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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12076#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 870 fasta sequence
[AAAGCGCCACCCACCAAGTCCACCAAGGCACCCGCCCCGGCGCCCAAGGCGGCCAAGGCCACCCCGCCGCCGGCCTCGTCTCCCCCGGTCGAGGCTCCCGTCGCGTCGCCTCCTTCCCCCGCCGCCGAGGCGCCCGCCACCATCCCCACCAAGCCCGACGCACCCGCGCCGGCGCCGGCCAAGAAGAAGAAGCCCTCCCCGCCATCCAAGAAGAAGAAGAAGAGCTCCAAGGCCCCCGCCCCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCCGCCTCGTNCACGGNCGACGCCCCCGGCCCCGCCGGNGACGGTGTCGCCGCCGACTCCACGGGAGCCGC-AGGGAGGACCAGCGTGCAGGCGATCGCG-TCGGCGTGCGCCGTGGCGC-TCGGCCTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC-GATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTA------GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC-GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC-GCCCACGATATGACTCTGCTAGCTGCTGCCTGCCC-GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTATTATTCCATCTTTGCCCGGATCATAGATCTGTCATCTTTTTT---NTCAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU173775 [AAAGCGCCACCCACCAAGTCCACCAAGGCACCCGCCCCGGCGCCCAAGGCGGCCAAGGCCACCCCGCCGCCGGCCTCGTCTCCCCCGGTCGAGGCTCCCGTCGCGTCGCCTCCTTCCCCCGCCGCCGAGGCGCCCGCCACCATCCCCACCAAGCCCGACGCACCCGCGCCGGCGCCGGCCAAGAAGAAGAAGCCCTCCCCGCCATCCAAGAAGAAGAAGAAGAGCTCCAAGGCCCCCGCCCCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCCGCCTCGTNCACGGNCGACGCCCCCGGCCCCGCCGGNGACGGTGTCGCCGCCGACTCCACGGGAGCCGCAAGGGAGGACCAGCGTGCAGGCGATCGCGTTCGGCGTGCGCCGTGGCGCTTAGGCCTCG ]
[+] EMBL AK062359 [ AAGCCCGACGCACCCGCGCCGGCGCCGGCCAAGAAGAAGAAGCCCTCCCCGCCATCCAAGAAGAAGAAGAAGAGCTCCAAGGCCCCCGCCCCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCCGCCTCGTCCACGGCCGACGCCCCCGGCCCCGCCGGCGACGGTGTCGCCGCCGACTCCACGGGAGCCGC AGGGAGGACCAGCGTGCAGGCGATCGCG TCGGCGTGCGCCGTGGCGC TCGGCCTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC GATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTA GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC GCCCACGATATGACTCTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGT ]
[+] EMBL AU173774 [ GGGAGGACCAGCGTGCAGGCGATCGCG TCGGCGTGCNCCGTGGCGC TCGGCCTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTCAGATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTA GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGANTNATTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC GCCCACGATATGACTCTGCTAGCTGCTGCCTGCCCTGCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTAaaaaa ]
[-] EMBL CB967154 [ GGCGATCGCG TCGGCGTGCGCCGTGGCGC TCGGCCTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC GATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTAGCTTTGGCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC GCCCACGATATGACTCTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTATTATTCCATCTTTGCCCGGATCATAGATCTGTCATC ]
