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Oryza sativa
cluster # 12085 cluster # 12085       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12085#0 length = 1235 sequences # 5  
consensus_12085#1 length = 1171 sequences # 2  
consensus_12085#2 length = 570 sequences # 3  

consensusID : consensus_12085#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1235
fasta sequence
                              [TTCCTCGAGCACTGTTGGCCTACTGGACTCTTGCCTGCATCGATCCTTGAGTTTAATTAACTCAAGGAAGAAGCAATCTTCGCTTCGGTGGATGAAGAGCAGGAAGAACAGCACGACGAGCACAAAAGCAGCAGGCAGCTGCCACACCAGCAGCAGCGGAGGAGGAGGAGGCGGCGGCAACTGCTATAGCAGCAGCAGTAGCAAGATGGAGCGCAAGGATGTGGAGAAGAATCGGCGCCTCCACATGAAGGGTCTCTGCCTCAAGCTCTCCTCCCTCATCCCCGCCGCCGCTCCCCGCCGCCATCACCACCACTACTCCACCTCCTCCTCCTCATCGCCGCCCTCCTCCACCAAGGAGGCTGTGACGCAGCTGGATCACCTGGAGCAGGCGGCGGCGTACATCAAGCAGCTCAAGGGGAGGATCGACGAGCTGAAGAAGAGGAAGCAGCAGGCGGCGGCACTCACCACCAGCACCAGCAATGGCGGCGGCGGCGGGATGCCGGTGGTGGAGGTGCGGTGCCAGGATGGGACGCTGGACGTGGTGGTGGTGAGCGAGGCGATCAGGGAGGAGAGGGAGAGGGCGGTGCGGCTGCACGAGGTGATCGGCGTGCTGGAGGAAGAAGGCGCGGAGGTGGTGAACGCCAGCTTCTCCGTCGTCGGCGACAAGATCTTCTACACTCTCCACTCCCAGGCGCTCTGCTCCAGGATCGGCCTCGACGCCTCCAGGGTCTCCCACAGGCTGCGCAACCTCC-TCCTCCAATATTAATTCACACCACTCTTTCACTCTGCTCAGAATGAGATAATACTCTCTACTCTACTCTACTCTGTACTGTGATGATAAGAAGTATAAAGAGTAGCAGACCAGAGAGCCTCTAGGTAGCTAGGTTAATTAGTGAGAAACAAGAGTTTACACTAAGCTAATGGATGGCATGAGCGGGAGCAAGCTGTTATTACTACTAACTCTTGGCTAACGTTTTTGTATCCCCTAGCTAGCTGCCTGCCCTACGTATATGTCTCCAGTCTATCATGTAGGAGTACTCCAGTAGTATACTGTGTGTGAGTGTTCTCTTTTGTGCCTGAAATTAATCCAGTCCGATGTAAGTACGTACTAGTATTTGGTTTACTGCATGCTCTCTAGCCTCGCATCATTATTTTTGAGAGGCAATGATGTGATAATCCTTAAAATGGGGGCAGTCTCTTCTTAATTCTAAAAAAAAAAAAAAAAAAGGCCACAT]

