These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12080#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2674 fasta sequence [TTCCTCCTCTCCTCTCTCCCTGCTTCTGATGCTGCTGTCCCAACTGTAGCAGTAGCCACCACCTTCTCCATCTCGTCGGCTCTGATTAGATTTCTTGATGTCGTGTTAGCCTTTCCCTGTTCCTTTAGCTAAAGAATTTAACGGCAGTGGGGCAGAGACGGATTGATGCCATTGTTCGATTCTTTCTCCTCCTTTTGCTTCCTTTTAAGCATTGCTTTTCCTGGCCATCCTTTTCCATTCCCATTTGTTTTGTAGGCTAGCTGCCATAGCCTTTTTCTCGTCTTCCAGGGCTAGTATCTCAGTATCTCCACTTGCTTCTCATTCTTATAATCGTCGTCGTCGTCTTCCTCTGTGATCTGTGGTTGCCTTCTCTGCTTCGCCTCCATTTCTGTTCTTGGCTGCTTGTTCTTCTTCTTGGGCGTTGTTAGCCAAGAAAGCGAATTCGTTTCTTTTTTTCTTGAGCGATTTGAGCTCGGTTCTTTCTGCTTTGGACAGCGATTGAGTGAATGAGTGAGTGAGTGAGTGAACTCATGGCCTTTCCTGCTTTCTTCATGGACAGCTCACTCTGCACAGCTCAAGGTTCTTGCTGAGTGAAGCAGAGAACTTTAGCTGCTGCCGCCATGGATAGGGCGTCAAGATCAGGTGTTCTTTCAGAGACGGCTTCTTTCGCCGACACTCCGAGGTCCATCTATTCGTCCTGCAATCTCCAGCATCTTCAGTCACAGAGTATCCGGAAGATACATGAAGGTGCCTTGGATATATCGCCACGATTCTCCTACT-GCAACCCTAATGCTAGTCAGGACAAGATACTGCACAGAAGATTCTCACTTAACTTGCCAGAGCATATGCCAGGCCATTACTCCAGGACAGTAACTGAAAGAAATCAAAAGGCTGCTTCAAAGTCCATCACAGATCTAGTCGTGGAGATTGCGGCCCTTGAGCAGGAAGTCGTCCGAAAGGAATTGCATCTGCTATCCCTCTATAGAAAAGCATTTGATCAGTATTTATCGGAGTCTGGCAGTGTTACGAGTGAGGTGGATCAAGAATTGCTGAAAAACATTGACGAGGGTGCCCTTCGTTTGAAAGACATCAAGCAATCTGCAGCCTTCAACTTACCAATAGTCTCAGATACTAAAAGTGAGGTATCAAGATCACCTTCAAGGCATTCCAGCCTTGTTAACTTCTTGAGTGCATCTATTTCTGAATATGTACCCAAGATCTCTTGCAAACTATCAGAAGACATTCTGAGCTGCATAGCTGCTGTCTACTGTAAACTCGGAAGCGTGCCACTGCAAGATAGCGAATACATAACCTCCCCCAGTCCTTCTGTTTCATCTTCAAGTACTTTTTCTCCGAGGAACCGCAATGATAGCTGGAGCCCTCGGTACAACTTCGATATCACCCCGAGCCCTCGCCAATATGGATACGAGAAAGAGAATAATGAACAAAAGAACATAGGCATGATAATTGTCCCAAGGATACGAATAGATGCTGACAAGTTTGATTACGCCTCAAAAATGCTTGAGACTATCAGGTCCCTGATTCAACGGCTTGAAAAAATTGACCCAACAAAGATGACACACGAGGAGCAACTCTGCTTTTGGATTAACATCCACAATGCTTTAGTCATGCATGCATTTTTGGCCTACGGGCTGCACGATAAACGCATGAAAAGCACGGACATGATTCTGAAGGCTGCGTATAATGTTGGTGGGCAGTCAGTAAACGCTCAAATAATCCAGAACTCAATTCTTGGATGCCAATCCCATCGTCCTTCGCTGTGGGTTCGGGCGCTGTTCGCACCAACGAAGAGATCCATGGCAGGGACAGCCAGGCATCCATATGCCCTTCAGCATCCAGAGCCAGTTGCTCATTTTGCCCTCTCCACTGGAGCATTTTCAGATCCACCTGTGAGGCTGTACAGTGCGAAGAAGATACACCAGCAGCTGGAGGTGGCGAGGACGGAGTTCATCCAGGCGAACGTGGTGGCGAGGAGGCAGGCGCTGATGCTGCCCAAGGTGCTGCACTACTACGCCAAGGACGCGGCGCTGGAGCTGCGGCATGTGGTGGAGCTGGTGTGCGAGAGCATCTCGGAGGCGCAGCAGCGGGAGATCCAGCTCTGCCTCAGGAGGAGGATCGACAAGTGCGTCGAGTGGCTGCCCTACAAGTCCTCCTTCAGATACGTTGTACATAGGGACCTGGCCGAGTAGGCATGCAGCAAAAAAGGATTTGGGTTCGTTTTATTCTTCTTCTTCTTCTTTTCTTTGTTTTCTTTTCTTTTTTGTTTGAAATTCAAATTTCAAATTGCGGTTTGGATGTGCAGTGCTGTCTCGTTGTGGTGTAAGTAAAAGAACGGATTTCTGGTGAGGGCAATGGCGTGGGTTGGGTTTGTAATGGATTTTGCGTTGTGTGTGTATGTGTGTGTAAATATAGGTGATTTGTGAGTTGTGATGCTAATAGTATGGCAGTGTCGACAACTCGACAATAAAGGGGAGAAATATTGGTAACTTTGTCACAGTTCGATTTTGTCACGAGTGCCAAAACTTTCGCCACAAAGTGAGAGTATGACATGTTGAACATGTATTCTTAGCTTAACTTCCAGAACAGTATGGCATGTTGAATCATGTGCTTAGTAAAGTGTAGCTTGTCTTAGCTTAAAAAAAAAAAAAAAAGG] [+] EMBL