cluster # 12091

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12091 cluster # 12091 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12091#0 length = 943 sequences # 9

consensus_12091#1 length = 199 sequences # 1

consensusID : consensus_12091#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 943
fasta sequence

                              [TCGCACAGAGCAAAACACGACGAGAACGAACGCAACGCACACTTACACATACACACACGCTGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTGATGGCGTCGATGAGAACTGCGGCGGCGGCGGCGATGCTGGCCTGCATCGCCGTCGTTCTGGCGAGCACGGCGGCGGACGGCGCGCTGCTCCCGTGGTTCGGCGGCGGCGGCGCGCGGGACGAGGCGGTGCCGGAGTTGGGGCTCCTGGCGGCGGCCGACCCGTTCCGGATCCT-GGAGCACGTGCCGTTCGGGTTCGACCGCGACGACGTGGCGATGCTGTCGATGGCGCGGGTGGACTGGCGGGAGACCGGCGACGCGCACGAGGTCGTGGTGGACGTGCCGGGGATGAGGAAGGAGGACCTGCGGGTGGAGGTGGAGGACAACCGGGTGCTGAGGATCAGCGGCGAGCGGCGGCGGGAGGAGACGACGGAGCAGAAGGGCGGCGGCGACCACTGGCACCGGGAGGAGCGGTCCTACGGCAGGTTCTGGCGGCAGCTCCGCCT-CCCCGACAACGCCGACCTCGACTCCATCGCCGCCTCCCTCGACAACGGCGTGCTCACCGTCCGGTTCCGGAAGCTGGCGCCCGACCAGATCAAGGGCCCGCGCGTCGTCGGCATCGCCTCCGCCGGCGGTGACGACGGTGGCAAGAAGAGCATCGGCGGCGCCGGCGAGGGGCAGAACCAGCAGGCCAAGAAGGTGGAGCTNTGAGCTGTGAAATTTGTCGAGTGGAAACTATGGTTGCGAGTGGTGTGTTGTCACTTGTTTGCAGAGCACATGTTCCGGTACATAAAATGCGTGTGGAGAGAAAATGTGAAGATGTATCGCACTTTCATCGTTGTGCAGATCTTAACTGAGGAATAAGAAGCTTCAGTTCCCCATCTTAA---AAAAAAAAAAAAAAAAAAA]

