These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12081#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1727 fasta sequence [CAAAAAATAATTCGGGCAGGATCTCCCCGAGGCCCCCGTCCCCTCCTCGTCGACTCCCGTCTCGTCTCCTCGCGAGTTCACCTGCCGTCTGCGCCGATCTCCGATTCTCTATCCGGCGAGCAGGGGGACGCCGCCGTCCTGCTGTTTCCGCCGCATCCTGGTTTGGGAGGTTCAACTGAGCCCCCATGTCGCAGGAGAGGAGCCAGTCGCAGAGCCCCCGGTCGCCGGCGTCGGCGGCTGGGGTGCCGTTCCTGTCGATCTCCGTCACAGATCCTGTGAAGATGGGTACCGGAGTCCAGGCCTACATCTCCTATCGCGTCATCACCAAGACCAACCTGCCTGACTTTGAGGGGCAAGAGAAAATTGTTATCCGGCGCTATAGTGACTTTGAGTGGTTGCATGATCGTCTTGCTGAGAAGTACAAAGGCATTTTTATACCTCCCCTTCCAGAGAAGAATGCTGTTGAAAAATTCCGGTTTAGCAAAGAGTTCATTGAATTACGGCGTCAAGCCCTGGATCTATTTGTCAATAGAATAGCTTCACATCCTGAACTCAAGCAAAGTGGAGATTTGAAGATATTTTTGCAGGCAGATGAAGAGAAAATGGATAGAGAAAGGTCTTATGAAACTGGTATATTCAAGAAGCCTTCTGATTTCTTACAGATGTTTAAGGATGTACAATCAAAAGTCAGTGATGTTGTTCTGGGAAAAGAAAAGCCTGTGGAGGAATCTAGTCCTGAATATGAAAAGCTTAAAAATTACATATTTGAGCTAGAAAACCATTTAGCAGAGGCACAGAAACAAGCATTCCGTCTTGTGAAAAGACACCGAGAACTTGGGCAATCTTTGGC-GGACTTTGGTAAGGCTATTAAGCTTTTAGGTGCTTGCGAAGGGGACTCCTTGGAAAAAGTTTTTTCAGAAGTTGGATCAAAGTCAGAGATGTTATCAGTAAAGCTGCAAAGAGAGGCAGACAACCTTCTCTTTAACTTTGAAGAGCCTTTGAAAGATTATGTACGTGCTGTGCAGTCAATAAAAGCAACTATGGTGGATCGAGCCAATGCTTTCAGGCAGCATCATGATTTATTTCAGCAGAAGGAATATAAAGGGGTTAATCTCGAAAAATTGAAGTTCGTGAACCCTGATAAATTTTCTGAACTAGAA-GCTGAGGTCCGAGAGTTGACAGCAGACAGTGAG-GAGGCTA-CAAAGAGGTTTGAGCACATAGTTGCAGTAAT-GAATGAAGAGCTTGCACGTTTCCAAGAGCAGAAAACAGCTGATATT-GGATTC-GCATTCCAT-GAATTT-GCCAAAGGCCAAGCA-AAGTTAGCTAAAGATATTGCTGATGCATGGCGAGGCGTCCTCCCAAAGCTCGAAGCCTGTTCCACTTCATAAATGCTCCGTGTTAGCTTATGTTGTTTGGT-TTAGTGGTTGACAATCGGCGAGTTTTAGGCTGTTTTTTCCCCAGGCCA-CCTTGACACCGCGTCCTGTATACTTCAACTGACTCTGAAAAAGGGCTAGTTTTTAGATACAATTGACATCATTTCCTGCCTGCTCTGTGTGTATCCTTCTTTTTACGACCAATCAATATTGCTACTGGAATATCTCAAGAATGATGCAGTAAAGGGAAAATAAACTTTAATTTGGTACTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK120353 [CAAAAAATAATTCGGGCAGGATCTCCCCGAGGCCCCCGTCCCCTCCTCGTCGACTCCCGTCTCGTCTCCTCGCGAGTTCACCTGCCGTCTGCGCCGATCTCCGATTCTCTATCCGGCGAGCAGGGGGACGCCGCCGTCCTGCTGTTTCCGCCGCATCCTGGTTTGGGAGGTTCAACTGAGCCCCCATGTCGCAGGAGAGGAGCCAGTCGCAGAGCCCCCGGTCGCCGGCGTCGGCGGCTGGGGTGCCGTTCCTGTCGATCTCCGTCACAGATCCTGTGAAGATGGGTACCGGAGTCCAGGCCTACATCTCCTATCGCGTCATCACCAAGACCAACCTGCCTGACTTTGAGGGGCAAGAGAAAATTGTTATCCGGCGCTATAGTGACTTTGAGTGGTTGCATGATCGTCTTGCTGAGAAGTACAAAGGCATTTTTATACCTCCCCTTCCAGAGAAGAATGCTGTTGAAAAATTCCGGTTTAGCAAAGAGTTCATTGAATTACGGCGTCAAGCCCTGGATCTATTTGTCAATAGAATAGCTTCACATCCTGAACTCAAGCAAAGTGGAGATTTGAAGATATTTTTGCAGGCAGATGAAGAGAAAATGGATAGAGAAAGGTCTTATGAAACTGGTATATTCAAGAAGCCTTCTGATTTCTTACAGATGTTTAAGGATGTACAATCAAAAGTCAGTGATGTTGTTCTGGGAAAAGAAAAGCCTGTGGAGGAATCTAGTCCTGAATATGAAAAGCTTAAAAATTACATATTTGAGCTAGAAAACCATTTAGCAGAGGCACAGAAACAAGCATTCCGTCTTGTGAAAAGACACCGAGAACTTGGGCAATCTTTGGC GGACTTTGGTAAGGCTATTAAGCTTTTAGGTGCTTGCGAAGGGGACTCCTTGGAAAAAGTTTTTTCAGAAGTTGGATCAAAGTCAGAGATGTTATCAGTAAAGCTGCAAAGAGAGGCAGACAACCTTCTCTTTAACTTTGAAGAGCCTTTGAAAGATTATGTACGTGCTGTGCAGTCAATAAAAGCAACTATGGTGGATCGAGCCAATGCTTTCAGGCAGCATCATGATTTATTTCAGCAGAAGGAATATAAAGGGGTTAATCTCGAAAAATTGAAGTTCGTGAACCCTGATAAATTTTCTGAACTAGAA GCTGAGGTCCGAGAGTTGACAGCAGACAGTGAG GAGGCTA CAAAGAGGTTTGAGCACATAGTTGCAGTAAT GAATGAAGAGCTTGCACGTTTCCAAGAGCAGAAAACAGCTGATATT GGATTC GCATTCCAT GAATTT GCCAAAGGCCAAGCA AAGTTAGCTAAAGATATTGCTGATGCATGGCGAGGCGTCCTCCCAAAGCTCGAAGCCTGTTCCACTTCATAAATGCTCCGTGTTAGCTTATGTTGTTTGGT TTAGTGGTTGACAATCGGCGAGTTTTAGGCTGTTTTTTCCCCAGGCCA CCTTGACACCGCGTCCTGTATACTTCAACTGACTCTGAAAAAGGGCTAGTTTTTAGATACAATTGACATCATTTCCTGCCTGCTCTGTGTGTATCCTTCTTTTTACGACCAATCAATATTGCTACTGGAATATCTCAAGAATGATGCAGTAAAGGGAAAATAAACTTTAAT ] [+] EMBL AK102304 [ CGTCCCCTCCTCGTCGACTCCCGTCTCGTCTCCTCGCGAGTTCACCTGCCGTCTGCGCCGATCTCCGATTCTCTATCCGGCGAGCAGGGGGACGCCGCCGTCCTGCTGTTTCCGCCGCATCCTGGTTTGGGAGGTTCAACTGAGCCCCCATGTCGCAGGAGAGGAGCCAGTCGCAGAGCCCCCGGTCGCCGGCGTCGGCGGCTGGGGTGCCGTTCCTGTCGATCTCCGTCACAGATCCTGTGAAGATGGGTACCGGAGTCCAGGCCTACATCTCCTATCGCGTCATCACCAAGACCAACCTGCCTGACTTTGAGGGGCAAGAGAAAATTGTTATCCGGCGCTATAGTGACTTTGAGTGGTTGCATGATCGTCTTGCTGAGAAGTACAAAGGCATTTTTATACCTCCCCTTCCAGAGAAGAATGCTGTTGAAAAATTCCGGTTTAGCAAAGAGTTCATTGAATTACGGCGTCAAGCCCTGGATCTATTTGTCAATAGAATAGCTTCACATCCTGAACTCAAGCAAAGTGGAGATTTGAAGATATTTTTGCAGGCAGATGAAGAGAAAATGGATAGAGAAAGGTCTTATGAAACTGGTATATTCAAGAAGCCTTCTGATTTCTTACAGATGTTTAAGGATGTACAATCAAAAGTCAGTGATGTTGTTCTGGGAAAAGAAAAGCCTGTGGAGGAATCTAGTCCTGAATATGAAAAGCTTAAAAATTACATATTTGAGCTAGAAAACCATTTAGCAGAGGCACAGAAACAAGCATTCCGTCTTGTGAAAAGACACCGAGAACTTGGGCAATCTTTGGC GGACTTTGGTAAGGCTATTAAGCTTTTAGGTGCTTGCGAAGGGGACTCCTTGGAAAAAGTTTTTTCAGAAGTTGGATCAAAGTCAGAGATGTTATCAGTAAAGCTGCAAAGAGAGGCAGACAACCTTCTCTTTAACTTTGAAGAGCCTTTGAAAGATTATGTACGTGCTGTGCAGTCAATAAAAGCAACTATGGTGGATCGAGCCAATGCTTTCAGGCAGCATCATGATTTATTTCAGCAGAAGGAATATAAAGGGGTTAATCTCGAAAAATTGAAGTTCGTGAACCCTGATAAATTTTCTGAACTAGAA GCTGAGGTCCGAGAGTTGACAGCAGACAGTGAG GAGGCTA CAAAGAGGTTTGAGCACATAGTTGCAGTAAT GAATGAAGAGCTTGCACGTTTCCAAGAGCAGAAAACAGCTGATATT GGATTC GCATTCCAT GAATTT GCCAAAGGCCAAGCA AAGTTAGCTAAAGATATTGCTGATGCATGGCGAGGCGTCCTCCCAAAGCTCGAAGCCTGTTCCACTTCATAAATGCTCCGTGTTAGCTTATGTTGTTTGGT TTAGTGGTTGACAATCGGCGAGTTTTAGGCTGTTTTTTCCCCAGGCCA CCTTGACACCGCGTCCTGTATACTTCAACTGACTCTGAAAAAGGGCTAGTTTTTAGATACAATTGACATCATTTCCTGCCTGCTCTGTGTGTATCCTTCTTTTTACGACCAATCAATATTGCTACTGGAATATCTCAAGAATGATGCAGTAAAGGGAAAATAAAC ] [+] EMBL CB642184 [ TCGTCGACTCCCGTCTCGTCTCCTCGCGAGTTCACCTGCCGTCTGCGCCGATCTCCGATTCTCTATCCGGCGAGCAGGGGGACGCCGCCGTCCTGCTGTTTCCGCCGCATCCTGGTTTGGGAGGTTCAACTGAGCCCCCATGTCGCAGGAGAGGAGCCAGTCGCAGAGCCCCCGGTCGCCGGCGTCGGCGGCTGGGGTGCCGTTCCTGTCGATCTCCGTCACAGATCCTGTGAAGATGGGTACCGGAGTCCAGGCCTACATCTCCTATCGCGTCATCACCAAGACCAACCTGCCTGACTTTGAGGGGCAAGAGAAAATTGTTATCCGGCGCTATAGTGACTTTGAGTGGTTGCATGATCGTCTTGCTGAGAAGTACAAAGGCATTTTTATACCTCCCCTTCCAGAGAAGAATGCTGTTGAAAAATTCCGGTTTAGCAAAGAGTTCATTGAATTACGGCGTCAAGCCCTGGATCTATTTGTCAATAGAATAGCTTCACATCCTGAACTCAAGCAAAGTGGAGATTTGAAGATATTTTTGCAGGCAGATGAAGAGAAAATGGATAGAGAAAGGTCTTATGAAACTGGTATATTCAAGAAGCCTTCTGATTTCTTACAGATGTTTAAGGATGTACAATCAAAAGTCAGTGATGTTGTTCTGGGAAAAGAAAAGCCTGTGGAGGAATCTAGTCCTGAATATGAAAAGCTTAAAAATTACATATTTGAGCTAGAAAACCATTTAGCAGAGGCACAGAAACAAGCATTCCGTCTTGTGAAAAGACACCGAGAACTTGGGCAATCTTTGGC