CB634057 [TTCCTCCTCTCCTCTCTCCCTGCTTCTGATGCTGCTGTCCCAACTGTAGCAGTAGCCACCACCTTCTCCATCTCGTCGGCTCTGATTAGATTTCTTGATGTCGTGTTAGCCTTTCCCTGTTCCTTTAGCTAAAGAATTTAACGGCAGTGGGGCAGAGACGGATTGATGCCATTGTTCGATTCTTTCTCCTCCTTTTGCTTCCTTTTAAGCATTGCTTTTCCTGGCCATCCTTTTCCATTCCCATTTGTTTTGTAGGCTAGCTGCCATAGCCTTTTTCTCGTCTTCCAGGGCTAGTATCTCAGTATCTCCACTTGCTTCTCATTCTTATAATCGTCGTCGTCGTCTTCCTCTGTGATCTGTGGTTGCCTTCTCTGCTTCGCCTCCATTTCTGTTCTTGGCTGCTTGTTCTTCTTCTTGGGCGTTGTTAGCCAAGAAAGCGAATTCGTTTCTTTTTTTCTTGAGCGATTTGAGCTCGGTTCTTTCTGCTTTGGACAGCGATTGAGTGAATGAGTGAGTGAGTGAGTGAACTCATGGCCTTTCCTGCTTTCTTCATGGACAGCTCACTCTGCACAGCTCAAGGTTCTTGCTGAGTGAAGCAGAGAACTTTAGCTGCTGCCGCCATGGATAGGGCGTCAAGATCAGGTGTTCTTTCAGAGACGGCTTCTTTCGCCGACACTCCGAGGTCCATCTATTCGTCCTGCAATCTCCAGCATCTTCAGTCACAGAGTATCCGGAAGATACATGAAGGTGCCTTGGATATATCGCCACGATTCTCCTACTGGCAAC ] [+] EMBL AK102021 [ CCCAACTGTAGCAGTAGCCACCACCTTCTCCATCTCGTCGGCTCTGATTAGATTTCTTGATGTCGTGTTAGCCTTTCCCTGTTCCTTTAGCTAAAGAATTTAACGGCAGTGGGGCAGAGACGGATTGATGCCATTGTTCGATTCTTTCTCCTCCTTTTGCTTCCTTTTAAGCATTGCTTTTCCTGGCCATCCTTTTCCATTCCCATTTGTTTTGTAGGCTAGCTGCCATAGCCTTTTTCTCGTCTTCCAGGGCTAGTATCTCAGTATCTCCACTTGCTTCTCATTCTTATAATCGTCGTCGTCGTCTTCCTCTGTGATCTGTGGTTGCCTTCTCTGCTTCGCCTCCATTTCTGTTCTTGGCTGCTTGTTCTTCTTCTTGGGCGTTGTTAGCCAAGAAAGCGAATTCGTTTCTTTTTTTCTTGAGCGATTTGAGCTCGGTTCTTTCTGCTTTGGACAGCGATTGAGTGAATGAGTGAGTGAGTGAGTGAACTCAGGGCCTTTCCTGCTTTCTTCATGGACAGCTCACTCTGCACAGCTCAAGGTTCTTGCTGAGTGAAGCAGAGAACTTTAGCTGCTGCCGCCATGGATAGGGCGTCAAGATCAGGTGTTCTTTCAGAGACGGCTTCTTTCGCCGACACTCCGAGGTCCATCTATTCGTCCTGCAATCTCCAGCATCTTCAGTCACAGAGTATCCGGAAGATACATGAAGGTGCCTTGGATATATCGCCACGATTCTCCTACT GCAAACCTAATGCTAGTCAGGACAAGATACTGCACAGAAGATTCTCACTTAACTTGCCAGAGCATATGCCAGGCCATTACTCCAGGACAGTAACTGAAAGAAATCAAAAGGCTGCTTCAAAGTCCATCACAGATCTAGTCGTGGAGATTGCGGCCCTTGAGCAGGAAGTCGTCCGAAAGGAATTGCATCTGCTATCCCTCTATAGAAAAGCATTTGATCAGTATTTATCGGAGTCTGGCAGTGTTACGAGTGAGGTGGATCAAGAATTGCTGAAAAACATTGACGAGGGTGCCCTTCGTTTGAAAGACATCAAGCAATCTGCAGCCTTCAACTTACCAATAGTCTCAGATACTAAAAGTGAGGTATCAAGATCACCTTCAAGGCATTCCAGCCTTGTTAACTTCTTGAGTGCATCTATTTCTGAATATGTACCCAAGATCTCTTGCAAACTATCAGAAGACATTCTGAGCTGCATAGCTGCTGTCTACTGTAAACTCGGAAGCGTGCCACTGCAAGATAGCGAATACATAACCTCCCCCAGTCCTTCTGTTTCATCTTCAAGTACTTTTTCTCCGAGGAACCGCAATGATAGCTGGAGCCCTCGGTACAACTTCGATATCACCCCGAGCCCTCGCCAATATGGATACGAGAAAGAGAATAATGAACAAAAGAACATAGGCATGATAATTGTCCCAAGGATACGAATAGATGCTGACAAGTTTGATTACGCCTCAAAAATGCTTGAGACTATCAGGTCCCTGATTCAACGGCTTGAAAAAATTGACCCAACAAAGATGACACACGAGGAGCAACTCTGCTTTTGGATTAACATCCACAATGCTTTAGTCATGCATGCATTTTTGGCCTACGGGCTGCACGATAAACGCATGAAAAGCACGGACATGATTCTGAAGGCTGCGTATAATGTTGGTGGGCAGTCAGTAAACGCTCAAATAATCCAGAACTCAATTCTTGGATGCCAATCCCATCGTCCTTCGCTGTGGGTTCGGGCGCTGTTCGCACCAACGAAGAGATCCATGGCAGGGACAGCCAGGCATCCATATGCCCTTCAGCATCCAGAGCCAGTTGCTCATTTTGCCCTCTCCACTGGAGCATTTTCAGATCCACCTGTGAGGCTGTACAGTGCGAAGAAGATACACCAGCAGCTGGAGGTGGCGAGGACGGAGTTCATCCAGGCGAACGTGGTGGCGAGGAGGCAGGCGCTGATGCTGCCCAAGGTGCTGCACTACTACGCCAAGGACGCGGCGCTGGAGCTGCGGCATGTGGTGGAGCTGGTGTGCGAGAGCATCTCGGAGGCGCAGCAGCGGGAGATCCAGCTCTGCCTCAGGAGGAGGATCGACAAGTGCGTCGAGTGGCTGCCCTACAAGTCCTCCTTCAGATACGTTGTACATAGGGACCTGGCCGAGTAGGCATGCAGCAAAAAAGGATTTGGGTTCGTTTTATTCTTCTTCTTCTTCTTTTCTTTGTTTTCTTTTCTTTTTTGTTTGAAATTCAAATTTCAAATTGCGGTTTGGATGTGCAGTGCTGTCTCGTTGTGGTGTAAGTAAAAGAACGGATTTCTGGTGAGGGCAATGGCGTGGGTTGGGTTTGTAATGGATTTTGCGTTGTGTGTGTATGTGTGTGTAAATATAGGTGATTTGTGAG ] [-] EMBL CB634058 [ TCATTTTGCCCTCTCCACTGGAGCATTTTCAGATCCACCTGTGAGGCTGTACAGTGCGAAGAAGATACACCAGCAGCTGGAGGTGGCGAGGACGGAGTTCATCCAGGCGAACGTGGTGGCGAGGAGGCAGGCGCTGATGCTGCCCAAGGTGCTGCACTACTACGCCAAGGACGCGGCGCTGGAGCTGCGGCATGTGGTGGAGCTGGTGTGCGAGAGCATCTCGGAGGCGCAGCAGCGGGAGATCCAGCTCTGCCTCAGGAGGAGGATCGACAAGTGCGTCGAGTGGCTGCCCTACAAGTCCTCCTTCAGATACGTTGTACATAGGGACCTGGCCGAGTAGGCATGCAGCAAAAAAGGATTTGGGTTCGTTTTATTCTTCTTCTTCTTCTTTTCTTTGTTTTCTTTTCTTTTTTGTTTGAAATTCAAATTTCAAATTGCGGTTTGGATGTGCAGTGCTGTCTCGTTGTGGTGTAAGTAAAAGAACAGATTTCTGGTGAGGGCAATGGCGTGGGTTGGGTTTGTAATGGATTTTGCGTTGTGTGTGTATGTGTGTGTAAATATAGGTGATTTGTGAGTTGTGATGCTAATAGTATGGCAGTGTCGACAACTCGACAATAAAGGGGAGAAATATTGGTAACTTTGTCACAGTTCGATTTTGTCACGAGTGCCAAAACTTTCGCCACAAAGTGAGAGTATGACATGTTGAACATGTATTCTTAGCTTAACTTCCAGAACAGTATGGCATGTTGAATCATGTGCTTAGTAAAGTGTAGCTTGTCTTAGCTTAAAAAAAAAAAAAAAAGG] consensusID : consensus_12080#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1234 fasta sequence [GGACACGATTCTGAAGGCTGCGTATAATGTTGGTGGGCAGTCAGTAAACGCTCAAATAATCCAGAACTCAATTCTTGGATGCCAATCCCATCGTCCTTCGCTGTGGGTTCGGGCGCTGTTCGCACCAACGAAGAGATCCATGGCAGGGACAGCCAGGCATCCATATGCCCTTCAGCATCCAGAGCCAGTTGCTCATTTTGCCCTCTCCACTGGAGCATTTTCAGATCCACCTGTAAGCCACCACTTCCAGCCATACTTCAATCAAGAAATTTTTACGGTCTTCGAGTAGGTACCATATTTTTCTATCGCAAAATTTGGTACTACCCAAGGTACTACTACAAGTACAAGGTAGTACCAGATTCAACGCTAGAAAAAGCTGTACTTCCTGTACCTCTCAAGGACGGTAAAAAATGACTCCAAACATCCATGTAAAAAAAAAAGGAAATATCAAAGCTGTAAGTTGGATCTTGTGTTTGTAGGTGAGGCTGTACAGTGCGAAGAAGATACACCAGCAGCTGGAGGTGGCGAGGACGGAGTTCATCCAGGCGAACGTGGTGGCGAGGAGGCAGGCGCTGATGCTGCCCAAGGTGCTGCACTACTACGCCAAGGACGCGGCGCTGGAGCTGCGGCATGTGGTGGAGCTGGTGTGCGAGAGCATCTCGGAGGCGCAGCAGCGGGAGATCCAGCTCTGCCTCAGGAGGAGGATCGACAAGTGCGTCGAGTGGCTGCCCTACAAGTCCTCCTTCAGATACGTTGTACATAGGGACCTGGCCGAGTAGGCATGCAGCAAAAAAGGATTTGGGTTCGTTTTATTCTTCTTCTTCTTCTTTTCTTTGTTTTCTTTTCTTTTTTGTTTGAAATTCAAATTTCAAATTGCGGTTTGGATGTGCAGTGCTGTCTCGTTGTGGTGTAAGTAAAAGAACAGATTTTTGGTGAGGGCAATGGCGTGGGTTGGGTTTGTAATGGATTTTGCGTTGTGTGTGTATGTGTGTGTAAATATAGGTGATTTGTGAGTTGTGATGCTAATAGTATGGCAGTGTCGACAACTCGACAATAAAGGGGAGAAATATTGGTAACTTTGTCACAGTTCGATTTTGTCACGAGTGCCAAAACTTTCGCCACAAAGTGAGAGTATGACATGTTGAACATGTATTCTTAGCTTAACTTCCAGAACAGTATGGCATGTTGAATCATGTGCTTAATAAAGTGTAGCTTGTCTTAAAAAAAAAAAGGA] [+] EMBL CB634133 [GGACACGATTCTGAAGGCTGCGTATAATGTTGGTGGGCAGTCAGTAAACGCTCAAATAATCCAGAACTCAATTCTTGGATGCCAATCCCATCGTCCTTCGCTGTGGGTTCGGGCGCTGTTCGCACCAACGAAGAGATCCATGGCAGGGACAGCCAGGCATCCATATGCCCTTCAGCATCCAGAGCCAGTTGCTCATTTTGCCCTCTCCACTGGAGCATTTTCAGATCCACCTGTAAGCCACCACTTCCAGCCATACTTCAATCAAGAAATTTTTACGGTCTTCGAGTAGGTACCATATTTTTCTATCGCAAAATTTGGTACTACCCAAGGTACTACTACAAGTACAAGGTAGTACCAGATTCAACGCTAGAAAAAGCTGTACTTCCTGTACCTCTCAAGGACGGTAAAAAATGACTCCAAACATCCATGTAAAAAAAAAAGGAAATATCAAAGCTGTAAGTTGGATCTTGTGTTTGTAGGTGAGGCTGTACAGTGCGAAGAAGATACACCAGCAGCTGGAGGTGGCGAGGACGGAGTTCATCCAGGCGAACGTGGTGGCGAGGAGGCAGGCGCTGATGCTGCCCAAGGTGCTGCACTACTACGCCAAGGACGCGGCGCTGGAGCTGCGGCATGTGGTGGAGCTGGTGTGCGAGAGCATCTCGGAGGCGCAGCAGCGGGAGATCCAGCTCTGCCTCAGGAGGAGGATCGACAAGTGCGTCGAGTGGCTGCCCTACAAGTCCTCCTTCAGATACGTTGTACATAGGGACCTGGCCGAG ] [+] EMBL CB635107 [GGACATCATTCTGAAGGCTGCGTATAATGTTGGTGGGCAGTCAGTAAACGCTCAAATAATCCAGAACTCAATTCTTGGATGCCAATCCCATCGTCCTTCGCTGTGGGTTCGGGCGCTGTTCGCACCAACGAAGAGATCCATGGCAGGGACAGCCAGGCATCCATATGCCCTTCAGCATCCAGAGCCAGTTGCTCATTTTGCCCTCTCCACTGGAGCATTTTCAGATCCACCTGTAAGCCACCACTTCCAGCCATACTTCAATCAAGAAATTTTTACGGTCTTCGAGTAGGTACCATATTTTTCTATCGCAAAATTTGGTACTACCCAAGGTACTACTACAAGTACAAGGTAGTACCAGATTCAACGCTAGAAAAAGCTGTACTTCCTGTACCTCTCAAGGACGGTAAAAAATGACTCCAAACATCCATGTAAAAAAAAAAGGAAATATCAAAGCTGTAAGTTGGATCTTGTGTTTGTAGGTGAGGCTGTACAGTGCGAAGAAGATACACCAGCAGCTGGAGGTGGCGAGGACGGAGTTCATCCAGGCGAACGTGGTGGCGAGGAGGCAGGCGCTGATGCTGCCCAAGGTGCTGCACTACTACGCCAAGGACGCGGCGCTGGAGCTGCGGCATGTGGTGGAGCTGGTGTGCGAGAGCATCTCGGAGGCGCAGCAGCGGGAGATCCAGCTCTGCCTCAGGAGGAGGATCGACAAGTGCGTCGAGTGGCTGCCCTACAAGTCCTCCTTCAGATA ] [-] EMBL CB634134 [ CTCCAAACATCCATGTAAAAAAAAAAGGAAATATCAAAGCTGTAAGTTGGATCTTGTGTTTGTAGGTGAGGCTGTACAGTGCGAAGAAGATACACCAGCAGCTGGAGGTGGCGAGGACGGAGTTCATCCAGGCGAACGTGGTGGCGAGGAGGCAGGCGCTGATGCTGCCCAAGGTGCTGCACTACTACGCCAAGGACGCGGCGCTGGAGCTGCGGCATGTGGTGGAGCTGGTGTGCGAGAGCATCTCGGAGGCGCAGCAGCGGGAGATCCAGCTCTGCCTCAGGAGGAGGATCGACAAGTGCGTCGAGTGGCTGCCCTACAAGTCCTCCTTCAGATACGTTGTACATAGGGACCTGGCCGAGTAGGCATGCAGCAAAAAAGGATTTGGGTTCGTTTTATTCTTCTTCTTCTTCTTTTCTTTGTTTTCTTTTCTTTTTTGTTTGAAATTCAAATTTCAAATTGCGGTTTGGATGTGCAGTGCTGTCTCGTTGTGGTGTAAGTAAAAGAACAGATTTTTGGTGAGGGCAATGGCGTGGGTTGGGTTTGTAATGGATTTTGCGTTGTGTGTGTATGTGTGTGTAAATATAGGTGATTTGTGAGTTGTGATGCTAATAGTATGGCAGTGTCGACAACTCGACAATAAAGGGGAGAAATATTGGTAACTTTGTCACAGTTCGATTTTGTCACGAGTGCCAAAACTTTCGCCACAAAGTGAGAGTATGACATGTTGAACATGTATTCTTAGCTTAACTTCCAGAACAGTATGGCATGTTGAATCATGTGCTTAATAAAGTGTAGCTTGTCTTAAAAAAAAAAAGGA] [-] EMBL CB635108 [ AGTTGGATCTTGTGTTTGTAGGTGAGGCTGTACAGTGCGAAGAAGATACACCAGCAGCTGGAGGTGGCGAGGACGGAGTTCATCCAGGCGAACGTGGTGGCGAGGAGGCAGGCGCTGATGCTGCCCAAGGTGCTGCACTACTACGCCAAGGACGCGGCGCTGGAGCTGCGGCATGTGGTGGAGCTGGTGTGCGAGAGCATCTCGGAGGCGCAGCAGCGGGAGATCCAGCTCTGCCTCAGGAGGAGGATCGACAAGTGCGTCGAGTGGCTGCCCTACAAGTCCTCCTTCAGATACGTTGTACATAGGGACCTGGCCGAGTAGGCATGCAGCAAAAAAGGATTTGGGTTCGTTTTATTCTTCTTCTTCTTCTTTTCTTTGTTTTCTTTTCTTTTTTGTTTGAAATTCAAATTTCAAATTGCGGTTTGGATGTGCAGTGCTGTCTCGTTGTGGTGTAAGTAAAAGAACAGATTTCTGGTGAGGGCAATGGCGTGGGTTGGGTTTGTAATGGATTTTGCGTTGTGTGTGTATGTGTGTGTAAATATAGGTGATTTGTGAGTTGTGATGCTAATAGTATGGCAGTGTCGACAACTCGACAATAAAGGGGAGAAATATTGGTAACTTTGTCACAGTTCGATTTTGTCACGAGTGCCAAAACTTTCGCCACAAAGTGAGAGTATGACATGTTGAACATGTATTCTTAGCTTAACTTCCAGAACAGTATGGCATGTTGAATCAGGTGCTTAATAAAGTGTA ] consensusID : consensus_12080#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [CTCCTCGCCACCACGTTCGCCTGGATGAACTCCGTCCTCGCCACCTCCAGCTGCTGGTGTATCTTCTTCGCACTGTACAGCCTCACCTACAAACACAAGATCCAACTTACAGCTTTGATATTTCCTTTTTTTTTTACATGGATGTTTGGAGTCATTTTTTACCGTCCTTGAGAGGTACAGGAAGTACAGCTTTTTCCTTGAGAGGTACAGGAAGTACAGCTTTTTCTAGCGTTGAATCTGGTACTACCTTGTACTTGTAGTAGTACCTTGGGTAGTACCAAATTTTGCGATAGAAAAATATGGTACCTACTCGAAGACCGTAAAAATTTCTTGATTGAAGTATGGCTGGAAGTGGTGGCTTACAGGTGGATCTGA] [+] EMBL CA752974 [CTCCTCGCCACCACGTTCGCCTGGATGAACTCCGTCCTCGCCACCTCCAGCTGCTGGTGTATCTTCTTCGCACTGTACAGCCTCACCTACAAACACAAGATCCAACTTACAGCTTTGATATTTCCTTTTTTTTTTACATGGATGTTTGGAGTCATTTTTTACCGTCCTTGAGAGGTACAGGAAGTACAGCTTTTTCCTTGAGAGGTACAGGAAGTACAGCTTTTTCTAGCGTTGAATCTGGTACTACCTTGTACTTGTAGTAGTACCTTGGGTAGTACCAAATTTTGCGATAGAAAAATATGGTACCTACTCGAAGACCGTAAAAATTTCTTGATTGAAGTATGGCTGGAAGTGGTGGCTTACAGGTGGATCTGA] consensusID : consensus_12080#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 347 fasta sequence [ACAACGCAATCTTGTGCACCGTTTTCGCAGTGGGTTCGGGCGCTGTTCGCACCAACGAAGAGATCCATGGCAGGGACAGCCAGGCATCCATATGCCCTTCAGCATCCAGAGCCAGTTGCTCATTTTGCCCTCTCCACTGGAGCATTTTCAGATCCACCTGTAAGCCACCACTTCCAGCCATACTTCAATCAAGAAATTTTTACGGTCTTCGAGTAGGTACCATATTTTTCTATCGCAAAATTTGGTACTACCCAAGGTACTACTACAAGTACAAGGTAGTACCAGATTCAACGCTAGAAAAAGCTGTACTTCCTGTACCTCTCAAGGACGGTAAAAAATGACTCCAA] [+] EMBL CB632638 [ACAACGCAATCTTGTGCACCGTTTTCGCAGTGGGTTCGGGCGCTGTTCGCACCAACGAAGAGATCCATGGCAGGGACAGCCAGGCATCCATATGCCCTTCAGCATCCAGAGCCAGTTGCTCATTTTGCCCTCTCCACTGGAGCATTTTCAGATCCACCTGTAAGCCACCACTTCCAGCCATACTTCAATCAAGAAATTTTTACGGTCTTCGAGTAGGTACCATATTTTTCTATCGCAAAATTTGGTACTACCCAAGGTACTACTACAAGTACAAGGTAGTACCAGATTCAACGCTAGAAAAAGCTGTACTTCCTGTACCTCTCAAGGACGGTAAAAAATGACTCCAA] [+] EMBL CB634285 [ACAACGGAATCTTGTGCACCGTTTTCGCAGTGGGTTCGGGCGCTGTTCGCACCAACGAAGAGATCCATGGCAGGGACAGCCAGGCATCCATATGCCCTTCAGCATCCAGAGCCAGTTGCTCATTTTGCCCTCTCCACTGGAGCATTTTCAGATCCACCTGTAAGCCACCACTTCCAGCCATACTTCAATCAAGAAATTTTTACGGTCTTCGAGTAGGTACCATATTTTTCTATCGCAAAATTTGGTACTACCCAAGGTACTACTACAAGTACAAGGTAGTACCAGATTCAACGCTAGAAAAAGCTGTACTTCCTGTACCTCTCAAGGACGGTAAAAAATGACTCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12080#0 TTCCTCCTCTCCTCTCTCCCTGCTTCTGATGCTGCTGTCCCAACTGTAGCAGTAGCCACC 60 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 ACCTTCTCCATCTCGTCGGCTCTGATTAGATTTCTTGATGTCGTGTTAGCCTTTCCCTGT 120 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 TCCTTTAGCTAAAGAATTTAACGGCAGTGGGGCAGAGACGGATTGATGCCATTGTTCGAT 180 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 