[+] EMBL AK063700             [TCGCACAGAGCAAAACACGACGAGAACGAACGCAACGCACACTTACACATACACACACGCTGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTGATGGCGTCGATGAGAACTGCGGCGGCGGCGGCGATGCTGGCCTGCATCGCCGTCGTTCTGGCGAGCACGGCGGCGGACGGCGCGCTGCTCCCGTGGTTCGGCGGCGGCGGCGCGCGGGACGAGGCGGTGCCGGAGTTGGGGCTCCTGGCGGCGGCCGACCCGTTCCGGATCCT GGAGCACGTGCCGTTCGGGTTCGACCGCGACGACGTGGCGATGCTGTCGATGGCGCGGGTGGACTGGCGGGAGACCGGCGACGCGCACGAGGTCGTGGTGGACGTGCCGGGGATGAGGAAGGAGGACCTGCGGGTGGAGGTGGAGGACAACCGGGTGCTGAGGATCAGCGGCGAGCGGCGGCGGGAGGAGACGACGGAGCAGAAGGGCGGCGGCGACCACTGGCACCGGGAGGAGCGGTCCTACGGCAGGTTCTGGCGGCAGCTCCGCCT CCCCGACAACGCCGACCTCGACTCCATCGCCGCCTCCCTCGACAACGGCGTGCTCACCGTCCGGTTCCGGAAGCTGGCGCCCGACCAGATCAAGGGCCCGCGCGTCGTCGGCATCGCCTCCGCCGGCGGTGACGACGGTGGCAAGAAGAGCATCGGCGGCGCCGGCGAGGGGCAGAACCAGCAGGCCAAGAAGGTGGAGCTCTGAGCTGTGAAATTTGTCGAGTGGAAACTATGGTTGCGAGTGGTGTGTTGTCACTTGTTTGCAGAGCACATGTTCCGGTACATAAAATGCGTGTGGAGAGAAAATGTGAAGATGTATCGCACTTTCATCGTTGTGCAGATCTTAACTGAGGAATAAGAAGCTTCAGT                                  ]
[+] EMBL C97656               [    ACAGAGCAAAACACGACGAGAACGAACGCAACGCACACTTACACATACACACACGCTGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTGATGGCGTCGATGAGAACTGCGGCGGCGGCGGCGATGCTGGCCTGCATCG CGTCGTTCTGGCGAGCACGGCGNCGGACGGCGCGCTGCTCCCGTGGTTCGGCGGCGGCGGCGCGCGNGACGAGGCGGTGNCGTAGTTGGGGCTCCTGGCGGCGGCCGACCCGTTCCGGATCCT GGAGCACGTGNCGTTCGGGTTCGACCGCGACGACGTGGCGATGNTGTCGATGGCGNGGGTGGACTGGCGTGAGACCGGCGACGNGTACGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL C28677               [                          CGAACGCAACGCACACTTACACATACACACACGCTGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTAATGGCGTCGATGAGAACTGCGGCGNNGGCGGCGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL C29179               [                             ACGCAACGCACACTTACACATACACACACGCTGCTAGTGCTAGCTAAGNTACCNACGAGAGAACGTCCGTAATGGCGTCGATGAGAACTGCGGCGGCGGCGGCGATGCTGGCCTGCNTCGCCGTCTTTTTGGCGAGCACGGCGGCGGACGGCGCGCTGCTCCCTTGGTTCGNCGGCGGCGGCGCGCGGAACGAGGCGGTGCCGAATTTGGGGCTCCTGGCGGCGGCCNACCCGTTCCGNTTCCT GGAGCACGTNCCGTTCGGTTTCAACCGNAACGACGTGGCGATGCTGTCna                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSC296               [                                                                                              TCCNTGATGGCGTCGATGAGAACTGCGGCGNCGGCGGCGATGCTGGCCTGCATCGCCGTCGTTCTGGCGAGCACGGCGGCGGACGNCGCGCTGCTCCCGTGGTTCGGCGGCGGCGGCGCNNGNGACGAGGCGGTGCCGGAGTTGGGGCTCCTGGCNGTGNCCGACCCNTTCCGGATCCTNAGAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU181962             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCGGGAGGAGCGGTCCTACGGCAGGTTCTGGCGGCAGCTCCGCCT CCCCGACAACGCCGACCTCGACTCCATCGCCGCCTCCCTCGACAACGGCGTGCTCACCGTCCGGTTCCGGAAGCTGGCGCCCGACCAGATCAAGGGCCCGCGCGTCGTCGGCATCGCCTCCGCCGGCGGTGACGACGGTGGCAANAAGAGCATCGGCGGCGCCGGCGAGGGGCAGAACCAGCAGGCCAAGAAGGTGGAGCTNTGAGCTGTGAAATTTGTCGAGTGGAAACTATGGTTGCGAGTGGTGTGTTGTCACTTGTTTGCAGAGCACATGTTCCGGTACATAAAATGCGTGTGGAGAGAAAATGTGAAGATGTATCGCACTTTCATCGTTGTGCAGATNTTAACTGAGGAATAAGAAGCTTCAGTTCCCCATNTTAA   AAAAAAAAAAAA       ]
[+] EMBL AU222543             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CTGGCGGCAGTTCCGCCTCCCCCGACAACGNCGACCTGGACTCCATCGCCGCCTCCCTCGACAACGGCGTGCTCACCGTCCGGTTCCGGAAGCTGGCGCCCGACCAGATCAAGGGCCCGCGCGTCGTCGGCATCGCCTCCGCCGGCGGTGACGACGGTGGCAANAAGAGCATCGGCGGCGCCGGCGAGGGGCAGAACCAGCAGGCCAAGAAGGTGGAGCTNTGAGCTGTGAAATTTGTCGAGTGGAAACTATGGTTGCGAGTGGTGTGTTGTCACTTGTTTGCAGAGCACATGTTCCGGTACATAAAATGCGTGTGGAGAGAAAATGTGAAGATGTATCGCNCTTTCATCGTTGTGCAGATNTTAACTGAGGAATAAGAAGCTTCAGTTCCCCATCTTAATCGAGATAAAAAAAAAAAAAAA]
[+] EMBL AU172415             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAACGCCGACCTTGACTCCATCGCCGCCTCCCTCGACAACGGCGTGCTCACCGTCCGGTTCCGGAAGCTGGCGNCCGNCCAGATCAAGGGCCCGCGCGTCGTCGGCATCGCCTCCGCCGGCGGTGACGACGGTGGCAAGAAGAGCATCGGCGGCGCCGGCGAGGGGCAGAACCAGCAGGCCAAGAAGGTGGAGCTNTGAGCTGTGAAATTTGTCGAGTGGAAACTATGGTTGCGAGTGGTGTGTTGTCACTTGTTTGCAGAGCACATGTTCCGGTACATAAAATGCGTGTGGAGAGAAAATGTGAAGATGTATCGCACTTTCATCGTTGTGCAGATCTTAACTGAGGAATAAGAAGCTTCAGTTCCCCATCTTAA   AAAAA              ]
[+] EMBL AU101315             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCGGCGAGGGGCAGAACCAGCAGGCCAAGAAGGTGGAGCTCTGAGCTGTGAAATTTGTCGAGTGGAAACTATGGTTNCGAGTGGTGTGTTGTCACTTGTTTGCAGAGCACATGTTCCGGTACATAAAATGCGTGTGGAGAGAAAATGTGAAGATGTATCGCACTTTCATCGTTGTGCAGATCTTAACTGAGGAATAAGAAGCTTCAGTTCCCCATCTTAC   AAAAAAAAA          ]