[+] EMBL AU031179 [ gatccnctG TCGGCGTGCNCCGTGGCGC TCGGCCTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCTTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCNCGTC GATTCTTTTNCGGGACGGGAGGGNGGAGGAGGAGGGACCTTA GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTG TAC GCCCNCGATATGACTCTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTATTATTCCATCTTTGCCCGGATCATNGATCTGTNNTCTTTTTTNTNNTCAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA999726 [ GTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACGACGCAGATGGCAGCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC GATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTA GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC GCCCACGATATGACTCTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTATTATTCCATCTTT ]
[+] EMBL AU184750 [ CANCGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC GATTCTTTTGCGGGACGGGAGGGAGGAGGAGGAGGGNCCTTA GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATCGGCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTAC GCCCACGATATGACTNTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCATCATCATCATTGATTCATTGTATTATTCCATCTTTGCCCGGATCATAGATCTGTCATCTTTTTT CTCAAAAAAAAAA ]
[+] EMBL AU184742 [ CAACGGCCGGTGCGCCCCACCACATTTTGCGCTGTATTTTGCTCGTC GATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGNCCTTA GCTTTGGCTTTGGCTTTACCACTCTCCCAACCACATTTGATGATTGAGCGATC GCCATGCCTCGGATTCTTTTGTTTCTTTCTTCTTCTTCTTCTTCTCTCTGCTACAGCCCACGATATGACTCTGCTAGCTGCTGCCTGCCC GCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCAaaaaa ]
consensusID : consensus_12076#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence
[AAGAAGAGCTCCAAGGCCCCCGCCCCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCCGCNTCGTCCACGGCCGACGCCCCCGGCCCCNCGNCGAACGGTGTCGCNCGNACTCCACGGGAGCCGCAGGAAGGACCAGCGTGCAGGCGATCGCGTCGGCGTGCGCGTGGCNTTCGGCCTCGTCGCCCTCNTCGCCTAAGCAAAACNGCGTCGTGCAAGNTGNANGCAACGACGACGACGCAGATNGCAGCGGCCGGTGCGCCCCACNACATTTTNCGCTGTATTTTGCTCGTCGATTCT]
[+] EMBL AU031178 [AAGAAGAGCTCCAAGGCCCCCGCCCCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCCGCNTCGTCCACGGCCGACGCCCCCGGCCCCNCGNCGAACGGTGTCGCNCGNACTCCACGGGAGCCGCAGGAAGGACCAGCGTGCAGGCGATCGCGTCGGCGTGCGCGTGGCNTTCGGCCTCGTCGCCCTCNTCGCCTAAGCAAAACNGCGTCGTGCAAGNTGNANGCAACGACGACGACGCAGATNGCAGCGGCCGGTGCGCCCCACNACATTTTNCGCTGTATTTTGCTCGTCGATTCT]
consensusID : consensus_12076#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 244 fasta sequence
[ATCGCCCATGCCCCGGGAATTCCTTTGGTTTCCTTNTTTCTTCTTTCTTCTTCTCTCTGCTACGGCCCACGAATAATGACTTNTGCTAAGCTGCTGGCCTGGCCCGCCCCTGGTACTGGTCCCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGGTCATCATCATCATTGATTCATTGTATTTATTCCATCTTGGCCCGGATCATAGATCTGTCATCTTTTTTCTCATCCAAAAAAA]
[+] EMBL AU184124 [ATCGCCCATGCCCCGGGAATTCCTTTGGTTTCCTTNTTTCTTCTTTCTTCTTCTCTCTGCTACGGCCCACGAATAATGACTTNTGCTAAGCTGCTGGCCTGGCCCGCCCCTGGTACTGGTCCCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGGTCATCATCATCATTGATTCATTGTATTTATTCCATCTTGGCCCGGATCATAGATCTGTCATCTTTTTTCTCATCCAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12076#0 AAAGCGCCACCCACCAAGTCCACCAAGGCACCCGCCCCGGCGCCCAAGGCGGCCAAGGCC 60
consensus_12076#1 ------------------------------------------------------------
consensus_12076#2 ------------------------------------------------------------
consensus_12076#0 ACCCCGCCGCCGGCCTCGTCTCCCCCGGTCGAGGCTCCCGTCGCGTCGCCTCCTTCCCCC 120
consensus_12076#1 ------------------------------------------------------------
consensus_12076#2 ------------------------------------------------------------
consensus_12076#0 GCCGCCGAGGCGCCCGCCACCATCCCCACCAAGCCCGACGCACCCGCGCCGGCGCCGGCC 180