TCTTTCTCCTCCTTTTGCTTCCTTTTAAGCATTGCTTTTCCTGGCCATCCTTTTCCATTC 240 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 CCATTTGTTTTGTAGGCTAGCTGCCATAGCCTTTTTCTCGTCTTCCAGGGCTAGTATCTC 300 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 AGTATCTCCACTTGCTTCTCATTCTTATAATCGTCGTCGTCGTCTTCCTCTGTGATCTGT 360 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 GGTTGCCTTCTCTGCTTCGCCTCCATTTCTGTTCTTGGCTGCTTGTTCTTCTTCTTGGGC 420 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 GTTGTTAGCCAAGAAAGCGAATTCGTTTCTTTTTTTCTTGAGCGATTTGAGCTCGGTTCT 480 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 TTCTGCTTTGGACAGCGATTGAGTGAATGAGTGAGTGAGTGAGTGAACTCATGGCCTTTC 540 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 CTGCTTTCTTCATGGACAGCTCACTCTGCACAGCTCAAGGTTCTTGCTGAGTGAAGCAGA 600 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 GAACTTTAGCTGCTGCCGCCATGGATAGGGCGTCAAGATCAGGTGTTCTTTCAGAGACGG 660 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 CTTCTTTCGCCGACACTCCGAGGTCCATCTATTCGTCCTGCAATCTCCAGCATCTTCAGT 720 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 CACAGAGTATCCGGAAGATACATGAAGGTGCCTTGGATATATCGCCACGATTCTCCTACT 780 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 GCAACCCTAATGCTAGTCAGGACAAGATACTGCACAGAAGATTCTCACTTAACTTGCCAG 840 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 AGCATATGCCAGGCCATTACTCCAGGACAGTAACTGAAAGAAATCAAAAGGCTGCTTCAA 900 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 AGTCCATCACAGATCTAGTCGTGGAGATTGCGGCCCTTGAGCAGGAAGTCGTCCGAAAGG 960 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 AATTGCATCTGCTATCCCTCTATAGAAAAGCATTTGATCAGTATTTATCGGAGTCTGGCA 1020 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 GTGTTACGAGTGAGGTGGATCAAGAATTGCTGAAAAACATTGACGAGGGTGCCCTTCGTT 1080 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 TGAAAGACATCAAGCAATCTGCAGCCTTCAACTTACCAATAGTCTCAGATACTAAAAGTG 1140 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 AGGTATCAAGATCACCTTCAAGGCATTCCAGCCTTGTTAACTTCTTGAGTGCATCTATTT 1200 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 CTGAATATGTACCCAAGATCTCTTGCAAACTATCAGAAGACATTCTGAGCTGCATAGCTG 1260 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 CTGTCTACTGTAAACTCGGAAGCGTGCCACTGCAAGATAGCGAATACATAACCTCCCCCA 1320 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 GTCCTTCTGTTTCATCTTCAAGTACTTTTTCTCCGAGGAACCGCAATGATAGCTGGAGCC 1380 consensus_12080#1 ------------------------------------------------------------ consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 CTCGGTACAACTTCGATATCACCCCGAGCCCTCGCCAATATGGATACGAGAAAGAGAATA 1440 consensus_12080#1 -----------------------------------------GGACACGATTCTGAAGGCT 19 consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 ATGAACAAAAGAACATAGGCA--TGATAATTGTCCCAAGGATACGAATAGATGCTGACAA 1498 