These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12077#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1531 fasta sequence [CTGGTGACACTCACCTTGGTGGTGATGACTTTGACAAGAGGGTTGTTGATTGGCTGGCGGGGAACTTCAAGAATGATGAAGGTATTGACCTACTAAAAGACAAGCAGGCCTTGCAACGTCTTACAGAAGCAGCTGAGAAGGCAAAGATGGAGCTATCATCCTTGACCCAAACAAATATCAGTTTACCCTTCATTACAGCTACTGCTGATGGGCCCAAGCATATCGAGACAACTCTTACCAGGGCTAAATTTGAGGAGCTATGTTCAGATCTTCTTGACAGGTTGAGGACCCCTGTGGACAATGCCCTCAGAGATGCAAAGTTGTCATTTAAAGACATAGATGAGGTGATCCTTGTCGGTGGCTCCACCAGAATTCCAGCTGTGCAGGATCTTGTGAAGAAAATGACTGGAAAGGACCCCAATGTGACTGTCAACCCTGATGAGGTTGTTGCACTTGGAGCAGCTGTTCAGGCAGGAGTGTTGTCTGGTGATGTGAGCGACATTGTTCTTCTTGATGTAACACCACTTTCTCTGGGTTTGGAGACACTGGGTGGTGTGATGACCAAGATTATCCCAAGGAACACAACTTTGCCCACCTCCAAGTCAGAGGTCTTCTCAACCGCTGCTGATGGCCAGACTAGTGTGGAGATCAATGTCCTCCAAGGAGAGAGAGAGTTTGTCAGGGACAACAAATCTCTTGGTAGCTTTCGGCTTGATGGAATTCCTCCTGCCCCACGGGGTGTTCCACAAATCGAAGTTAAGTTTGACATCGATGCCAATGGCATCCTTTCTGTCAGCGCCGTAGACAAGGGTACTGGAAAGAAGCAGGACATTACGATAACTGGTGCCAGC-ACATTGCCGAAGGATGAGGTGGAGAAGATGGTTGAAGAAGCAGAGAAGTTTGCCAAGGAGGACAAAGAGAA-GAGGGACGCAATCGACACCAAGAACCAGGCAGAGTCTGTCATCTACCAGACTGAG-AAACAATTGAAGGAGCTCGGTGACAAGGTCCCAGGCGATGTGAAGGGTAAGGTTGAGGCGAAGCTGACGGAGCTCAAGGACGCTGTTGCAGGTGGCTCGACACAGACGATGAAGGATGCTCTCGCTGCTCTGAACCAGGAAGTGATGCAGCTGGGGCAGGCCCTCTACAGCCAGCAGGGTGCCCCAGGAGCAGGACCTACCCCAGGAGCTGAT-G--CTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCCAAATAGATGATGCTTTCGTTGCTCATACATACATATTCTTATGCCCTGTAGATTCGAGTTGGCAACTGCATGGTTCTCAAAAA] [+] EMBL AK060410 [CTGGTGACACTCACCTTGGTGGTGATGACTTTGACAAGAGGGTTGTTGATTGGCTGGCGGGGAACTTCAAGAATGATGAAGGTATTGACCTACTAAAAGACAAGCAGGCCTTGCAACGTCTTACAGAAGCAGCTGAGAAGGCAAAGATGGAGCTATCATCCTTGACCCAAACAAATATCAGTTTACCCTTCATTACAGCTACTGCTGATGGGCCCAAGCATATCGAGACAACTCTTACCAGGGCTAAATTTGAGGAGCTATGTTCAGATCTTCTTGACAGGTTGAGGACCCCTGTGGACAATGCCCTCAGAGATGCAAAGTTGTCATTTAAAGACATAGATGAGGTGATCCTTGTCGGTGGCTCCACCAGAATTCCAGCTGTGCAGGATCTTGTGAAGAAAATGACTGGAAAGGACCCCAATGTGACTGTCAACCCTGATGAGGTTGTTGCACTTGGAGCAGCTGTTCAGGCAGGAGTGTTGTCTGGTGATGTGAGCGACATTGTTCTTCTTGATGTAACACCACTTTCTCTGGGTTTGGAGACACTGGGTGGTGTGATGACCAAGATTATCCCAAGGAACACAACTTTGCCCACCTCCAAGTCAGAGGTCTTCTCAACCGCTGCTGATGGCCAGACTAGTGTGGAGATCAATGTCCTCCAAGGAGAGAGAGAGTTTGTCAGGGACAACAAATCTCTTGGTAGCTTTCGGCTTGATGGAATTCCTCCTGCCCCACGGGGTGTTCCACAAATCGAAGTTAAGTTTGACATCGATGCCAATGGCATCCTTTCTGTCAGCGCCGTAGACAAGGGTACTGGAAAGAAGCAGGACATTACGATAACTGGTGCCAGC ACATTGCCGAAGGATGAGGTGGAGAAGATGGTTGAAGAAGCAGAGAAGTTTGCCAAGGAGGACAAAGAGAA GAGGGACGCAATCGACACCAAGAACCAGGCAGAGTCTGTCATCTACCAGACTGAG AAACAATTGAAGGAGCTCGGTGACAAGGTCCCAGGCGATGTGAAGGGTAAGGTTGAGGCGAAGCTGACGGAGCTCAAGGACGCTGTTGCAGGTGGCTCGACACAGACGATGAAGGATGCTCTCGCTGCTCCGAACCAGGAAGTGATGCAGCTGGGGCAGGCCCTCTACAGCCAGCAGGGTGCCCCAGGAGCAGGACCTACCCCAGGAGCTGAT G CTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCCAAATAGATGATGCTTTCG ] [+] EMBL CB626782 [CTGGTGACACTCACCTTGGTGGTGATGACTTTGACAAGAGGGTTGTTGATTGGCTGGCGGGGAACTTCAAGAATGATGAAGGTATTGACCTACTAAAAGACAAGCAGGCCTTGCAACGTCTTACAGAAGCAGCTGAGAAGGCAAAGATGGAGCTATCATCCTTGACCCAAACAAATATCAGTTTACCCTTCATTACAGCTACTGCTGATGGGCCCAAGCATATCGAGACAACTCTTACCAGGGCTAAATTTGAGGAGCTATGTTCAGATCTTCTTGACAGGTTGAGGACCCCTGTGGACAATGCCCTCAGAGATGCAAAGTTGTCATTTAAAGACATAGATGAGGTGATCCTTGTCGGTGGCTCCACCAGAATTCCAGCTGTGCAGGATCTTGTGAAGAAAATG ] [+] EMBL BQ172788 [ cGTGGAGATCAATGTCCTCCAAGGAGAGATAGAGTTTGTCAGGGACAACAAATCTCTTGGTAGCTTTCGGCTTGATGGAATTCCTCCTGCCCCACGGGGTGTTCCACAAATCGAAGTTAAGTTTGACATCGATGCCAATGGCATCCTTTCTGTCAGCGCCGTAGACAAGGGTACTGGAAAGAAGCAGGACATTACGATAACTGGTGCCAGCGTCATTGCCGAAGGATGAGGTGGAGAAGATGGTTGAAGAAGCAGAGAAGTTTGCCAAGGAGGACAAAGAGAATTAGGGACGCAATCGACACCAAGAACCAGGCAGAGTCTGTCATCTACCAGACTGAGNAAACAATCGAAGGAGCTCGGTGACAANGTCCCAGGCGATGTGAAGGGTAAGGTTGAGGCCAACCTGACGGAGCTCAAGGACNCTGTTGCAGGTGGCTCGACACAAACGATGAA GATGCTCTC CTGCTCTGAACCA CAA TGAT CA C GGNGCA GCCC CTACA CCA CA GGTG CCCA GA CANGACC A CCCA GATC GATCGCCCGGCCGCnccca ] [-] EMBL CB966604 [ ATCTACCAGACTGAG AAACAATTGAAGGAGCTCGGTGACCAGGTCCCCGNCGATGTGAAGGGTAAGGTTTAGGCGAATCTTGCGGAGCTCAAGGACGCTGTTGCAGGTGGCTCGACACAGACGATGAAGGATGCTCTCGCTGCTCTGAACCAGGAAGTGATGCAGCTGGGGCAGGCCCTCTACAGCCAGCAGGGTGCCCCCGGAGCAGGACCTACCCCCGGAGCTGAT G CTGCCGCTGGCTCTGCTGGCCCCTCCGAGAAGCCCGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCCATGAGCCGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCCCCAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCCCAATAGATGATGCTTTCGTTGCTCATACATACATATTCTTATGCCCCGTAGATTCGAGTTGGCAACTGCA ] [-] EMBL CB967368 [ CCAGACTGAG AAACCATTGAAGGAGCTCGGTGACAAGGTCCCAGGCGATGTGAAGGGTAAGGTTGAGGCGAAGCTGACGGAGCTCAAGGACGCTGTTGCAGGTGGCTCGACACAGACGATGAAGGATGCTCTCGCTGCTCTGAACCAGGAAGTGATGCAGCTGGGGCAGGCCCTCTACAGCCAGCAGGGTGCCCCAGGAGCAGGACCTACCCCAGGAGCTGAT G CTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTT GGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCCANATAGATGATGCTT ] [+] EMBL BI794884 [ aGTTGAGGCGAAGCTGACGGAGCTCAAGGACGCTGTTGCAGGTGGCTCGACACAGACGATGAAGGATGCTCTCGCTGCTCTGAACCAGGAAGTGATGCAGCTGGGGCAGGCCCTCTACAGCCAGCAGGGTGCCCCAGGAGCAGGACCTACCCCAGGAGCTGAT G CTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCC ATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCC AATAGATGATGCTTTCGTTGCTCATACATACcaaaa ] [+] EMBL CF197325 [ TCTACAGCCAGCAGGGTGCCCCAGGAGCAGGACCTACCCCAGGAGCTGAT G CTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCCAAATAGATGATGC ] [+] EMBL BI795196 [ CAGGAGCTGAT G CTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCC AATAGATGATGCTTTCGTTGCTCATACATACATATTCTTATGCCCTGTAGATTCGAGTTGGCAACTGCATGGTTCTCAAAAA] [+] EMBL AU086010 [ TGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCCAAATAGATGATGCTTTCGTTGCTCATACATACATATTCTTATGCCCTGTAGATTCGAGTTGGCAACTGCATGGTTCTCAAAAA] consensusID : consensus_12077#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [CCAGGGAAAANGGAGGGGAGCATTAANCCNAGANAGCAGATTTTTATTCACCAGATGAGAAACAATTGAGGAGTTGGTANAAGTCCCAGNGATTGAAGGTAAAGGTTGAGGGGAAGCTGACGGAGTCAAGGACGCTGTTGCAGGTGGTTNGACACAGACGATGAAGGATGNTTTCGNTGTTNTGAACCAGGAAGTGATGCAGCTGGGGCAGGCCTTNTACAGCCAGCAGGGNGCCCCAGGAGCAGGACTTACCCCAGGAGATGATGCTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTNTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCCAAATAGATGATGCTTTCGTTGCTCATACAAAAAAAAAAAA] [-] EMBL AA752195 [CCAGGGAAAANGGAGGGGAGCATTAANCCNAGANAGCAGATTTTTATTCACCAGATGAGAAACAATTGAGGAGTTGGTANAAGTCCCAGNGATTGAAGGTAAAGGTTGAGGGGAAGCTGACGGAGTCAAGGACGCTGTTGCAGGTGGTTNGACACAGACGATGAAGGATGNTTTCGNTGTTNTGAACCAGGAAGTGATGCAGCTGGGGCAGGCCTTNTACAGCCAGCAGGGNGCCCCAGGAGCAGGACTTACCCCAGGAGATGATGCTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTNTGGGCGGCGGAGTTTTTGAGTTCTGGGAATTTCACTTCCAAATAGATGATGCTTTCGTTGCTCATACAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12077#0 CTGGTGACACTCACCTTGGTGGTGATGACTTTGACAAGAGGGTTGTTGATTGGCTGGCGG 60 consensus_12077#1 ------------------------------------------------------------ consensus_12077#0 GGAACTTCAAGAATGATGAAGGTATTGACCTACTAAAAGACAAGCAGGCCTTGCAACGTC 120 consensus_12077#1 ------------------------------------------------------------ consensus_12077#0 TTACAGAAGCAGCTGAGAAGGCAAAGATGGAGCTATCATCCTTGACCCAAACAAATATCA 180 consensus_12077#1 ------------------------------------------------------------ consensus_12077#0 GTTTACCCTTCATTACAGCTACTGCTGATGGGCCCAAGCATATCGAGACAACTCTTACCA 240 consensus_12077#1 ------------------------------------------------------------ consensus_12077#0 GGGCTAAATTTGAGGAGCTATGTTCAGATCTTCTTGACAGGTTGAGGACCCCTGTGGACA 300 consensus_12077#1 ------------------------------------------------------------ consensus_12077#0 ATGCCCTCAGAGATGCAAAGTTGTCATTTAAAGACATAGATGAGGTGATCCTTGTCGGTG 360 consensus_12077#1 ------------------------------------------------------------ consensus_12077#0 GCTCCACCAGAATTCCAGCTGTGCAGGATCTTGTGAAGAAAATGACTGGAAAGGACCCCA 420 consensus_12077#1 ------------------------------------------------------------ consensus_12077#0 ATGTGACTGTCAACCCTGATGAGGTTGTTGCACTTGGAGCAGCTGTTCAGGCAGGAGTGT 480 consensus_12077#1 ------------------------------------------------------------ consensus_12077#0 TGTCTGGTGATGTGAGCGACATTGTTCTTCTTGATGTAACACCACTTTCTCTGGGTTTGG 540 consensus_12077#1 ------------------------------------------------------------ consensus_12077#0 AGACACTGGGTGGTGTGATGACCAAGATTATCCCAAGGAACACAACTTTGCCCACCTCCA 600 consensus_12077#1 ------------------------------------------------------------ consensus_12077#0 AGTCAGAGGTCTTCTCAACCGCTGCTGATGGCCAGACTAGTGTGGAGATCAATGTCCTCC 660 consensus_12077#1 ------------------------------------------------------------ consensus_12077#0 AAGGAGAGAGAGAGTTTGTCAGGGACAACAAATCTCTTGGTAGCTTTCGGCTTGATGGAA 720 consensus_12077#1 ------------------------------------------------------------ consensus_12077#0 