consensus_12076#1 ------------------------------------------------------------
consensus_12076#2 ------------------------------------------------------------
consensus_12076#0 AAGAAGAAGAAGCCCTCCCCGCCATCCAAGAAGAAGAAGAAGAGCTCCAAGGCCCCCGCC 240
consensus_12076#1 ------------------------------------AAGAAGAGCTCCAAGGCCCCCGCC 24
consensus_12076#2 ------------------------------------------------------------
consensus_12076#0 CCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCC 300
consensus_12076#1 CCGGCCCCCGTCGCCGTCGCCGAGTCCCCCAAGCACTCCAAGAAGGCTAAGGCCCCCGCC 84
consensus_12076#2 ---------------------------------------------------------ATC 3
*
consensus_12076#0 GCCTCGTNCACGGNCGACGCCCCCGGCCCCGCCGGNGACGGTGTCGCCGCCGACTCCACG 360
consensus_12076#1 GCNTCGTCCACGGCCGACGCCCCCGGCCCCNCGNCGAACGGTGTCGCN-CGNACTCCACG 143
consensus_12076#2 GCCCATGCCCCGGGAATTCCTTTGGTTTCCTTNTTTCTTCTTTCTTCTTCTCTCTGCTAC 63
** * *** * * ** * * * ** *
consensus_12076#0 GGAGCCGCAGGGAGGACCAGCGTGCAGGCGATCGCGTCGGCGTGCGCCGTGGCGCTCGGC 420
consensus_12076#1 GGAGCCGCAGGAAGGACCAGCGTGCAGGCGATCGCGTCGGCGTGCGC-GTGGCNTTCGGC 202
consensus_12076#2 GGCCCACGAATAATGACTTNTGC-TAAGCTGCTGGCCTGGCCCGCCC-CTGGTACT-GGT 120
** * * * *** * * ** * *** ** * *** * **
consensus_12076#0 CTCGTCGCCCTCCTCGCCTAAGCAAAACGGCGTCGTGCAACGACGTGAGCAACGACGACG 480
consensus_12076#1 CTCGTCGCCCTCNTCGCCTAAGCAAAACNGCGTCGTGCAA-GNTGNANGCAACGACGACG 261
consensus_12076#2 CCCACTGAGATCATCTACT--TTTAATTTATTTTATGTTG-CTGGTCATCATCATCATTG 177
* * * ** ** ** ** * ** * ** * * *
consensus_12076#0 ACGCAGATGGCAGCGGCCGGTGCGCCCC--ACCACATTTTGCGCTGTATTTTGCTCGTCG 538
consensus_12076#1 ACGCAGATNGCAGCGGCCGGTGCGCCCC--ACNACATTTTNCGCTGTATTTTGCTCGTCG 319
consensus_12076#2 ATTCATTGTATTTATTCCATCTTGGCCCGGATCATAGATCTGTCATCTTTTTTCTCATCC 237
* ** ** * *** * * * * * **** *** **
consensus_12076#0 ATTCTTTTACGGGACGGGAGGGAGGAGGAGGAGGGACCTTAGCTTTGGCTTTGGCTTTAC 598
consensus_12076#1 ATTCT------------------------------------------------------- 324
consensus_12076#2 AAAAAAA----------------------------------------------------- 244
*
consensus_12076#0 CACTCTCCCAACCACATTTGATGATTGAGCGATCGCCATGCCTCGGATTCTTTTGTTTCT 658
consensus_12076#1 ------------------------------------------------------------
consensus_12076#2 ------------------------------------------------------------
consensus_12076#0 TTCTTCTTCTTCTTCTTCTCTCTGCTACGCCCACGATATGACTCTGCTAGCTGCTGCCTG 718
consensus_12076#1 ------------------------------------------------------------
consensus_12076#2 ------------------------------------------------------------
consensus_12076#0 CCCGCCCTTGTACTGTACCACTGAGATCATCTACTTTTAATTTATTTTATGTTGCTGTCA 778
consensus_12076#1 ------------------------------------------------------------
consensus_12076#2 ------------------------------------------------------------
consensus_12076#0 TCATCATCATTGATTCATTGTATTATTCCATCTTTGCCCGGATCATAGATCTGTCATCTT 838
consensus_12076#1 ------------------------------------------------------------
consensus_12076#2 ------------------------------------------------------------
consensus_12076#0 TTTTNTCAAAAAAAAAAAAAAAAAAAAAAAAA 870
consensus_12076#1 --------------------------------
consensus_12076#2 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||