[+] EMBL AK109432             [TTCCTCGAGCACTGTTGGCCTACTGGACTCTTGCCTGCATCGATCCTTGAGTTTAATTAACTCAAGGAAGAAGCAATCTTCGCTTCGGTGGATGAAGAGCAGGAAGAACAGCACGACGAGCACAAAAGCAGCAGGCAGCTGCCACACCAGCAGCAGCGGAGGAGGAGGAGGCGGCGGCAACTGCTATAGCAGCAGCAGTAGCAAGATGGAGCGCAAGGATGTGGAGAAGAATCGGCGCCTCCACATGAAGGGTCTCTGCCTCAAGCTCTCCTCCCTCATCCCCGCCGCCGCTCCCCGCCGCCATCACCACCACTACTCCACCTCCTCCTCCTCATCGCCGCCCTCCTCCACCAAGGAGGCTGTGACGCAGCTGGATCACCTGGAGCAGGCGGCGGCGTACATCAAGCAGCTCAAGGGGAGGATCGACGAGCTGAAGAAGAGGAAGCAGCAGGCGGCGGCACTCACCACCAGCACCAGCAATGGCGGCGGCGGCGGGATGCCGGTGGTGGAGGTGCGGTGCCAGGATGGGACGCTGGACGTGGTGGTGGTGAGCGAGGCGATCAGGGAGGAGAGGGAGAGGGCGGTGCGGCTGCACGAGGTGATCGGCGTGCTGGAGGAAGAAGGCGCGGAGGTGGTGAACGCCAGCTTCTCCGTCGTCGGCGACAAGATCTTCTACACTCTCCACTCCCAGGCGCTCTGCTCCAGGATCGGCCTCGACGCCTCCAGGGTCTCCCACAGGCTGCGCAACCTCC TCCTCCAATATTAATTCACACCACTCTTTCACTCTGCTCAGAATGAGATAATACTCTCTACTCTACTCTACTCTGTACTGTGATGATAAGAAGTATAAAGAGTAGCAGACCAGAGAGCCTCTAGGTAGCTAGGTTAATTAGTGAGAAACAAGAGTTTACACTAAGCTAATGGATGGCATGAGCGGGAGCAAGCTGTTATTACTACTAACTCTTGGCTAACGTTTTTGTATCCCCTAGCTAGCTGCCTGCCCTACGTATATGTCTCCAGTCTATCATGTAGGAGTACTCCAGTAGTATACTGTGTGTGAGTGTTCTCTTTTGTGCCTGAAATTAATCCAGTCCGATGTAAGTACGTACTAGTATTTGGTTTACTGCATGCTCTCTAGCCTCGCATCATTATTTTTGAGAGGCAATGATGTGATAATCCTTAAAATGGGGGCAGTCTCTTCTTAATTCTAAAAAAAAAAAAAAAAAAGGCCACAT]
[-] EMBL CF295694             [                                                                                                                                                                                                                                                                                                                                                                       CTGTGACGCAGCTGGATCACCTGGAGCAGGCGGCGGCGTACATCAAGCAGCTCAAGGGGAGGATCGGCGAGCTGAAGAAGAGGAAGCAGCAGGCGGCGGCACTCACCACCAGCACCAGCAATGGCGGCGGCGGCGGGATGCCGGTGGTGGAGGTGCGGTGCCAGGATGGGACGCTGGACGTGGTGGTGGTGAGCGAGGCGATCAGGGAGGAGAGGGAGAGGGCGGTGCGGCTGCACGAGGTGATCGGCGTGCTGGAGGAAGAAGGCGCGGAGGTGGTGAACGCCAGCTTCTCCGTCGTCGGCGACAAGATCTTTTACACTCTCCACTCCCAGGCGCTCTGCTCCAGGATCGGCCTCGACGCCTCCAGGGTCTCCCACAGGCTGCGCAACCTCC TCCTCCAATATTAATTCACACCACTCTTTCACTATGCTCAGAATGAGATAATACTATATACTCTACTCTACTCTGTACTGTGATGATAAGAAGTATAAAGAGTAGCAGACCAGAGAGCCTCTAGGTAGCTAGGTTAATTAGTGAGAAACAAGAGTTTACACTAAGCTAATGGATGGCATGAGCGGGAGCAAGCTGTTATTAaaaa                                                                                                                                                                                                                                                                                      ]
[-] EMBL CF297855             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCGCTTTGCTCCAGGATCGGCCTCGACGCCTCCAGGGCCTCCCACAGGCTGCGCAACCTCCTTCCTCCAATATTAATTCACACCACTCTTTCACTCTGCTCAGAATGAGATAATACTCTCTACTCTACTCTACTCTGTACTGTGATGATAAGAAGTATAAAGAGTAGCAGACCAGAGAGCCTCTAGGTAGCTAGGTTAATTAGTGAGAAACAAGAGTTTACACTAAGCTAATGGATGGCATGAGCGGGAGCAAGCTGTTATTACTACTAAaaaa                                                                                                                                                                                                                                                                               ]
[-] EMBL CF294139             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATTCACACCACTCTTTCACTCTGCTCAGAATGAGATAATACTCTCTACTCTACTCTACTCTGTACTGTGATGATAAGAAGTATAAAGAGTAGCAGACCAGAGAGCCTCTAGGTAGCTAGGTTAATTAGTGAGAAACAAGAGTTTACACTAAGCTAATGGATGGCATGAGCGGGAGCAAGCTGTTATTACTACTAAATATTGGCTAACGTTTTTGCATCCCCTAGCTAGCTGCCTGCCCTACGTATATGTCTCCAGTCTATCATGTAGGAGTACTCCAGTAGTATACTGTGTGTGAGTGTTCTCTTTTGTGCCTGAAATTAATCCAGTAAAATGTAAGTACGTACTAaaaa                                                                                                                        ]
[+] EMBL AU174792             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAGAATGAGATAATACTCTCTACTCTACTCTACTCTGTACTGTGATGATAAGAAGTATAAAGAGTAGCAGACCAGAGAGCCTCTAGGTAGCTAGGTTAATTAGTGAGAAACAAGAGTTTACACTAAGCTAATGGATGGCATGAGCGGGAGCAAGCTGTTATTACTACTAACTCTTGGCTAACGTTTTTGTATCCCCTAGCTAGCTGCCTGCCCTACGTATATGTCTCCAGTCTATCATGTAGGAGTACTCCAGTAGTATACTGTGTGTGAGTGTTCTCTTTTGTGCCTGAAATTAATCCAGTCCGATGTAAGTACGTACTAGTATTTGGTTTACTGCATGCTCTCTAGCCTCGCATCATTATTTTTGAGAGGCAATGATGTGATAATCCT                                                       ]


