These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1521 fasta sequence [GCCTTCTTCTTCACCTGGGTTTCGCCCCCATAAGGCCGGAGATGGGATGCTTCAATTCCAAGCCAAACGACACCGGTGCGATCAGAAGAAGACCCGGGAGCATAGGCGAGGTGGCTGTGTTCGTGCCTGGATTGAGAGTACCCGAGAGCTCGGATGAGCTGCCCCTTCAGCCGCTAGGTGATGGCCTCCCAAGGAGGCTCACCGAACGCCTGGCCGCGTTGAGGAATCGGATAATTGTCATGGCTGCTCATGAGGCACTGTACATGACCAAGCCCACCTGGAGGATCACCATCACTCAGCATGGGGGGTCTAAGTCAGCTGATCTTCTGCAAGCTTTGGAGGATTACTTGCCCACTCTTCTTGGCCTAGTAAAAGATGGGAGCGAGTTGGAAGATAAGGTACAGTTTGCATGGATGAACCAAGAGGATGACGCAGAGGATACGTCAATGCCCAGTGCTTGGTATGAGGTGCTATCAGTTCTACACTTGATGGCTCTGCTGCGTTTGTCCCAAGCAAATTCCCTTCTTGTTCCAAAGACATCCATTGAGGGATACCATGCTAAGGTATCTGAAGAAAACAAACGAGCTTCAGTGGAGATATTTCTCAAGGCAGCCGGATACTTGGAGTGTGCAATCCAGCATGTTCTACCTAAGATATCGCCGGAGAAAAGGAAAGGTCTTCCTGTGGACTTAGCTGAAGGAATCCTGAAAGCTATCTGCATGCAAGCCCTGGGTCAAGCAATTGATGTTCAGCTTGGATTGGCAATTGACAGTCCAAAGGCTACCTTGGCAGTGAAGAGGAGGCTGGCATGTGAGATGGTCAAGTGCTGGCAGCAGGCACATGGAAGCATTTCGGACCTACCTCTGCTTGATGGCTGGGCAGAAAAGCACAGGCTCTTTGTTACATGGAAACACATCGAAGCAAAAGCTGCGGCATACTACTACCATGGACTAATCCTTGATGAAGGAAACAGTGAGAAATCTCATAGGACGGCGGTGGCAGCGCTGCAATCAGCGGAGGAGTTGCTCAAAGAGAGCGAAGCTGCATGTGAAGCCTTCCATGCGGCATCTCCTGTTTCAAGAAGCCCGCCGCTGTGGGGATCGATGAGGTATCTTCAGGAGAAGATACACAAGGAGTCGTCGTGCAAAGTTCGGATCAACAAGGACCTCTACAACAAGGACAACATCATCATCCATGACCATGCTGACAGCGCGCCGCCGCTGCCGGACTTCGCCGTGGCTCTCAAACCCGACGAGTATCGCCTTCCTCCCCCACTCACTGACACCAATTAAGGATCGAGTCGACAAGGGAGAAATTATTAAGGTCCAAGGCATCATGCAGATGCAGAGGAGGAAGAATCAATCAAATAAAATCTATTATGTATATTCATTCATATTGTGCCATGTATGTATGCATGGGTGTCACACCGCACCACATGTTGCAAGAAAAATGAAAGAGAAGCTAGTTACTACTACCTCCATACATATATGTATGACATTGACTAGTATAAATTTGAACTAG] [+] EMBL AK070854 [GCCTTCTTCTTCACCTGGGTTTCGCCCCCATAAGGCCGGAGATGGGATGCTTCAATTCCAAGCCAAACGACACCGGTGCGATCAGAAGAAGACCCGGGAGCATAGGCGAGGTGGCTGTGTTCGTGCCTGGATTGAGAGTACCCGAGAGCTCGGATGAGCTGCCCCTTCAGCCGCTAGGTGATGGCCTCCCAAGGAGGCTCACCGAACGCCTGGCCGCGTTGAGGAATCGGATAATTGTCATGGCTGCTCATGAGGCACTGTACATGACCAAGCCCACCTGGAGGATCACCATCACTCAGCATGGGGGGTCTAAGTCAGCTGATCTTCTGCAAGCTTTGGAGGATTACTTGCCCACTCTTCTTGGCCTAGTAAAAGATGGGAGCGAGTTGGAAGATAAGGTACAGTTTGCATGGATGAACCAAGAGGATGACGCAGAGGATACGTCAATGCCCAGTGCTTGGTATGAGGTGCTATCAGTTCTACACTTGATGGCTCTGCTGCGTTTGTCCCAAGCAAATTCCCTTCTTGTTCCAAAGACATCCATTGAGGGATACCATGCTAAGGTATCTGAAGAAAACAAACGAGCTTCAGTGGAGATATTTCTCAAGGCAGCCGGATACTTGGAGTGTGCAATCCAGCATGTTCTACCTAAGATATCGCCGGAGAAAAGGAAAGGTCTTCCTGTGGACTTAGCTGAAGGAATCCTGAAAGCTATCTGCATGCAAGCCCTGGGTCAAGCAATTGATGTTCAGCTTGGATTGGCAATTGACAGTCCAAAGGCTACCTTGGCAGTGAAGAGGAGGCTGGCATGTGAGATGGTCAAGTGCTGGCAGCAGGCACATGGAAGCATTTCGGACCTACCTCTGCTTGATGGCTGGGCAGAAAAGCACAGGCTCTTTGTTACATGGAAACACATCGAAGCAAAAGCTGCGGCATACTACTACCATGGACTAATCCTTGATGAAGGAAACAGTGAGAAATCTCATAGGACGGCGGTGGCAGCGCTGCAATCAGCGGAGGAGTTGCTCAAAGAGAGCGAAGCTGCATGTGAAGCCTTCCATGCGGCATCTCCTGTTTCAAGAAGCCCGCCGCTGTGGGGATCGATGAGGTATCTTCAGGAGAAGATACACAAGGAGTCGTCGTGCAAAGTTCGGATCAACAAGGACCTCTACAACAAGGACAACATCATCATCCATGACCATGCTGACAGCGCGCCGCCGCTGCCGGACTTCGCCGTGGCTCTCAAACCCGACGAGTATCGCCTTCCTCCCCCACTCACTGACACCAATTAAGGATCGAGTCGACAAGGGAGAAATTATTAAGGTCCAAGGCATCATGCAGATGCAGAGGAGGAAGAATCAATCAAATAAAATCTATTATGTATATTCATTCATATTGTGCCATGTATGTATGCATGGGTGTCACACCGCACCACATGTTGCAAGAAAAATGAAAGAGAAGCTAGTTACTACTACCTCCATACATATATGTATGACATTGACTAGTATAAATTTGAACTAG] consensusID : consensus_121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence [GNAGGGCTGATGGTAAGGGAGGTTGGAGCCAGCTGAGTTGAAATATTTCTCAAGGCAGCTGGGTACTTAGAGTGTGCTATCCAGCACGCTCTCCTGAAGATATCGCCTGAAAAAAGGTCTTCCTGTGGACCTAACTGAAGGAATCCTGAAAGCTATCTGCATGCAAGCCTCAGGGTCAAATA] [+] EMBL AA750208 [GNAGGGCTGATGGTAAGGGAGGTTGGAGCCAGCTGAGTTGAAATATTTCTCAAGGCAGCTGGGTACTTAGAGTGTGCTATCCAGCACGCTCTCCTGAAGATATCGCCTGAAAAAAGGTCTTCCTGTGGACCTAACTGAAGGAATCCTGAAAGCTATCTGCATGCAAGCCTCAGGGTCAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_121#0 GCCTTCTTCTTCACCTGGGTTTCGCCCCCATAAGGCCGGAGATGGGATGCTTCAATTCCA 60 consensus_121#1 ------------------------------------------------------------ consensus_121#0 AGCCAAACGACACCGGTGCGATCAGAAGAAGACCCGGGAGCATAGGCGAGGTGGCTGTGT 120 consensus_121#1 ------------------------------------------------------------ consensus_121#0 TCGTGCCTGGATTGAGAGTACCCGAGAGCTCGGATGAGCTGCCCCTTCAGCCGCTAGGTG 180 consensus_121#1 ------------------------------------------------------------ consensus_121#0 ATGGCCTCCCAAGGAGGCTCACCGAACGCCTGGCCGCGTTGAGGAATCGGATAATTGTCA 240 consensus_121#1 ------------------------------------------------------------ consensus_121#0 TGGCTGCTCATGAGGCACTGTACATGACCAAGCCCACCTGGAGGATCACCATCACTCAGC 300 consensus_121#1 ------------------------------------------------------------ consensus_121#0 ATGGGGGGTCTAAGTCAGCTGATCTTCTGCAAGCTTTGGAGGATTACTTGCCCACTCTTC 360 consensus_121#1 ------------------------------------------------------------ consensus_121#0 TTGGCCTAGTAAAAGATGGGAGCGAGTTGGAAGATAAGGTACAGTTTGCATGGATGAACC 420 consensus_121#1 ------------------------------------------------------------ consensus_121#0 AAGAGGATGACGCAGAGGATACGTCAATGCCCAGTGCTTGGTATGAGGTGCTATCAGTTC 480 consensus_121#1 ------------------------------------------------------------ consensus_121#0 TACACTTGATGGCTCTGCTGCGTTTGTCCCAAGCAAATTCCCTTCTTGTTCCAAAGACAT 540 consensus_121#1 ------------------------------------------------------------ consensus_121#0 CCATTGAGGGATACCATGCTAAGGTATCTGAAGAAAACAAACGAGCTTCAGTGGAGATAT 600 consensus_121#1 ----GNAGGGCTG--ATGGTAAGGGAGGTTGG-------AGCCAGCTG-AGTTGAAATAT 46 **** * *** ***** * * * * **** *** ** **** consensus_121#0 