TTCCTCCTGCCCCACGGGGTGTTCCACAAATCGAAGTTAAGTTTGACATCGATGCCAATG 780 consensus_12077#1 ------------------------------------------------------------ consensus_12077#0 GCATCCTTTCTGTCAGCGCCGTAGACAAGGGTACTGGAAAGAAGCAGGACATTACGATAA 840 consensus_12077#1 ------------------------------------------------------------ consensus_12077#0 CTGGTGCCAGCACATTGCCGAAGGATGAGGTGGAGAAGATGGTTGAAGAAGCAGAGAAGT 900 consensus_12077#1 ------------------------------------------------------------ consensus_12077#0 TTGCCAAGGAGGACAAAGAGAAGAGGGACGCAATCGACACCAAGAACCAGGCAGAGTCTG 960 consensus_12077#1 ------------CCAGGGAAAANGGAGGGGAGCATTAANCCNAGAN---AGCAGATTTT- 44 ** ** ** * * * * ** *** ***** * * consensus_12077#0 TCATCTACCAGACTGAGAAACAATTGAAGGAGCTCGGTGACAAGGTCCCAGGCGATGTGA 1020 consensus_12077#1 -TATTCACCAGA-TGAGAAACAATTGAGGAG--TTGGTA--NAAGTCCCAGN-GAT-TGA 96 ** ****** ************** * * *** * ******* *** *** consensus_12077#0 AGGGTAAGGTTGAGGCGAAGCTGACGGAGCTCAAGGACGCTGTTGCAGGTGGCTCGACAC 1080 consensus_12077#1 AGGTAAAGGTTGAGGGGAAGCTGACGGAG-TCAAGGACGCTGTTGCAGGTGGTTNGACAC 155 *** ********** ************* ********************** * ***** consensus_12077#0 AGACGATGAAGGATGCTCTCGCTGCTCTGAACCAGGAAGTGATGCAGCTGGGGCAGGCCC 1140 consensus_12077#1 AGACGATGAAGGATGNTTTCGNTGTTNTGAACCAGGAAGTGATGCAGCTGGGGCAGGCCT 215 *************** * *** ** * ******************************** consensus_12077#0 TCTACAGCCAGCAGGGTGCCCCAGGAGCAGGACCTACCCCAGGAGCTGATGCTGCCGCTG 1200 consensus_12077#1 TNTACAGCCAGCAGGGNGCCCCAGGAGCAGGACTTACCCCAGGAGATGATGCTGCCGCTG 275 * ************** **************** *********** ************** consensus_12077#0 GCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATT 1260 consensus_12077#1 GCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATT 335 ************************************************************ consensus_12077#0 TTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCG 1320 consensus_12077#1 TTACAGACAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCG 395 ************************************************************ consensus_12077#0 ACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATG 1380 consensus_12077#1 ACGAGTTTGAAATTTGTTCCACAAGATTGTAGGATCTGGGGTGTATCTTTTTGTTAGATG 455 ************************************************************ consensus_12077#0 GGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTGAGTTCTGGGAATT 1440 consensus_12077#1 GGCACCTTTGCTTCCTATTTGTGGAGTTNTGGGCGGCGGAGTTTTTGAGTTCTGGGAATT 515 **************************** ******************************* consensus_12077#0 TCACTTCCAAATAGATGATGCTTTCGTTGCTCATACATACATATTCTTATGCCCTGTAGA 1500 consensus_12077#1 TCACTTCCAAATAGATGATGCTTTCGTTGCTCATACAAAAAAAAAAAA------------ 563 ************************************* * * * consensus_12077#0 TTCGAGTTGGCAACTGCATGGTTCTCAAAAA 1531 consensus_12077#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||