>consensus_12091#0
TCGCACAGAGCAAAACACGACGAGAACGAACGCAACGCACACTTACACATACACACACGC
TGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTGATGGCGTCGATGAGAACTGC
GGCGGCGGCGGCGATGCTGGCCTGCATCGCCGTCGTTCTGGCGAGCACGGCGGCGGACGG
CGCGCTGCTCCCGTGGTTCGGCGGCGGCGGCGCGCGGGACGAGGCGGTGCCGGAGTTGGG
GCTCCTGGCGGCGGCCGACCCGTTCCGGATCCTGGAGCACGTGCCGTTCGGGTTCGACCG
CGACGACGTGGCGATGCTGTCGATGGCGCGGGTGGACTGGCGGGAGACCGGCGACGCGCA
CGAGGTCGTGGTGGACGTGCCGGGGATGAGGAAGGAGGACCTGCGGGTGGAGGTGGAGGA
CAACCGGGTGCTGAGGATCAGCGGCGAGCGGCGGCGGGAGGAGACGACGGAGCAGAAGGG
CGGCGGCGACCACTGGCACCGGGAGGAGCGGTCCTACGGCAGGTTCTGGCGGCAGCTCCG
CCTCCCCGACAACGCCGACCTCGACTCCATCGCCGCCTCCCTCGACAACGGCGTGCTCAC
CGTCCGGTTCCGGAAGCTGGCGCCCGACCAGATCAAGGGCCCGCGCGTCGTCGGCATCGC
CTCCGCCGGCGGTGACGACGGTGGCAAGAAGAGCATCGGCGGCGCCGGCGAGGGGCAGAA
CCAGCAGGCCAAGAAGGTGGAGCTNTGAGCTGTGAAATTTGTCGAGTGGAAACTATGGTT
GCGAGTGGTGTGTTGTCACTTGTTTGCAGAGCACATGTTCCGGTACATAAAATGCGTGTG
GAGAGAAAATGTGAAGATGTATCGCACTTTCATCGTTGTGCAGATCTTAACTGAGGAATA
AGAAGCTTCAGTTCCCCATCTTAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_12091#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [ACAGAGCAAAANACGACGAGAACGAACGCAACGACACTTACACATACACACACGCTGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTGATGGCGTCGATGAGAACTNCGGCGGCNGCGGCGAATNCTGGCCTGCATCGGNTTTTCTTGGTCGATGCACGGCGTCGGTACGGCNGCTTGCTCCCGTGGTTCGG]

[+] EMBL AU069633             [ACAGAGCAAAANACGACGAGAACGAACGCAACGACACTTACACATACACACACGCTGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTGATGGCGTCGATGAGAACTNCGGCGGCNGCGGCGAATNCTGGCCTGCATCGGNTTTTCTTGGTCGATGCACGGCGTCGGTACGGCNGCTTGCTCCCGTGGTTCGG]