TTCTCAAGGCAGCCGGATACTTGGAGTGTGCAATCCAGCATGTTCTACCTAAGATATCGC 660 consensus_121#1 TTCTCAAGGCAGCTGGGTACTTAGAGTGTGCTATCCAGCACGCTCTCCTGAAGATATCGC 106 ************* ** ***** ******** ******** * *** * ********** consensus_121#0 CGGAGAAAAGGAAAGGTCTTCCTGTGGACTTAGCTGAAGGAATCCTGAAAGCTATCTGCA 720 consensus_121#1 CTGAAAAAAGG-----TCTTCCTGTGGACCTAACTGAAGGAATCCTGAAAGCTATCTGCA 161 * ** ****** ************* ** *************************** consensus_121#0 TGCAAGCCCT-GGGTCAAGCAATTGATGTTCAGCTTGGATTGGCAATTGACAGTCCAAAG 779 consensus_121#1 TGCAAGCCTCAGGGTCAAATA--------------------------------------- 182 ******** ******* * consensus_121#0 GCTACCTTGGCAGTGAAGAGGAGGCTGGCATGTGAGATGGTCAAGTGCTGGCAGCAGGCA 839 consensus_121#1 ------------------------------------------------------------ consensus_121#0 CATGGAAGCATTTCGGACCTACCTCTGCTTGATGGCTGGGCAGAAAAGCACAGGCTCTTT 899 consensus_121#1 ------------------------------------------------------------ consensus_121#0 GTTACATGGAAACACATCGAAGCAAAAGCTGCGGCATACTACTACCATGGACTAATCCTT 959 consensus_121#1 ------------------------------------------------------------ consensus_121#0 GATGAAGGAAACAGTGAGAAATCTCATAGGACGGCGGTGGCAGCGCTGCAATCAGCGGAG 1019 consensus_121#1 ------------------------------------------------------------ consensus_121#0 GAGTTGCTCAAAGAGAGCGAAGCTGCATGTGAAGCCTTCCATGCGGCATCTCCTGTTTCA 1079 consensus_121#1 ------------------------------------------------------------ consensus_121#0 AGAAGCCCGCCGCTGTGGGGATCGATGAGGTATCTTCAGGAGAAGATACACAAGGAGTCG 1139 consensus_121#1 ------------------------------------------------------------ consensus_121#0 TCGTGCAAAGTTCGGATCAACAAGGACCTCTACAACAAGGACAACATCATCATCCATGAC 1199 consensus_121#1 ------------------------------------------------------------ consensus_121#0 CATGCTGACAGCGCGCCGCCGCTGCCGGACTTCGCCGTGGCTCTCAAACCCGACGAGTAT 1259 consensus_121#1 ------------------------------------------------------------ consensus_121#0 CGCCTTCCTCCCCCACTCACTGACACCAATTAAGGATCGAGTCGACAAGGGAGAAATTAT 1319 consensus_121#1 ------------------------------------------------------------ consensus_121#0 TAAGGTCCAAGGCATCATGCAGATGCAGAGGAGGAAGAATCAATCAAATAAAATCTATTA 1379 consensus_121#1 ------------------------------------------------------------ consensus_121#0 TGTATATTCATTCATATTGTGCCATGTATGTATGCATGGGTGTCACACCGCACCACATGT 1439 consensus_121#1 ------------------------------------------------------------ consensus_121#0 TGCAAGAAAAATGAAAGAGAAGCTAGTTACTACTACCTCCATACATATATGTATGACATT 1499 consensus_121#1 ------------------------------------------------------------ consensus_121#0 GACTAGTATAAATTTGAACTAG 1521 consensus_121#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||