>consensus_12085#0 TTCCTCGAGCACTGTTGGCCTACTGGACTCTTGCCTGCATCGATCCTTGAGTTTAATTAA CTCAAGGAAGAAGCAATCTTCGCTTCGGTGGATGAAGAGCAGGAAGAACAGCACGACGAG CACAAAAGCAGCAGGCAGCTGCCACACCAGCAGCAGCGGAGGAGGAGGAGGCGGCGGCAA CTGCTATAGCAGCAGCAGTAGCAAGATGGAGCGCAAGGATGTGGAGAAGAATCGGCGCCT CCACATGAAGGGTCTCTGCCTCAAGCTCTCCTCCCTCATCCCCGCCGCCGCTCCCCGCCG CCATCACCACCACTACTCCACCTCCTCCTCCTCATCGCCGCCCTCCTCCACCAAGGAGGC TGTGACGCAGCTGGATCACCTGGAGCAGGCGGCGGCGTACATCAAGCAGCTCAAGGGGAG GATCGACGAGCTGAAGAAGAGGAAGCAGCAGGCGGCGGCACTCACCACCAGCACCAGCAA TGGCGGCGGCGGCGGGATGCCGGTGGTGGAGGTGCGGTGCCAGGATGGGACGCTGGACGT GGTGGTGGTGAGCGAGGCGATCAGGGAGGAGAGGGAGAGGGCGGTGCGGCTGCACGAGGT GATCGGCGTGCTGGAGGAAGAAGGCGCGGAGGTGGTGAACGCCAGCTTCTCCGTCGTCGG CGACAAGATCTTCTACACTCTCCACTCCCAGGCGCTCTGCTCCAGGATCGGCCTCGACGC CTCCAGGGTCTCCCACAGGCTGCGCAACCTCCTCCTCCAATATTAATTCACACCACTCTT TCACTCTGCTCAGAATGAGATAATACTCTCTACTCTACTCTACTCTGTACTGTGATGATA AGAAGTATAAAGAGTAGCAGACCAGAGAGCCTCTAGGTAGCTAGGTTAATTAGTGAGAAA CAAGAGTTTACACTAAGCTAATGGATGGCATGAGCGGGAGCAAGCTGTTATTACTACTAA CTCTTGGCTAACGTTTTTGTATCCCCTAGCTAGCTGCCTGCCCTACGTATATGTCTCCAG TCTATCATGTAGGAGTACTCCAGTAGTATACTGTGTGTGAGTGTTCTCTTTTGTGCCTGA AATTAATCCAGTCCGATGTAAGTACGTACTAGTATTTGGTTTACTGCATGCTCTCTAGCC TCGCATCATTATTTTTGAGAGGCAATGATGTGATAATCCTTAAAATGGGGGCAGTCTCTT CTTAATTCTAAAAAAAAAAAAAAAAAAGGCCACAT



consensusID : consensus_12085#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1171
fasta sequence
                              [GAGTAGAAAAATCCAACCCAACCACTCATCATCCATCTGCTACTGCTACTGCTAGCTCCATCCATTTTATTCTAGCTCCATCCATCCTTTAAGAGAAGCTGAGATCAAGAAACGTACTCACTCTTGCCTGCATCGATCCTTGAGTTTAATTAACTCAAGGAAGAAGCAATCTTCGCTTCGGTGGATGAAGAGCAGGAAGAACAGCACGACGAGCACAAAAGCAGCAGGCAGCTGCCACACCAGCAGCAGCGGAGGAGGAGGAGGCGGCGGCAACTGCTATAGCAGCAGCAGTAGCAAGATGGAGCGCAAGGATGTGGAGAAGAATCGGCGCCTCCACATGAAGGGTCTCTGCCTCAAGCTCTCCTCCCTCATCCCCGCCGCCGCTCCCCGCCGCCATCACCACCACTACTCCACCTCCTCCTCCTCATCGCCGCCCTCCTCCACCAAGGAGGCTGTGACGCAGCTGGATCACCTGGAGCAGGCGGCGGCGTACATCAAGCAGCTCAAGGGGGAGGATCGGCGAGCTGAAGAAGAGGAAGCAGCAGGCGGCGGCACTCACAGGATGGGACGCTGGACGTGGTGGTGGTGAGCGAGGCGATCAGGGAGGAGAGGGAGAGGGCGGTGCGGCTGCACGAGGTGATCGGCGTGCTGGAGGAAGAAGGCGCGGAGGTGGTGAACGCCAGCTTCTCCGTCGTCGGCGACAAGATCTTCTACACTCTCCACTCCCAGGCGCTCTGCTCCAGAATCGGCCTCGACGCCTCCAGGGTCTCCCACAGGCTGCGCAACCTCCTCCTCCAATATTAATTCACACCACTCTTTCACTCTGCTCAGAATGAGATAATACTCTCTACTCTACTCTACTCTGTACTGTGATGATAAGAAGTATAAAGAGTAGCAGACCAGAGAGCCTCTAGGTAGCTAGGTTAATTAGTGAGAAACAAGAGTTTACACTAAGCTAATGGATGGCATGAGCGGGAGCAAGCTGTTATTACTACTAACTCTTGGCTAACGTTTTTGTATCCCCTAGCTAGATGCCTGCCCTACGTATATGTCTCCAGTCTATCATGTAGGAGTACTCCAGTAGTATACTGTGTGTGAGTGTTCTCTTTTGTGCCTGAAATTAATCCAGTCCGATGTAAGTACGTACTAGTATTTGGTTTACTGCATGCTC]