>consensus_12091#1
ACAGAGCAAAANACGACGAGAACGAACGCAACGACACTTACACATACACACACGCTGCTA
GTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTGATGGCGTCGATGAGAACTNCGGCGG
CNGCGGCGAATNCTGGCCTGCATCGGNTTTTCTTGGTCGATGCACGGCGTCGGTACGGCN
GCTTGCTCCCGTGGTTCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12091#0      TCGCACAGAGCAAAACACGACGAGAACGAACGCAACGCACACTTACACATACACACACGC 60
consensus_12091#1      ----ACAGAGCAAAANACGACGAGAACGAACGCAACG-ACACTTACACATACACACACGC 55
                           *********** ********************* **********************

consensus_12091#0      TGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTGATGGCGTCGATGAGAACTGC 120
consensus_12091#1      TGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTGATGGCGTCGATGAGAACTNC 115
                       ********************************************************** *

consensus_12091#0      GGCGGCGGCGGCGA-TGCTGGCCTGCATCGCCGTCGTTCTGGCGA-GCACGGCGGCGG-A 177
consensus_12091#1      GGCGGCNGCGGCGAATNCTGGCCTGCATCGGNTTTTCTTGGTCGATGCACGGCGTCGGTA 175
                       ****** ******* * *************   *   *  * *** ******** *** *

consensus_12091#0      CGGCGCGCTGCTCCCGTGGTTCGGCGGCGGCGGCGCGCGGGACGAGGCGGTGCCGGAGTT 237
consensus_12091#1      CGGCNGCTTGCTCCCGTGGTTCGG------------------------------------ 199
                       ****    ****************                                    

consensus_12091#0      GGGGCTCCTGGCGGCGGCCGACCCGTTCCGGATCCTGGAGCACGTGCCGTTCGGGTTCGA 297
consensus_12091#1      ------------------------------------------------------------
                                                                                   

consensus_12091#0      CCGCGACGACGTGGCGATGCTGTCGATGGCGCGGGTGGACTGGCGGGAGACCGGCGACGC 357
consensus_12091#1      ------------------------------------------------------------
                                                                                   

consensus_12091#0      GCACGAGGTCGTGGTGGACGTGCCGGGGATGAGGAAGGAGGACCTGCGGGTGGAGGTGGA 417
consensus_12091#1      ------------------------------------------------------------
                                                                                   

consensus_12091#0      GGACAACCGGGTGCTGAGGATCAGCGGCGAGCGGCGGCGGGAGGAGACGACGGAGCAGAA 477
consensus_12091#1      ------------------------------------------------------------
                                                                                   

consensus_12091#0      GGGCGGCGGCGACCACTGGCACCGGGAGGAGCGGTCCTACGGCAGGTTCTGGCGGCAGCT 537
consensus_12091#1      ------------------------------------------------------------
                                                                                   

consensus_12091#0      CCGCCTCCCCGACAACGCCGACCTCGACTCCATCGCCGCCTCCCTCGACAACGGCGTGCT 597
consensus_12091#1      ------------------------------------------------------------
                                                                                   

consensus_12091#0      CACCGTCCGGTTCCGGAAGCTGGCGCCCGACCAGATCAAGGGCCCGCGCGTCGTCGGCAT 657
consensus_12091#1      ------------------------------------------------------------
                                                                                   

consensus_12091#0      CGCCTCCGCCGGCGGTGACGACGGTGGCAAGAAGAGCATCGGCGGCGCCGGCGAGGGGCA 717
consensus_12091#1      ------------------------------------------------------------
                                                                                   

consensus_12091#0      GAACCAGCAGGCCAAGAAGGTGGAGCTNTGAGCTGTGAAATTTGTCGAGTGGAAACTATG 777
consensus_12091#1      ------------------------------------------------------------
                                                                                   

consensus_12091#0      GTTGCGAGTGGTGTGTTGTCACTTGTTTGCAGAGCACATGTTCCGGTACATAAAATGCGT 837
consensus_12091#1      ------------------------------------------------------------
                                                                                   

consensus_12091#0      GTGGAGAGAAAATGTGAAGATGTATCGCACTTTCATCGTTGTGCAGATCTTAACTGAGGA 897
consensus_12091#1      ------------------------------------------------------------
                                                                                   

consensus_12091#0      ATAAGAAGCTTCAGTTCCCCATCTTAAAAAAAAAAAAAAAAAAAAA 943
consensus_12091#1      ----------------------------------------------