consensus_12080#1 GCGTATAAT-GTTGGTGGGCAGTCAGTAAACGCTCAAATAATCCAGA-----ACTCAATT 73 consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 GTTTGATTACGCCTCAAAAATGCTTGAGACTATCAGGTCCCTGATTCAACGGCTTGAAAA 1558 consensus_12080#1 CTTGGATGCCAATCCCATCGTCCTTC--GCTGT-GGGTTCGGGCGCTGTTCGCACCAACG 130 consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 AATTGACCCAACAAAGATGACACACGAGGAGCAACTCTGCTTTTGGATTAACATCCACAA 1618 consensus_12080#1 AAGAGATCCATGGCAGG-GACAGCCAGGCATCCA-TATGCCCTT----CAGCATCCAGAG 184 consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 TGCTTTAGTCATGCATGCATTTTTGGCCTACGGGCTGCACGATAAACGCATGAAAAGCAC 1678 consensus_12080#1 CCAGTTGCTCAT-TTTGCCCTCTCCACTGGAGCATTTTCAGATC--CACCTGTAAGCCAC 241 consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 GGACATGATTCTGAAGGCTG-CGTATAATGTTGGTGGGCAGTCAGTAAACGCTCAAATAA 1737 consensus_12080#1 CACTTCCAGCCATACTTCAATCAAGAAATTTTTACGGTCTTCGAGTAGGTACCATATTTT 301 consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 TCCAGAACTCAATTCTTGGATGCCAATCCCATCGTCCTTCGCTGTGGGTTCGGGCGCTGT 1797 consensus_12080#1 TCTATCGCAAAATTTGGTACTACCCAAGGTACTA-CTACAAGTACAAGGTAGTACCAGAT 360 consensus_12080#3 ---ACAACGCAATCTTGTG----------CACCG-TTTTCGCAGTGGGTTCGGGCGCTGT 46 consensus_12080#2 ------------CTCCTCG---------CCACCA-CGTTCGCC-TGGAT--GAACTCCGT 35 * * * * consensus_12080#0 TCGCACCAACGAAGAGATCCATGGCAGGGACAGCCAGGCATCCATA-----TGCCCTTCA 1852 consensus_12080#1 TCAACGCTAGAAAAAGCTGTACTTCCTGTACCTCTCAAGGACGGTAAAAAATGACTCCAA 420 consensus_12080#3 TCGCACCAACGAAGAGATCCATGGCAGGGACAGCCAGGCATCCATA-----TGCCCTTCA 101 consensus_12080#2 CCTCGCCACCTCCAG---CTGCTGGTGTATCTTCTTCGCA-CTGTACAGCCTCACCTACA 91 * * * * * ** * * * consensus_12080#0 GCATCCA-GAGCCAGTTGCTCATTTTGCCCTCTCCACTGGAGCATTTTCAGATCCACCT- 1910 consensus_12080#1 ACATCCATGTAAAAAAAAAAGGAAATATCAAAGCTGTAAGTTGGATCTTGTGTTTGTAG- 479 consensus_12080#3 GCATCCA-GAGCCAGTTGCTCATTTTGCCCTCTCCACTGGAGCATTTTCAGATCCACCT- 159 consensus_12080#2 A-ACACAAGATCCAACTTACAGCTTTGATATTTCCTTTTTTTTTTACATGGATGTTTGGA 150 * ** * * * * * consensus_12080#0 GTGAGGCTGTACAGTGCGAAGAAGATACACCAGCAGCTGGAGGTGGCGAGGACGGAGTTC 1970 consensus_12080#1 GTGAGGCTGTACAGTGCGAAGAAGATACACCAGCAGCTGGAGGTGGCGAGGACGGAGTTC 539 consensus_12080#3 GTAAGCCACCACTTCC------AGCCATACTTCAATCAAGAAATTTTT---ACGGTCTTC 210 consensus_12080#2 GTCATTTTTTACCGTCCTTGAGAGGTACA---GGAAGTACAGCTTTTTCCTTGAGAG--- 204 ** * ** ** * * * * * * consensus_12080#0 ATCCAGGCGAACGTGGTGGCGAGGAGGCAGGCGCTGATGCTGCCCAAGGTGCTGCACTAC 2030 consensus_12080#1 ATCCAGGCGAACGTGGTGGCGAGGAGGCAGGCGCTGATGCTGCCCAAGGTGCTGCACTAC 599 consensus_12080#3 GAGTAGGT--ACCATATTTTTCTATCGCAAAATTTGGTACTACCCAAGGT-----ACTAC 263 consensus_12080#2 GTACAGGAAGTACAGCTTTTTCTAGCGTTGAATCTGGTACTACCTTGTAC-TTGTAGTAG 263 *** * * ** * ** ** * ** consensus_12080#0 TACGCCAAGGACGCGGCGCTGGAGCTGCGGCATGTGGTGGAGCTGGTGTGCGAGAGCATC 