[+] EMBL CF295693             [GAGTAGAAAAATCCAACCCAACCACTCATCATCCATCTGCTACTGCTACTGCTAGCTCCATCCATTTTATTCTAGCTCCATCCATCCTTTAAGAGAAGCTGAGATCAAGAAACGTACTCACTCTTGCCTGCATCGATCCTTGAGTTTAATTAACTCAAGGAAGAAGCAATCTTCGCTTCGGTGGATGAAGAGCAGGAAGAACAGCACGACGAGCACAAAAGCAGCAGGCAGCTGCCACACCAGCAGCAGCGGAGGAGGAGGAGGCGGCGGCAACTGCTATAGCAGCAGCAGTAGCAAGATGGAGCGCAAGGATGTGGAGAAGAATCGGCGCCTCCACATGAAGGGTCTCTGCCTCAAGCTCTCCTCCCTCATCCCCGCCGCCGCTCCCCGCCGCCATCACCACCACTACTCCACCTCCTCCTCCTCATCGCCGCCCTCCTCCACCAAGGAGGCTGTGACGCAGCTGGATCACCTGGAGCAGGCGGCGGCGTACATCAAGCAGCTCAAGGGGGAGGATCGGCGAGCTGAAGAAGAGGAAGCAGCAGGCGGCGGCACTCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK070332             [                      CACTCATCATCCATCTGCTACTGCTACTGCTAGCTCCATCCATTTTATTCTAGCTCCATCCATCCTTTAAGAGAAGCTGAGATCAAGAAACGTACTCACTCTTGCCTGCATCGATCCTTGAGTTTAATTAACTCAAGGAAGAAGCAATCTTCGCTTCGGTGGATGAAGAGCAGGAAGAACAGCACGACGAGCACAAAAGCAGCAGGCAGCTGCCACACCAGCAGCAGCGGAGGAGGAGGAGGCGGCGGCAACTGCTATAGCAGCAGCAGTAGCAAGATGGAGCGCAAGGATGTGGAGAAGAATCGGCGCCTCCACATGAAGGGTCTCTGCCTCAAGCTCTCCTCCCTCATCCCCGCCGCCGCTCCCCGCCGCCATCACCACCACTACTCCACCTCCTCCTCCTCATCGCCGCCCTCCTCCACCAAGGAGGCTGTGACGCAGCTGGATCACCTGGAGCAGGCGGCGGCGTACATCAAGCAGCTCAA GGGGAGGATCGACGAGCTGAAGAAGAGGAAGCAGCAGGCGGCGGCGGTGCCAGGATGGGACGCTGGACGTGGTGGTGGTGAGCGAGGCGATCAGGGAGGAGAGGGAGAGGGCGGTGCGGCTGCACGAGGTGATCGGCGTGCTGGAGGAAGAAGGCGCGGAGGTGGTGAACGCCAGCTTCTCCGTCGTCGGCGACAAGATCTTCTACACTCTCCACTCCCAGGCGCTCTGCTCCAGAATCGGCCTCGACGCCTCCAGGGTCTCCCACAGGCTGCGCAACCTCCTCCTCCAATATTAATTCACACCACTCTTTCACTCTGCTCAGAATGAGATAATACTCTCTACTCTACTCTACTCTGTACTGTGATGATAAGAAGTATAAAGAGTAGCAGACCAGAGAGCCTCTAGGTAGCTAGGTTAATTAGTGAGAAACAAGAGTTTACACTAAGCTAATGGATGGCATGAGCGGGAGCAAGCTGTTATTACTACTAACTCTTGGCTAACGTTTTTGTATCCCCTAGCTAGATGCCTGCCCTACGTATATGTCTCCAGTCTATCATGTAGGAGTACTCCAGTAGTATACTGTGTGTGAGTGTTCTCTTTTGTGCCTGAAATTAATCCAGTCCGATGTAAGTACGTACTAGTATTTGGTTTACTGCATGCTC]


