Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1208 cluster # 1208       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1208#0 length = 448 sequences # 1  
consensus_1208#1 length = 445 sequences # 1  

consensusID : consensus_1208#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence
                              [GAGAAAATAATCCACCTGAAAGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCACGATAATTATTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTATCAAATTCCCATGGCGAAATTTATGGGATTCAGCAATACCGAGATAGGTTTAATAATGAGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGTATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTG]

[+] EMBL CB640199             [GAGAAAATAATCCACCTGAAAGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCACGATAATTATTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTATCAAATTCCCATGGCGAAATTTATGGGATTCAGCAATACCGAGATAGGTTTAATAATGAGTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGTATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTG]


>consensus_1208#0 GAGAAAATAATCCACCTGAAAGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATG GGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCACGATAATTATTTT TAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTATCAAATTCCCATGGC GAAATTTATGGGATTCAGCAATACCGAGATAGGTTTAATAATGAGTACCTTTGGTATTGC GGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAATTTTCACACCGCAAAAT GATTACTTCCGCGATGATCATTACCGGATTACTGGGTCTGTTAATGGCAACGTATCCACC GCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACGACGATTTTAATGCTGTG GTCGGTGTCGATTAAAGCTGCATCGTTG



consensusID : consensus_1208#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence
                              [CCCCATGTAGCTCGTTGCCACCAGCGACATGCCATACATTCCGGTCAGATAGTTGGTGGAGTAACTCAGAATGGCGTAGATGGTGAAGACGCCAAAAATCACCATGCTGCAATACCAGGTGGTGCTGATACGCAAAACGGCCAGGATGTCGCTAAGCTGGAATTTTTGTTTTTCTTCGNTATTGGCACTGCGCAGGTTGTTGTTATTCGCTACATAAAACCAGCACATAATCCCCAACAAGATGTAAACCACACTATAGATGATAATGACCGTTTTCAGGCTGGTGCTGTCATCCGGTGCAAAGCGAGAAAAGACCCACATGGTAAACACCGCCAGCGACATTACACCGACGCCGCGCAGCCCTTCCATCCAGCCCATAATTTTCCCTTGCTCGCTATGATCGCCAAGCAACGATGCAGCTTTAATCGACACCGACCACAGCATT]

[+] EMBL CF306163             [CCCCATGTAGCTCGTTGCCACCAGCGACATGCCATACATTCCGGTCAGATAGTTGGTGGAGTAACTCAGAATGGCGTAGATGGTGAAGACGCCAAAAATCACCATGCTGCAATACCAGGTGGTGCTGATACGCAAAACGGCCAGGATGTCGCTAAGCTGGAATTTTTGTTTTTCTTCGNTATTGGCACTGCGCAGGTTGTTGTTATTCGCTACATAAAACCAGCACATAATCCCCAACAAGATGTAAACCACACTATAGATGATAATGACCGTTTTCAGGCTGGTGCTGTCATCCGGTGCAAAGCGAGAAAAGACCCACATGGTAAACACCGCCAGCGACATTACACCGACGCCGCGCAGCCCTTCCATCCAGCCCATAATTTTCCCTTGCTCGCTATGATCGCCAAGCAACGATGCAGCTTTAATCGACACCGACCACAGCATT]


>consensus_1208#1 CCCCATGTAGCTCGTTGCCACCAGCGACATGCCATACATTCCGGTCAGATAGTTGGTGGA GTAACTCAGAATGGCGTAGATGGTGAAGACGCCAAAAATCACCATGCTGCAATACCAGGT GGTGCTGATACGCAAAACGGCCAGGATGTCGCTAAGCTGGAATTTTTGTTTTTCTTCGNT ATTGGCACTGCGCAGGTTGTTGTTATTCGCTACATAAAACCAGCACATAATCCCCAACAA GATGTAAACCACACTATAGATGATAATGACCGTTTTCAGGCTGGTGCTGTCATCCGGTGC AAAGCGAGAAAAGACCCACATGGTAAACACCGCCAGCGACATTACACCGACGCCGCGCAG CCCTTCCATCCAGCCCATAATTTTCCCTTGCTCGCTATGATCGCCAAGCAACGATGCAGC TTTAATCGACACCGACCACAGCATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1208#0      ----GAGAAAATAAT--CCACCTGAAAGGCGGCTTACTTTTCTCTT------TTTTTTGT 48
consensus_1208#1      CCCCATGTAGCTCGTTGCCACCAGCGACATGCCATACATTCCGGTCAGATAGTTGGTGGA 60
                            * *  *  *  ***** *  *   * * *** ** *  *       **  * * 

consensus_1208#0      CTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAAC-CCTCA 107
consensus_1208#1      GTAACTCAGAATGGCGTA-GATGGTGAAGACGCCAAAAATCACCATGCTGCAATACCAGG 119
                       **   ** *  **  ** ***    ** **  *  * *** ** *     **  **   

consensus_1208#0      CGATAATTATTTTTAG--CGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTA 165
consensus_1208#1      TGGTGCTGATACGCAAAACGGCCAGGATGTCGCTAAGCTGGAATTTTTGTTTT---TCTT 176
                       * *  * **    *   ****   * *       * ****  * ***   **   * * 

consensus_1208#0      TCAAATTCCCATGGCGAAATTTATGGGATTCAGCAATACCGAGATAG-GTTTAATAATGA 224
consensus_1208#1      CGNTATTGGCACTGCGCAGGTTGTTGTTATTCGCTACATAAAACCAGCACATAATCCCCA 236
                          ***  **  *** *  ** * *   *  ** * *   *   **    ****    *

consensus_1208#0      GTACCTTTGGTATTGCGGCCATTATTCTTTATGCCCCCAGCGGCGTTATTGCCGATAAAT 284
consensus_1208#1      ACAAGATGTAAACCACA-CTATAGATGATAATGACCGTTTTCAGGCTGGTGCTG-TCATC 294
                        *   *    *   *  * **   *  * *** **        * *  *** * * *  

consensus_1208#0      TTTCACACCGCAAAATGATTACTTCCGCGATGATCATTACCGG-ATTACTGGGTCTGTTA 343
consensus_1208#1      CGGTGCAAAGCGAGA-AAAGACCCACATGGTAAACACCGCCAGCGACATTACACCGACGC 353
                           **  ** * *  *  **   *  * * * **   ** *    * *    *     

consensus_1208#0      ATGGCAACGTATCCACCGCTGTGGGTAATGCTCTGTATTCAGATCGCCTTTGCGATAACG 403
consensus_1208#1      CGCGCAGCCCTTCCATC-CAGCCCATAATTTTCCCT-TGCTCGCTATGATCGCCA-AGCA 410
                         *** *   **** * * *    ****  **  * * *         * ** * * * 

consensus_1208#0      ACGATTTTAATGCTGTGGTCGGTGTCGATTAAAGCTGCATCGTTG 448
consensus_1208#1      ACGATGC---AGCTTTAATCGACACCGACCACAGCATT------- 445
                      *****      *** *  ***    ***  * ***          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)