GGACTTTGGTAA GCTATTAAGCTTTTAGCTGCTTGCGAAAGGGACTCCTTGG ] [+] EMBL CB677747 [ TCCCATTCTCTATCCGGCGAGCAGGGGGACGCCGCCGTCCTGCTGTTTCCGCCGCATCCTGGTTTGGGAGGTTCAACTGAGCCCCCATGTCGCAGGAGAGGAGCCAGTCGCAGAGCCCCCGGTCGCCGGCGTCGGCGGCTGGGGTGCCGTTCCTGTCGATCTCCGTCACAGATCCTGTGAAGATGGGTACCGGAGTCCAGGCCTACATCTCCTATCGCGTCATCACCAAGACCAACCTGCCTGACTTTGAGGGGCAAGAGAAAATTGTTATCCGGCGCTATAGTGACTTTGAGTGGTTGCATGATCGTCTTGCTGAGAAGTACAAAGGCATTTTTATACCTCCCCTTCCAGAGAAGAATGCTGTTGAAAAATTCCGGTTTAGCAAAGAGTTCATTGAATTACGGCGTCAAGCCCTGGATCTATTTGTCAATAGAATAGCTTCACATCCTGAACTCAAGCAAAGTGGAGATTTGAAGATATTTTTGCAGGCAGATGAAGAGAAAATGGATAGAGAAAGGTCTTATGAAACTGGTATATTCAAGAAGCCTTCTGATTTCTTACAGATGTTTAAGGATGTACAATCAAAAGTCAGTGATGTTGTTCTGGGAAAAGAAAAGCCTGTGGAGGAATCTAGTCCTGAATATGAAAAGCTTAAAAATTACATATTTGAGCTAGAAAACCATTTAGCAGAGGCACAGAAACAAGCATTCCGTCTTGTGAAAAGACACCGAGAACTTGGGCCATCTTTGGC GGACTTTGGTAAGGCTATTAAGCT ] [+] EMBL OSR16221A [ AACTGAGCCCCCATGTCGCAGGAGAGGAGCCAGTCGCAGAGCNCCCGGTCGCCGGCGTCGG GGCTGGGGTGCCGTTCCTGTCGNTCTCCGTCACAGATCCTGTNAAGATGGGTACCGGAGTCCAGGCCTACATCTCCTATCGCGTCATCACCAAGACCAACCTGCCTGACTTTNAGGGGCAAGAGAAAATTGTTATCCGGCGCTATAGTNACTTTNAGTGGTTGCATGATCGTCTTGCTNAGAAGTACAAAGGCATTTTTATACCTCCCNTTNCAGAGAAGAATTCTGTTGNAAAATTCCGTTTTAGCAAAGAGTTAATTGAATTACGGCGTNAAGCCnt ] [+] EMBL CA759772 [ AGCCTTCTGATTTCTTACAGATGTTTAAGGATGTACAATCAAAAGTCAGTGATGTTGTTCTGGGAAAAGAAAAGCCTGTGGAGGAATCTAGTCCTGAATATGAAAAGCTTAAAAATTACATATTTGAGCTAGAAAACCATTTAGCAGAGGCACAGAAACAAGCATTCCGTCTTGTGAAAAGACACCGAGAACTTGGGCAATCTTTGGC GGACTTTGGTAAGGCTATTAAGCTTTTA ] [-] EMBL CB642185 [ GAGAACTTGGGCAATCTTTGGCGGGACTTTGGTAAGGCTATTAAGCTTTTAGCTGCTTGCGAAGGGGACTCCTTGGAAAAAGTTTTTTCAGAAGTTGGATCAAAGTCAGAGATGTTATCAGTAAAGCTGCAAAGAGAGGCAGACAACCTTCTCTTTAACTTTGAAGAGCCTTTGAAAGATTATGTACGTGCTGTGCAGTCAATAAAAGCAACTATGGTGGATCGAGCCAATGCTTTCAGGCAGCATCATGATTTATTTCAGCAGAAGGAATATAAAGGGGTTAATCTCGAAAAATTGAAGTTCGTGAACCCTGATAAATTTTCTGAACTAGAA GCTGAGGTCCGAGAGTTGACAGCAGACAGTGAG GAGGCTA CAAAGAGGTTTGAGCACATAGTTGCAGTAAT