These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12091#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 943 fasta sequence [TCGCACAGAGCAAAACACGACGAGAACGAACGCAACGCACACTTACACATACACACACGCTGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTGATGGCGTCGATGAGAACTGCGGCGGCGGCGGCGATGCTGGCCTGCATCGCCGTCGTTCTGGCGAGCACGGCGGCGGACGGCGCGCTGCTCCCGTGGTTCGGCGGCGGCGGCGCGCGGGACGAGGCGGTGCCGGAGTTGGGGCTCCTGGCGGCGGCCGACCCGTTCCGGATCCT-GGAGCACGTGCCGTTCGGGTTCGACCGCGACGACGTGGCGATGCTGTCGATGGCGCGGGTGGACTGGCGGGAGACCGGCGACGCGCACGAGGTCGTGGTGGACGTGCCGGGGATGAGGAAGGAGGACCTGCGGGTGGAGGTGGAGGACAACCGGGTGCTGAGGATCAGCGGCGAGCGGCGGCGGGAGGAGACGACGGAGCAGAAGGGCGGCGGCGACCACTGGCACCGGGAGGAGCGGTCCTACGGCAGGTTCTGGCGGCAGCTCCGCCT-CCCCGACAACGCCGACCTCGACTCCATCGCCGCCTCCCTCGACAACGGCGTGCTCACCGTCCGGTTCCGGAAGCTGGCGCCCGACCAGATCAAGGGCCCGCGCGTCGTCGGCATCGCCTCCGCCGGCGGTGACGACGGTGGCAAGAAGAGCATCGGCGGCGCCGGCGAGGGGCAGAACCAGCAGGCCAAGAAGGTGGAGCTNTGAGCTGTGAAATTTGTCGAGTGGAAACTATGGTTGCGAGTGGTGTGTTGTCACTTGTTTGCAGAGCACATGTTCCGGTACATAAAATGCGTGTGGAGAGAAAATGTGAAGATGTATCGCACTTTCATCGTTGTGCAGATCTTAACTGAGGAATAAGAAGCTTCAGTTCCCCATCTTAA---AAAAAAAAAAAAAAAAAAA] [+] EMBL AK063700 [TCGCACAGAGCAAAACACGACGAGAACGAACGCAACGCACACTTACACATACACACACGCTGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTGATGGCGTCGATGAGAACTGCGGCGGCGGCGGCGATGCTGGCCTGCATCGCCGTCGTTCTGGCGAGCACGGCGGCGGACGGCGCGCTGCTCCCGTGGTTCGGCGGCGGCGGCGCGCGGGACGAGGCGGTGCCGGAGTTGGGGCTCCTGGCGGCGGCCGACCCGTTCCGGATCCT GGAGCACGTGCCGTTCGGGTTCGACCGCGACGACGTGGCGATGCTGTCGATGGCGCGGGTGGACTGGCGGGAGACCGGCGACGCGCACGAGGTCGTGGTGGACGTGCCGGGGATGAGGAAGGAGGACCTGCGGGTGGAGGTGGAGGACAACCGGGTGCTGAGGATCAGCGGCGAGCGGCGGCGGGAGGAGACGACGGAGCAGAAGGGCGGCGGCGACCACTGGCACCGGGAGGAGCGGTCCTACGGCAGGTTCTGGCGGCAGCTCCGCCT CCCCGACAACGCCGACCTCGACTCCATCGCCGCCTCCCTCGACAACGGCGTGCTCACCGTCCGGTTCCGGAAGCTGGCGCCCGACCAGATCAAGGGCCCGCGCGTCGTCGGCATCGCCTCCGCCGGCGGTGACGACGGTGGCAAGAAGAGCATCGGCGGCGCCGGCGAGGGGCAGAACCAGCAGGCCAAGAAGGTGGAGCTCTGAGCTGTGAAATTTGTCGAGTGGAAACTATGGTTGCGAGTGGTGTGTTGTCACTTGTTTGCAGAGCACATGTTCCGGTACATAAAATGCGTGTGGAGAGAAAATGTGAAGATGTATCGCACTTTCATCGTTGTGCAGATCTTAACTGAGGAATAAGAAGCTTCAGT ] [+] EMBL C97656 [ ACAGAGCAAAACACGACGAGAACGAACGCAACGCACACTTACACATACACACACGCTGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTGATGGCGTCGATGAGAACTGCGGCGGCGGCGGCGATGCTGGCCTGCATCG CGTCGTTCTGGCGAGCACGGCGNCGGACGGCGCGCTGCTCCCGTGGTTCGGCGGCGGCGGCGCGCGNGACGAGGCGGTGNCGTAGTTGGGGCTCCTGGCGGCGGCCGACCCGTTCCGGATCCT GGAGCACGTGNCGTTCGGGTTCGACCGCGACGACGTGGCGATGNTGTCGATGGCGNGGGTGGACTGGCGTGAGACCGGCGACGNGTACGA ] [+] EMBL C28677 [ CGAACGCAACGCACACTTACACATACACACACGCTGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTAATGGCGTCGATGAGAACTGCGGCGNNGGCGGCGAT ] [+] EMBL C29179 [ ACGCAACGCACACTTACACATACACACACGCTGCTAGTGCTAGCTAAGNTACCNACGAGAGAACGTCCGTAATGGCGTCGATGAGAACTGCGGCGGCGGCGGCGATGCTGGCCTGCNTCGCCGTCTTTTTGGCGAGCACGGCGGCGGACGGCGCGCTGCTCCCTTGGTTCGNCGGCGGCGGCGCGCGGAACGAGGCGGTGCCGAATTTGGGGCTCCTGGCGGCGGCCNACCCGTTCCGNTTCCT GGAGCACGTNCCGTTCGGTTTCAACCGNAACGACGTGGCGATGCTGTCna ] [+] EMBL OSC296 [ TCCNTGATGGCGTCGATGAGAACTGCGGCGNCGGCGGCGATGCTGGCCTGCATCGCCGTCGTTCTGGCGAGCACGGCGGCGGACGNCGCGCTGCTCCCGTGGTTCGGCGGCGGCGGCGCNNGNGACGAGGCGGTGCCGGAGTTGGGGCTCCTGGCNGTGNCCGACCCNTTCCGGATCCTNAGAGCA ] [+] EMBL AU181962 [ CCGGGAGGAGCGGTCCTACGGCAGGTTCTGGCGGCAGCTCCGCCT CCCCGACAACGCCGACCTCGACTCCATCGCCGCCTCCCTCGACAACGGCGTGCTCACCGTCCGGTTCCGGAAGCTGGCGCCCGACCAGATCAAGGGCCCGCGCGTCGTCGGCATCGCCTCCGCCGGCGGTGACGACGGTGGCAANAAGAGCATCGGCGGCGCCGGCGAGGGGCAGAACCAGCAGGCCAAGAAGGTGGAGCTNTGAGCTGTGAAATTTGTCGAGTGGAAACTATGGTTGCGAGTGGTGTGTTGTCACTTGTTTGCAGAGCACATGTTCCGGTACATAAAATGCGTGTGGAGAGAAAATGTGAAGATGTATCGCACTTTCATCGTTGTGCAGATNTTAACTGAGGAATAAGAAGCTTCAGTTCCCCATNTTAA AAAAAAAAAAAA ] [+] EMBL AU222543 [ CTGGCGGCAGTTCCGCCTCCCCCGACAACGNCGACCTGGACTCCATCGCCGCCTCCCTCGACAACGGCGTGCTCACCGTCCGGTTCCGGAAGCTGGCGCCCGACCAGATCAAGGGCCCGCGCGTCGTCGGCATCGCCTCCGCCGGCGGTGACGACGGTGGCAANAAGAGCATCGGCGGCGCCGGCGAGGGGCAGAACCAGCAGGCCAAGAAGGTGGAGCTNTGAGCTGTGAAATTTGTCGAGTGGAAACTATGGTTGCGAGTGGTGTGTTGTCACTTGTTTGCAGAGCACATGTTCCGGTACATAAAATGCGTGTGGAGAGAAAATGTGAAGATGTATCGCNCTTTCATCGTTGTGCAGATNTTAACTGAGGAATAAGAAGCTTCAGTTCCCCATCTTAATCGAGATAAAAAAAAAAAAAAA] [+] EMBL AU172415 [ CAACGCCGACCTTGACTCCATCGCCGCCTCCCTCGACAACGGCGTGCTCACCGTCCGGTTCCGGAAGCTGGCGNCCGNCCAGATCAAGGGCCCGCGCGTCGTCGGCATCGCCTCCGCCGGCGGTGACGACGGTGGCAAGAAGAGCATCGGCGGCGCCGGCGAGGGGCAGAACCAGCAGGCCAAGAAGGTGGAGCTNTGAGCTGTGAAATTTGTCGAGTGGAAACTATGGTTGCGAGTGGTGTGTTGTCACTTGTTTGCAGAGCACATGTTCCGGTACATAAAATGCGTGTGGAGAGAAAATGTGAAGATGTATCGCACTTTCATCGTTGTGCAGATCTTAACTGAGGAATAAGAAGCTTCAGTTCCCCATCTTAA AAAAA ] [+] EMBL AU101315 [ CCGGCGAGGGGCAGAACCAGCAGGCCAAGAAGGTGGAGCTCTGAGCTGTGAAATTTGTCGAGTGGAAACTATGGTTNCGAGTGGTGTGTTGTCACTTGTTTGCAGAGCACATGTTCCGGTACATAAAATGCGTGTGGAGAGAAAATGTGAAGATGTATCGCACTTTCATCGTTGTGCAGATCTTAACTGAGGAATAAGAAGCTTCAGTTCCCCATCTTAC AAAAAAAAA ] consensusID : consensus_12091#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [ACAGAGCAAAANACGACGAGAACGAACGCAACGACACTTACACATACACACACGCTGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTGATGGCGTCGATGAGAACTNCGGCGGCNGCGGCGAATNCTGGCCTGCATCGGNTTTTCTTGGTCGATGCACGGCGTCGGTACGGCNGCTTGCTCCCGTGGTTCGG] [+] EMBL AU069633 [ACAGAGCAAAANACGACGAGAACGAACGCAACGACACTTACACATACACACACGCTGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTGATGGCGTCGATGAGAACTNCGGCGGCNGCGGCGAATNCTGGCCTGCATCGGNTTTTCTTGGTCGATGCACGGCGTCGGTACGGCNGCTTGCTCCCGTGGTTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12091#0 TCGCACAGAGCAAAACACGACGAGAACGAACGCAACGCACACTTACACATACACACACGC 60 consensus_12091#1 ----ACAGAGCAAAANACGACGAGAACGAACGCAACG-ACACTTACACATACACACACGC 55 *********** ********************* ********************** consensus_12091#0 TGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTGATGGCGTCGATGAGAACTGC 120 consensus_12091#1 TGCTAGTGCTAGCTAAGATTCCGACGAGAGAACGTCCGTGATGGCGTCGATGAGAACTNC 115 ********************************************************** * consensus_12091#0 GGCGGCGGCGGCGA-TGCTGGCCTGCATCGCCGTCGTTCTGGCGA-GCACGGCGGCGG-A 177 consensus_12091#1 GGCGGCNGCGGCGAATNCTGGCCTGCATCGGNTTTTCTTGGTCGATGCACGGCGTCGGTA 175 ****** ******* * ************* * * * *** ******** *** * consensus_12091#0 CGGCGCGCTGCTCCCGTGGTTCGGCGGCGGCGGCGCGCGGGACGAGGCGGTGCCGGAGTT 237 consensus_12091#1 CGGCNGCTTGCTCCCGTGGTTCGG------------------------------------ 199 **** **************** consensus_12091#0 GGGGCTCCTGGCGGCGGCCGACCCGTTCCGGATCCTGGAGCACGTGCCGTTCGGGTTCGA 297 consensus_12091#1 ------------------------------------------------------------ consensus_12091#0 CCGCGACGACGTGGCGATGCTGTCGATGGCGCGGGTGGACTGGCGGGAGACCGGCGACGC 357 consensus_12091#1 ------------------------------------------------------------ consensus_12091#0 GCACGAGGTCGTGGTGGACGTGCCGGGGATGAGGAAGGAGGACCTGCGGGTGGAGGTGGA 417 consensus_12091#1 ------------------------------------------------------------ consensus_12091#0 GGACAACCGGGTGCTGAGGATCAGCGGCGAGCGGCGGCGGGAGGAGACGACGGAGCAGAA 477 consensus_12091#1 ------------------------------------------------------------ consensus_12091#0 GGGCGGCGGCGACCACTGGCACCGGGAGGAGCGGTCCTACGGCAGGTTCTGGCGGCAGCT 537 consensus_12091#1 ------------------------------------------------------------ consensus_12091#0 CCGCCTCCCCGACAACGCCGACCTCGACTCCATCGCCGCCTCCCTCGACAACGGCGTGCT 597 consensus_12091#1 ------------------------------------------------------------ consensus_12091#0 CACCGTCCGGTTCCGGAAGCTGGCGCCCGACCAGATCAAGGGCCCGCGCGTCGTCGGCAT 657 consensus_12091#1 ------------------------------------------------------------ consensus_12091#0 CGCCTCCGCCGGCGGTGACGACGGTGGCAAGAAGAGCATCGGCGGCGCCGGCGAGGGGCA 717 consensus_12091#1 ------------------------------------------------------------ consensus_12091#0 GAACCAGCAGGCCAAGAAGGTGGAGCTNTGAGCTGTGAAATTTGTCGAGTGGAAACTATG 777 consensus_12091#1 ------------------------------------------------------------ consensus_12091#0 GTTGCGAGTGGTGTGTTGTCACTTGTTTGCAGAGCACATGTTCCGGTACATAAAATGCGT 837 consensus_12091#1 ------------------------------------------------------------ consensus_12091#0 GTGGAGAGAAAATGTGAAGATGTATCGCACTTTCATCGTTGTGCAGATCTTAACTGAGGA 897 consensus_12091#1 ------------------------------------------------------------ consensus_12091#0 ATAAGAAGCTTCAGTTCCCCATCTTAAAAAAAAAAAAAAAAAAAAA 943 consensus_12091#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||