>consensus_12085#1 GAGTAGAAAAATCCAACCCAACCACTCATCATCCATCTGCTACTGCTACTGCTAGCTCCA TCCATTTTATTCTAGCTCCATCCATCCTTTAAGAGAAGCTGAGATCAAGAAACGTACTCA CTCTTGCCTGCATCGATCCTTGAGTTTAATTAACTCAAGGAAGAAGCAATCTTCGCTTCG GTGGATGAAGAGCAGGAAGAACAGCACGACGAGCACAAAAGCAGCAGGCAGCTGCCACAC CAGCAGCAGCGGAGGAGGAGGAGGCGGCGGCAACTGCTATAGCAGCAGCAGTAGCAAGAT GGAGCGCAAGGATGTGGAGAAGAATCGGCGCCTCCACATGAAGGGTCTCTGCCTCAAGCT CTCCTCCCTCATCCCCGCCGCCGCTCCCCGCCGCCATCACCACCACTACTCCACCTCCTC CTCCTCATCGCCGCCCTCCTCCACCAAGGAGGCTGTGACGCAGCTGGATCACCTGGAGCA GGCGGCGGCGTACATCAAGCAGCTCAAGGGGGAGGATCGGCGAGCTGAAGAAGAGGAAGC AGCAGGCGGCGGCACTCACAGGATGGGACGCTGGACGTGGTGGTGGTGAGCGAGGCGATC AGGGAGGAGAGGGAGAGGGCGGTGCGGCTGCACGAGGTGATCGGCGTGCTGGAGGAAGAA GGCGCGGAGGTGGTGAACGCCAGCTTCTCCGTCGTCGGCGACAAGATCTTCTACACTCTC CACTCCCAGGCGCTCTGCTCCAGAATCGGCCTCGACGCCTCCAGGGTCTCCCACAGGCTG CGCAACCTCCTCCTCCAATATTAATTCACACCACTCTTTCACTCTGCTCAGAATGAGATA ATACTCTCTACTCTACTCTACTCTGTACTGTGATGATAAGAAGTATAAAGAGTAGCAGAC CAGAGAGCCTCTAGGTAGCTAGGTTAATTAGTGAGAAACAAGAGTTTACACTAAGCTAAT GGATGGCATGAGCGGGAGCAAGCTGTTATTACTACTAACTCTTGGCTAACGTTTTTGTAT CCCCTAGCTAGATGCCTGCCCTACGTATATGTCTCCAGTCTATCATGTAGGAGTACTCCA GTAGTATACTGTGTGTGAGTGTTCTCTTTTGTGCCTGAAATTAATCCAGTCCGATGTAAG TACGTACTAGTATTTGGTTTACTGCATGCTC



consensusID : consensus_12085#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 570
fasta sequence
                              [CCAACCACTCATCATCCATCTGCTACTGCTACTGCTAGCTCCATCCATTTTATTCTAGCTCCATCCATCCTTTAAGAGAAGCTGAGATCAAGAAACGTACTCACTCTTGCCTGCATCGATCCTTGAGTTTAATTAACTCAAGGAAGAAGCAATCTTCGCTTCGGTGGATGAAGAGCAGGAAGAACAGCACGACGAGCACAAAAGCAGCAGGCAGCTGCCACACCAGCAGCAGCGGAGGAGGAGGAGGCGGCGGCAACTGCTATAGCAGCAGCAGTAGCAAGATGGAGCGCAAGGATGTGGAGAAGAATCGGCGCCTCCACATGAAGGGTCTCTGCCTCAAGCTCTCCTCCCTCATCCCCGCCGCCGCTCCCCGCCGCCATCACCACCACTACTCCACCTCCTCCTCCTCATCGCCGCCCTCCTCCACCAAGGAGGCTGTGACGCAGCTGGATCACCTGGAGCAGGCGGCGGCGTACATCAAGCAGCTCAAGGGGAGGATCGACGAGCTGAAGAAGAGGAAGCAGCAGGCGGCGGCACTCACCACCAGCACCAGCAATGGCGGCGGCGGCG]