GAATGAAGAGCTTGCACGTTTCCAAGAGCAGAAAACAGCTGATATT GGATTC GCATTCCAT GAATTT GCCAAAGGCCAAGCA AAGTTAGCTAAAGATATTGCTGATGCATGGCGAGGCGTCCTCCCAAAGCTCGAAGCCTGTTCCACTTCATAAATGCTCCGTGTTAGCTTATGTTGTTTGGT TTAGTGGTTGACAATCGGCGAGTTTTAGGCTGTTTTTTCCCCAGGCCA CCTTGACACCGCGTCCTGTATACTTCAACTGACTCTGAAAAAGGGCTAGTTTTTAGATACAATTGACATCATTTCCTGCCTGCTCTGTGTGTATCCTTCTTTTTACGACCAATCAATATTGCTACTGGAATATCTCAAGAATGATGCAGTAAAGGGAAAATAAACTTTAATTTGGTACTGTAAAAAAAAga ] [-] EMBL CB677748 [ CTTGGAAAAAGTTTTTTCAGAAGTTGGATCAAAGTCAGAGATGTTATCAGTAAAGCTGCAAAGAGAGGCAGACAACCTTCTCTTTAACTTTGAAGAGCCTTTGAAAGATTATGTACGTGCTGTGCAGTCAATAAAAGCAACTATGGTGGATCGAGCCAATGCTTTCAGGCAGCATCATGATTTATTTCAGCAGAAGGAATATAAAGGGGTTAATCTCGAAAAATTGAAGTTCGTGAACCCTGATAAATTTTCTGAACTAGAA GCTGAGGTCCGAGAGTTGACAGCAGACAGTGAG GAGGCTA CAAAGAGGTTTGAGCACATAGTTGCAGTAAT GAATGAAGAGCTTGCACGTTTCCAAGAGCAGAAAACAGCTGATATT GGATTC GCATTCCAT GAATTT GCCAAAGGCCAAGCA AAGTTAGCTAAAGATATTGCTGATGCATGGCGAGGCGTCCTCCCAAAGCTCGAAGCCTGTTCCACTTCATAAATGCTCCGTGTTAGCTTATGTTGTTTGGT TTAGTGGTTGACAATCGGCGAGTTTTAGGCTGTTTTTTCCCCAGGCCA CCTTGACACCGCGTCCTGTATACTTCAACTGACTCTGAAAAAGGGCTAGTTTTTAGATAGAATTGACATCATTTCCTGCCTGCTCTGTGTGTATCCTTCTTTTTACGACCAATCAATATTGCTACTGGAATAGGTCAAGAATGATGCAGTAAAGGGAAAATAAA ] [+] EMBL BQ906569 [ TTCTGAACTAGAACCCTGAGGTCCGAGAGTTGACAGCAGACAGTGAGTGAGGCTACCAAAGAGGTTTGAGCACATAGTTGCAGTAATNGAATGAAGAGCTTGCACGTTTCCAAGAGCAGAAAACAGCTGATATTGGGATTCGGCATTCCATGGAATTTGGCCAAAGGCCAAGCAGAAGTTAGCTAAAGATATTGCTGATGCATGGCGAGGCGTCCTCCCAAAGCTCGAAGCCTGTTCCACTTCATAAATGCTCCGTGTTAGCTTATGTTGTTTGGTNTTAGTGGTTGACAATCGGCGAGTTTTA GCTGTTTTTTCCCCAGGCCACCCTTGACACCGCGTCCTGTATACTTCAACTGACTCTGAAAAAGGGCTAGTTTTTAGATACAATTGGCATCATTTCCTGCCTGCTCTGTGTGTATCCTTCTTTTTACGACCAATCAATATTGCTACTGGAATATCTCAAGAATGATCCAGTAAAGGGAAAATAAACTTCATCNTGGTACTGTAAAAAAAAAA ] [+] EMBL CF328817 [ CCGCGTCCTGTATACTTCAACTGACTCTGAAAAAGGGCTAGTTTTTAGATACAATTGACATCATTTCCTGCCTGCTCTGTGTGTATCCTTCTTTTTACGACCAATCAATATTGCTACTGGAATATCTCAAGAATGATGCAGTAAAGGGAAAATAAACTTTAATTTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||