGCTACGTCGTGCCGAGGGCGAGGCTGTTCGGGCCGGCGATCTTCGAGGCGT 419
consensus_12069#1      GCCNCTNCCGCTACGTCGTGCCGAGGG-GAGGCTGTTCGGGCCGGCGATCTTCGAGGCGT 188
                       *** ** ******************** ********************************

consensus_12069#0      CGAAGCTGAAGGTGCTGTTCCTGGGGGTGGACGAGGAGAAGCACCAGCACCCGGGGAAGC 479
consensus_12069#1      CGAAGCTGAAGGTGCTGTTCCTNGGGGTTGACGAGGAGAAGCACCAGCACCCGGGGAAGC 248
                       ********************** ***** *******************************

consensus_12069#0      TGCCGCGGACGTACACGCT-GACGCACAGCGACGTGACGGCGAGGCT-GACGCTGGCGGT 537
consensus_12069#1      TGCCGCGGACGTACACGCTTGACGCACAGCACGTTGACGGCGAGGCTTGACGCTGGCGGT 308
                       ******************* **********    ************* ************

consensus_12069#0      GTCGCACACCATCAACCGGGCGCAGCTGCAGGGGTGGTACAACAAGCTGCAGCGGGACGA 597
consensus_12069#1      GTCGCACACCATCAACCGGGCG-ATTNCAGGGGGTGGTACAACAAGCTTCANGGTGACGA 367
                       ********************** *      ****************** **  * *****

consensus_12069#0      GGTGGTGGCGGAGTGGAAGAAGGTGCAGGGCCACATGTCGCTGCACGTCCACTGCCACAT 657
consensus_12069#1      GGTGGTTGCTGAGTGGAAGAAGGTNCAGGGC-ACATGTTGTT-TAC-------------- 411
                       ****** ** ************** ****** ****** * *  **              

consensus_12069#0      CTCCGGCGGCCACGTCCTCCTCGACCTCATCGCCGGCCTCCGCTACTACATCTTCCGCAA 717
consensus_12069#1      ------------------------------------------------------------
                                                                                   

consensus_12069#0      GGAGCTCCCCGTGGTTCTGAAGGCGTTCGTCCACGGCGACGGCAACCTGTTCAGCCGGCA 777
consensus_12069#1      ------------------------------------------------------------
                                                                                   

consensus_12069#0      CCCGGAGCTGGAGGAGGCCACGGTGTGGGTCTACTTCCACTCCAACCTCCCACGCTTCAA 837
consensus_12069#1      ------------------------------------------------------------
                                                                                   

consensus_12069#0      CCGCGTCGAGTGCTGGGGCCCGCTCCGCGACGCCGGAGCGCCGCCCGAGG 887
consensus_12069#1      --------------------------------------------------
                                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)