[+] EMBL CF294138             [CCAACCACTCATCATCCATCTGCTACTGCTACTGCTAGCTCCATCCATTTTATTCTAGCTCCATCCATCCTTTAAGAGAAGCTGAGATCAAGAAACGTACTCACTCTTGCCTGCATCGATCCTTGAGTTTAATTAACTCAAGGAAGAAGCAATCTTCGCTTCGGTGGATGAAGAGCAGGAAGAACAGCACGACGAGCACAAAAGCAGCAGGCAGCTGCCACACCAGCAGCAGCGGAGGAGGAGGAGGCGGCGGCAACTGCTATAGCAGCAGCAGTAGCAAGATGGAGCGCAAGGATGTGGAGAAGAATCGGCGCCTCCACATGAAGGGTCTCTGCCTCAAGCTCTCCTCCCTCATCCCCGCCGCCGCTCCCCGCCGCCATCACCACCACTACTCCACCTCCTCCTCCTCATCGCCGCCCTCCTCCACCAAGGAGGCTGTGACGCAGCTGGATCACCTGGAGCAGGCGGCGGCGTACATCAAGCAGCTCAAGGGGAGGATCGACGAGCTGAAGAAGAGGAAGCAGCAGGCGGCGGCACTCACCACCAGCACCAGCAATGGCGGCG      ]
[+] EMBL CF297854             [     CACTCATCATCCATCTGCTACTGCTACTGCTAGCTCCATCCATTTTATTCTAGCTCCATCCATCCTTTAAGAGAAGCTGAGATCAAGAAACGTACTCACTCTTGCCTGCATCGATCCTTGAGTTTAATTAACTCAAGGAAGAAGCAATCTTCGCTTCGGTGGATGAAGAGCAGGAAGAACAGCACGACGAGCACAAAAGCAGCAGGCAGCTGCCACACCAGCAGCAGCGGAGGAGGAGGAGGCGGCGGCAACTGCTATAGCAGCAGCAGTAGCAAGATGGAGCGCAAGGATGTGGAGAAGAATCGGCGCCTCCACATGAAGGGTCTCTGCCTCAAGCTCTCCTCCCTCATCCCCGCCGCCGCTCCCCGCCGCCATCACCACCACTACTCCACCTCCTCCTCCTCATCGCCGCCCTCCTCCACCAAGGAGGCTGTGACGCAGCTGGATCACCTGGAGCAGGCGGCGGCGTACATCAAGCAGCTCAAGGGGAGGATCGACGAGCTGAAGAAGAGGAAGCAGCAGGCGGCGGCACTCACCACCAGCACCAGCAATGGCGGCGGCGGCG]
[+] EMBL CF296121             [                             TACTGCTAGCTCCATCCATTTTATTCTAGCTCCATCCATCCTTTAAGAGAAGCTGAGATCAAGAAACGTACTCACTCTTGCCTGCATCGATCCTTGAGTTTAATTAACTCAAGGAAGAAGCAATCTTCGCTTCGGTGGATGAATAGCAGGAAGAACAGCACGACGAGCACAAAAGCAGCAGGCAGCTGCCACACCAGCAGCAGCGGAGGAGGAGGAGGCGGCGGCAACTGCTATAGCAGCAGCAGTAGCAAGATGGAGCGCAAGGATGTGGAGAAGAATCGGCGCCTCCACATGAAGGGTCTCTGCCTCAAGCTCTCCTCCCTCATCCCCGCCGCCGCTCCCCGCCGCCATCACCACCAC                                                                                                                                                                                     ]


>consensus_12085#2 CCAACCACTCATCATCCATCTGCTACTGCTACTGCTAGCTCCATCCATTTTATTCTAGCT CCATCCATCCTTTAAGAGAAGCTGAGATCAAGAAACGTACTCACTCTTGCCTGCATCGAT CCTTGAGTTTAATTAACTCAAGGAAGAAGCAATCTTCGCTTCGGTGGATGAAGAGCAGGA AGAACAGCACGACGAGCACAAAAGCAGCAGGCAGCTGCCACACCAGCAGCAGCGGAGGAG GAGGAGGCGGCGGCAACTGCTATAGCAGCAGCAGTAGCAAGATGGAGCGCAAGGATGTGG AGAAGAATCGGCGCCTCCACATGAAGGGTCTCTGCCTCAAGCTCTCCTCCCTCATCCCCG CCGCCGCTCCCCGCCGCCATCACCACCACTACTCCACCTCCTCCTCCTCATCGCCGCCCT CCTCCACCAAGGAGGCTGTGACGCAGCTGGATCACCTGGAGCAGGCGGCGGCGTACATCA AGCAGCTCAAGGGGAGGATCGACGAGCTGAAGAAGAGGAAGCAGCAGGCGGCGGCACTCA CCACCAGCACCAGCAATGGCGGCGGCGGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12085#1      GAGTAGAAAAATCCAACCCAACCACTCATCATCCATCTGCTACTGCTACTGCTAGCTCCA 60
consensus_12085#2      -----------------CCAACCACTCATCATCCATCTGCTACTGCTACTGCTAGCTCCA 43
consensus_12085#0      ------------------------------------------------------------
                                                                                   