2090 consensus_12080#1 TACGCCAAGGACGCGGCGCTGGAGCTGCGGCATGTGGTGGAGCTGGTGTGCGAGAGCATC 659 consensus_12080#3 TACAAGTACAAGGTAGTACCAGA--TTCAACGCTAGAAAAAGCTGTACTTCCTGTACCTC 321 consensus_12080#2 TACCTTGG----GTAGTACCAAA--TTTTGCGATAGAAAAATATGGTAC-------CTAC 310 *** * * * * * * * * ** * * consensus_12080#0 TCGGAGGCGCAGCAGCGGGA--GATCCAGCTCTGCCTCAGGAGGAGGATCGACAAGTGCG 2148 consensus_12080#1 TCGGAGGCGCAGCAGCGGGA--GATCCAGCTCTGCCTCAGGAGGAGGATCGACAAGTGCG 717 consensus_12080#3 TCAAGGACGGTAAAAAATGA--C-TCCAA------------------------------- 347 consensus_12080#2 TCGAAGACCGTAAAAATTTCTTGATTGAAGTATGGCTGGAAGTGGTGGCTTACAGGTGGA 370 ** * * * * * consensus_12080#0 TCGAGTGGCTGCCCTACAAGTCCTCCTTCAGATACGTTGTACATAGGGACCTGGCCGAGT 2208 consensus_12080#1 TCGAGTGGCTGCCCTACAAGTCCTCCTTCAGATACGTTGTACATAGGGACCTGGCCGAGT 777 consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 TCTGA------------------------------------------------------- 375 consensus_12080#0 AGGCATGCAGCAAAAAAGGATTTGGGTTCGTTTTATTCTTCTTCTTCTTCTTTTCTTTGT 2268 consensus_12080#1 AGGCATGCAGCAAAAAAGGATTTGGGTTCGTTTTATTCTTCTTCTTCTTCTTTTCTTTGT 837 consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 TTTCTTTTCTTTTTTGTTTGAAATTCAAATTTCAAATTGCGGTTTGGATGTGCAGTGCTG 2328 consensus_12080#1 TTTCTTTTCTTTTTTGTTTGAAATTCAAATTTCAAATTGCGGTTTGGATGTGCAGTGCTG 897 consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 TCTCGTTGTGGTGTAAGTAAAAGAACGGATTTCTGGTGAGGGCAATGGCGTGGGTTGGGT 2388 consensus_12080#1 TCTCGTTGTGGTGTAAGTAAAAGAACAGATTTTTGGTGAGGGCAATGGCGTGGGTTGGGT 957 consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 TTGTAATGGATTTTGCGTTGTGTGTGTATGTGTGTGTAAATATAGGTGATTTGTGAGTTG 2448 consensus_12080#1 TTGTAATGGATTTTGCGTTGTGTGTGTATGTGTGTGTAAATATAGGTGATTTGTGAGTTG 1017 consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 TGATGCTAATAGTATGGCAGTGTCGACAACTCGACAATAAAGGGGAGAAATATTGGTAAC 2508 consensus_12080#1 TGATGCTAATAGTATGGCAGTGTCGACAACTCGACAATAAAGGGGAGAAATATTGGTAAC 1077 consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 TTTGTCACAGTTCGATTTTGTCACGAGTGCCAAAACTTTCGCCACAAAGTGAGAGTATGA 2568 consensus_12080#1 TTTGTCACAGTTCGATTTTGTCACGAGTGCCAAAACTTTCGCCACAAAGTGAGAGTATGA 1137 consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 CATGTTGAACATGTATTCTTAGCTTAACTTCCAGAACAGTATGGCATGTTGAATCATGTG 2628 consensus_12080#1 CATGTTGAACATGTATTCTTAGCTTAACTTCCAGAACAGTATGGCATGTTGAATCATGTG 1197 consensus_12080#3 ------------------------------------------------------------ consensus_12080#2 ------------------------------------------------------------ consensus_12080#0 CTTAGTAAAGTGTAGCTTGTCTTAGCTTAAAAAAAAAAAAAAAAGG 2674 consensus_12080#1 CTTAATAAAGTGTAGCTTGTCTTA----AAAAAAAAAAGGA----- 1234 consensus_12080#3 ---------------------------------------------- consensus_12080#2 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||