consensus_12085#1      TCCATTTTATTCTAGCTCCATCCATCCTTTAAGAGAAGCTGAGATCAAGAAACGTACTC- 119
consensus_12085#2      TCCATTTTATTCTAGCTCCATCCATCCTTTAAGAGAAGCTGAGATCAAGAAACGTACTC- 102
consensus_12085#0      ----------------------------------TTCCTCGAGCACTGTTGGCCTACTGG 26
                                                               ***  *      * ****  

consensus_12085#1      ACTCTTGCCTGCATCGATCCTTGAGTTTAATTAACTCAAGGAAGAAGCAATCTTCGCTTC 179
consensus_12085#2      ACTCTTGCCTGCATCGATCCTTGAGTTTAATTAACTCAAGGAAGAAGCAATCTTCGCTTC 162
consensus_12085#0      ACTCTTGCCTGCATCGATCCTTGAGTTTAATTAACTCAAGGAAGAAGCAATCTTCGCTTC 86
                       ************************************************************

consensus_12085#1      GGTGGATGAAGAGCAGGAAGAACAGCACGACGAGCACAAAAGCAGCAGGCAGCTGCCACA 239
consensus_12085#2      GGTGGATGAAGAGCAGGAAGAACAGCACGACGAGCACAAAAGCAGCAGGCAGCTGCCACA 222
consensus_12085#0      GGTGGATGAAGAGCAGGAAGAACAGCACGACGAGCACAAAAGCAGCAGGCAGCTGCCACA 146
                       ************************************************************

consensus_12085#1      CCAGCAGCAGCGGAGGAGGAGGAGGCGGCGGCAACTGCTATAGCAGCAGCAGTAGCAAGA 299
consensus_12085#2      CCAGCAGCAGCGGAGGAGGAGGAGGCGGCGGCAACTGCTATAGCAGCAGCAGTAGCAAGA 282
consensus_12085#0      CCAGCAGCAGCGGAGGAGGAGGAGGCGGCGGCAACTGCTATAGCAGCAGCAGTAGCAAGA 206
                       ************************************************************

consensus_12085#1      TGGAGCGCAAGGATGTGGAGAAGAATCGGCGCCTCCACATGAAGGGTCTCTGCCTCAAGC 359
consensus_12085#2      TGGAGCGCAAGGATGTGGAGAAGAATCGGCGCCTCCACATGAAGGGTCTCTGCCTCAAGC 342
consensus_12085#0      TGGAGCGCAAGGATGTGGAGAAGAATCGGCGCCTCCACATGAAGGGTCTCTGCCTCAAGC 266
                       ************************************************************

consensus_12085#1      TCTCCTCCCTCATCCCCGCCGCCGCTCCCCGCCGCCATCACCACCACTACTCCACCTCCT 419
consensus_12085#2      TCTCCTCCCTCATCCCCGCCGCCGCTCCCCGCCGCCATCACCACCACTACTCCACCTCCT 402
consensus_12085#0      TCTCCTCCCTCATCCCCGCCGCCGCTCCCCGCCGCCATCACCACCACTACTCCACCTCCT 326
                       ************************************************************

consensus_12085#1      CCTCCTCATCGCCGCCCTCCTCCACCAAGGAGGCTGTGACGCAGCTGGATCACCTGGAGC 479
consensus_12085#2      CCTCCTCATCGCCGCCCTCCTCCACCAAGGAGGCTGTGACGCAGCTGGATCACCTGGAGC 462
consensus_12085#0      CCTCCTCATCGCCGCCCTCCTCCACCAAGGAGGCTGTGACGCAGCTGGATCACCTGGAGC 386
                       ************************************************************

consensus_12085#1      AGGCGGCGGCGTACATCAAGCAGCTCAAGGGGGAGGATCGGCGAGCTGAAGAAGAGGAAG 539
consensus_12085#2      AGGCGGCGGCGTACATCAAGCAGCTCAAGGGG-AGGATCGACGAGCTGAAGAAGAGGAAG 521
consensus_12085#0      AGGCGGCGGCGTACATCAAGCAGCTCAAGGGG-AGGATCGACGAGCTGAAGAAGAGGAAG 445
                       ******************************** ******* *******************

consensus_12085#1      CAGCAGGCGGCGGCACTCACAGGATGGGACGCTGGACGTGGTGGTGGTG----------- 588
consensus_12085#2      CAGCAGGCGGCGGCACTCACCACCAGCACCAGCAATGGCGGCGGCGGCG----------- 570
consensus_12085#0      CAGCAGGCGGCGGCACTCACCACCAGCACCAGCAATGGCGGCGGCGGCGGGATGCCGGTG 505
                       ********************     *   *       * ** ** ** *           

consensus_12085#1      ---------------------------------------------AGCGAGGCGATCAGG 603
consensus_12085#2      ------------------------------------------------------------
consensus_12085#0      GTGGAGGTGCGGTGCCAGGATGGGACGCTGGACGTGGTGGTGGTGAGCGAGGCGATCAGG 565
                                                                                   

consensus_12085#1      GAGGAGAGGGAGAGGGCGGTGCGGCTGCACGAGGTGATCGGCGTGCTGGAGGAAGAAGGC 663
consensus_12085#2      ------------------------------------------------------------
consensus_12085#0      GAGGAGAGGGAGAGGGCGGTGCGGCTGCACGAGGTGATCGGCGTGCTGGAGGAAGAAGGC 625
                                                                                   

consensus_12085#1      GCGGAGGTGGTGAACGCCAGCTTCTCCGTCGTCGGCGACAAGATCTTCTACACTCTCCAC 723
consensus_12085#2      ------------------------------------------------------------
consensus_12085#0      GCGGAGGTGGTGAACGCCAGCTTCTCCGTCGTCGGCGACAAGATCTTCTACACTCTCCAC 685
                                                                                   

consensus_12085#1      TCCCAGGCGCTCTGCTCCAGAATCGGCCTCGACGCCTCCAGGGTCTCCCACAGGCTGCGC 783
consensus_12085#2      ------------------------------------------------------------
consensus_12085#0      TCCCAGGCGCTCTGCTCCAGGATCGGCCTCGACGCCTCCAGGGTCTCCCACAGGCTGCGC 745
                                                                                   

consensus_12085#1      AACCTCCTCCTCCAATATTAATTCACACCACTCTTTCACTCTGCTCAGAATGAGATAATA 843
consensus_12085#2      ------------------------------------------------------------
consensus_12085#0      AACCTCCTCCTCCAATATTAATTCACACCACTCTTTCACTCTGCTCAGAATGAGATAATA 805
                                                                                   

consensus_12085#1      CTCTCTACTCTACTCTACTCTGTACTGTGATGATAAGAAGTATAAAGAGTAGCAGACCAG 903
consensus_12085#2      ------------------------------------------------------------
consensus_12085#0      CTCTCTACTCTACTCTACTCTGTACTGTGATGATAAGAAGTATAAAGAGTAGCAGACCAG 865
                                                                                   

consensus_12085#1      AGAGCCTCTAGGTAGCTAGGTTAATTAGTGAGAAACAAGAGTTTACACTAAGCTAATGGA 963
consensus_12085#2      ------------------------------------------------------------
consensus_12085#0      AGAGCCTCTAGGTAGCTAGGTTAATTAGTGAGAAACAAGAGTTTACACTAAGCTAATGGA 925
                                                                                   

consensus_12085#1      TGGCATGAGCGGGAGCAAGCTGTTATTACTACTAACTCTTGGCTAACGTTTTTGTATCCC 1023
consensus_12085#2      ------------------------------------------------------------
consensus_12085#0      TGGCATGAGCGGGAGCAAGCTGTTATTACTACTAACTCTTGGCTAACGTTTTTGTATCCC 985
                                                                                   

consensus_12085#1      CTAGCTAGATGCCTGCCCTACGTATATGTCTCCAGTCTATCATGTAGGAGTACTCCAGTA 1083
consensus_12085#2      ------------------------------------------------------------
consensus_12085#0      CTAGCTAGCTGCCTGCCCTACGTATATGTCTCCAGTCTATCATGTAGGAGTACTCCAGTA 1045
                                                                                   

consensus_12085#1      GTATACTGTGTGTGAGTGTTCTCTTTTGTGCCTGAAATTAATCCAGTCCGATGTAAGTAC 1143
consensus_12085#2      ------------------------------------------------------------
consensus_12085#0      GTATACTGTGTGTGAGTGTTCTCTTTTGTGCCTGAAATTAATCCAGTCCGATGTAAGTAC 1105
                                                                                   

consensus_12085#1      GTACTAGTATTTGGTTTACTGCATGCTC-------------------------------- 1171
consensus_12085#2      ------------------------------------------------------------
consensus_12085#0      GTACTAGTATTTGGTTTACTGCATGCTCTCTAGCCTCGCATCATTATTTTTGAGAGGCAA 1165
                                                                                   

consensus_12085#1      ------------------------------------------------------------
consensus_12085#2      ------------------------------------------------------------
consensus_12085#0      TGATGTGATAATCCTTAAAATGGGGGCAGTCTCTTCTTAATTCTAAAAAAAAAAAAAAAA 1225
                                                                                   

consensus_12085#1      ----------
consensus_12085#2      ----------
consensus_12085#0      AAGGCCACAT 1235
                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)