These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12100#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1249 fasta sequence [AACCCAACCTCAAACACAACCAATCCACCTCCGATTCCTTCATCCGCCGCCACCGCCGCCGTCGCCGCCGCCGGGATCCCGCCCGCAACCGCACCGCGGCGGCTCCTTCCCTTCCTCCAG--ACCAACCAGATTGTGGGATCTTCCTAGAGAGCGCTGTTGTCCTGCACGAGTAGAATAGCAGATGGCGAGGATAAAGCCGAAGCAATTGCTAATTCAAAGCAAGACGAAGAAGGCCCCAACACGGATCAGTTACTCCACTATCGTTACTTGGAACCTAATTGTTATCTTGGTTGCGCTATCCCTCTATGCTACCTACAGGCATTGGCATCACAGGCCAATGC-TCGAGACTGAAATGGATCTCCCTCGTGCTGAGCATGTTGGAAGATCTGAGGATTCCACGAAGACTAGTAGACCAAGCTATGCGGTTATTGATACTGCCAAAGGCTCAATTACTATAGAAATTTACAAAGATGCTTCTGCTGATGTTGTGGATAGATTTGTTAGCTTGTGCAAGAGTAACCATTTTAAAGGAATGCCGTTTCGTCATGTCATCAAAAACTTTGTAATTCAAGGGGGTGATTTCGATTTCAATGGTGCTGCCCAGGAATGGATACTGAAAGCCAAAGCCAGTGGAGAAAACGCTCTAAGTCCAAAGCACGAGGCATTCATGATCGGGACTACGAAGAATCCTAATAATAAAGGATTTGATCTTTTTATCACAACTGCTCCAATTCCTGACTTGAATGACAAGCTTGTTGTATTTGGGCAAGTTATCAATGGACA-AGATATTGTTCAGGAGATCGAAGAAGTTGATACTGATGAGCATTACCAGCCAAAAACCCCTATCGGCATACTCAACATCACGCTAAAACAGCA-AGCTTTGAGCTGATAGCTTGTTGTCCTTACCTGAAAATGACTTATCTGTACTCCAAGAGGGTCCATACATCGCCTCCAATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCAAAGAAAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTTGTGTATAAATTTATCCCTGGTGTCATTCGGCTGTCAGTTTTTGCAGGCATTACAGTGTATTTTGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCATTTGGATCATGAATCATAGAACTTGGAATTCATAGTTAGTTATGAGGAATAAGTTCATCTGAGGTCCCTTAAAAAAAAAA] [+] EMBL AK066346 [AACCCAACCTCAAACACAACCAATCCACCTCCGATTCCTTCATCCGCCGCCACCGCCGCCGTCGCCGCCGCCGGGATCCCGCCCGCAACCGCACCGCGGCGGCTCCTTCCCTTCCTCCAG ACCAACCAGATTGTGGGATCTTCCTAGAGAGCGCTGTTGTCCTGCACGAGTAGAATAGCAGATGGCGAGGATAAAGCCGAAGCAATTGCTAATTCAAAGCAAGACGAAGAAGGCCCCAACACGGATCAGTTACTCCACTATCGTTACTTGGAACCTAATTGTTATCTTGGTTGCGCTATCCCTCTATGCTACCTACAGGCATTGGCATCACAGGCCAATGC TCGAGACTGAAATGGATCTCCCTCGTGCTGAGCATGTTGGAAGATCTGAGGATTCCACGAAGACTAGTAGACCAAGCTATGCGGTTATTGATACTGCCAAAGGCTCAATTACTATAGAAATTTACAAAGATGCTTCTGCTGATGTTGTGGATAGATTTGTTAGCTTGTGCAAGAGTAACCATTTTAAAGGAATGCCGTTTCGTCATGTCATCAAAAACTTTGTAATTCAAGGGGGTGATTTCGATTTCAATGGTGCTGCCCAGGAATGGATACTGAAAGCCAAAGCCAGTGGAGAAAACGCTCTAAGTCCAAAGCACGAGGCATTCATGATCGGGACTACGAAGAATCCTAATAATAAAGGATTTGATCTTTTTATCACAACTGCTCCAATTCCTGACTTGAATGACAAGCTTGTTGTATTTGGGCAAGTTATCAATGGACA AGATATTGTTCAGGAGATCGAAGAAGTTGATACTGATGAGCATTACCAGCCAAAAACCCCTATCGGCATACTCAACATCACGCTAAAACAGCA AGCTTTGAGCTGATAGCTTGTTGTCCTTACCTAAAAATGACTTATCTGTACTCCAAGAGGGTCCATACATCGCCTCCAATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCAAAGAAAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTTGTGTATAAATTTATCCCTGGTGTCATTCGGCTGTCAGTTTTTGCAGGCATTACAGTGTATTTTGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCATTTGGATCATGAATCATAGAACTTGGA ] [+] EMBL AU197236 [ ACACAACCAATCCACCTCCGATTCCTTCATCCGCCGCCACCGCCGCCGTCGCCGCCGCCGGGATCCCGCCCGCAACCGCACCGCGTCGGCTCCTTCCCTTCCT CCAGATTGTGGGATCTTCCTAGAGAGCGCTGTTGTCCTGCACGAGTAGAATAGCAGATGGCGAGGATAAAGCCGAAGCAATTGCTAATTCAAAGCAAGACGAAGAAGGCCCCAACACGGATCAGTTACTCCACTATCGTTACTTGGAACCTAATTGTTATCTTGGTTGCGCTATCCCTCTATGCTACCTACAGGCATTGGCATCACAGGNCAATGCTTCGAGACTta ] [+] EMBL CF308740 [ CACCTCCGATTCCTTCATCCGCCGCCACCGCCGCCGTCGCCGCCGCCGGGATCCCTCCCGCAACCGCACCGCGGCGGCTCCTTCCCTTCCTCCAGGTACCAACCAGATTGTGGGATCTTCCTAGAGAGCGCTGTTGTCCTGCACGAGTAGAATAGCAGATGGCGAGGATAAAGCCGAAGCAATTGCTAATTCAAAGCAAGACGAAGAAGGCCCCAACACGGATCAGTTACTCCACTATCGTTACTTGGAACCTAATTGTTATCTTGGTTGCGCTATCCCTCTATGCTACCTACAGGCATTGGCATCACAGGCCAATGC TCGAGACTGAAATGGATCTCCCTCGTGCTGAGCATGTTGGAAGATCTGAGGATTCCACGAAGACTAGTAGACCAAGCTATGCGGTTATTGATACTGCCAAAGGCTCAATTACTATAGAAATTTACAAAGATGCTTCTGCTGATGTTGTGGATAGATTTGTTAGCTTGTGCAAGAGTAACCATTTTAAAGGAATGCCGTTTCGTCATGTCATCAAAAAC ] [+] EMBL CA762216 [ GGGGTGATTTCGATTTCAATGGTGCTGCCCAGGAATGGATACTGAAAGCCAAAGCCAGTGGAGAAAACGCTCTAAGTCCAAAGCACGAGGCATTCATGATCGGGACTACGAAGAATCCTAATAATAAAGGATTTGATCTTTTTATCACAACTGCTCCAATTCCTGACTTGAATGACAAGCTTGTTGTATTTGGGCAAGTTATCAATGGACA AGATATTGTTCAGGAGATCGAAGAAGTTGATACTGATGAGCATTACCAGCCAAAAACCCCTATCGGCATACTCAACATCACGCTAAAACAGCA AGCTTTGAGCTGATAGCTTGTTGTCCTTACCTGAAAATGACTTATCTGTACTCCAAGAGGGTCCATACATCGCCTCCAATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCAAAGAAAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTTGTGTATAAATTTATCCCTGGTGTCGTTCGGCTGTCAGTTTTTGCAGGCATTACAGTGTATTTTGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCATTTGGATCATGAATCATAGAACTTGGAATCCATAGTTAGTTATGAGGAATAAGTTCATCTGAGGTCCCTTAAAAAAAAAA] [-] EMBL CF308741 [ CGAGGCATTCATGATCGGGACTACGAAGAATCCTAATAATAAAGGATTTGATCTTTTTATCACAACTGCTCCAATTCCTGACTTGAATGACAAGCTTGTTGTATTTGGGCAAGTTATCAATGGACA AGATATTGTTCAGGAGATCGAAGAAGTTGATACTGATGAGCATTACCAGCCAAAAACCCCTATCGGCATACTCAACATCACGCTAAAACAGCA AGCTTTGAGCTGATAGCTTGTTGTCCTTACCTGAAAATGACTTATCTGTACTCCAAGAGGGTCCATACATCGCCTCCAATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCAAAGAAAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTTGTGTATAAATTTATCCCTGGTGTCATTCGGCTGTCAGTTTTTGCAGGCATTACAGTGTATTTTGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCATTTGGATCATGAATCATAGAACTTGGAATTCATAGTTAGTTAaaaaaa ] [+] EMBL BI811847 [ ACACAGATATTGTTCAGGAGATCGAAGAAGTTGATACTGATGAGCCTTACCCGCCCAAAACCCCTATCGGCATACTCAACATCACGCTAAAACAGCACAGCTTTGAGCTGATAGCTTGTTGTCCTTACCTGAAAATGACTTATCTGTACTCCCAGAGGGTCCATACATCGCCTCCCATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCCAAGAAAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTTGTGTATAAATTTATCCCTGGTGTCATTCGGCTGTCAGTTTTTGCAGGCATTACAGTGTATTTTGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCCTTTGGATCATGAATCATAGAACTTGGAATCCATAGTTAGTTATGAGGAATAAaaaaaaaa ] [+] EMBL CF311658 [ GCTGATAGCTTGTTGTCCTTACCTGAAAATGACTTATCTGTACTCCAAGAGGGTCCATACATCGCCTCCAATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCAAAGAAAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTTGTGTATAAATTTATCCCTGGTGTCATTCGGCTGTCAGTTTTTGCAGGCATTACAGTGTATTTTGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCATTTGGATCATGAATCATAGAACTTGGAATTCATAGTTAaaaa ] [+] EMBL CF311008 [ CTGATAGCTTGTTGCCCCTACCTGAGAATGACTTATCTGTACTCCAAGAGGGTCCATACATCGCCTCCAATAGCTGCTGAAATCGATCATGATTATGGCTTCCTCTACAAGCCCATGG ] [+] EMBL CF301922 [ GTACTCCAAGAGGGTCCATACATCGCCTCCAATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCAAAGAAAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTTGTGTATAAATTTATCCCTGGTGTCATTCGGCTGTCAGTTTTTGCAGGCTTTACAGTGTATTTTGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCATTTGGATCATGAATCATAGAACTTGGAATTCATAGTTAGTTATGAGGAATAAGTTCATCTGAG ] consensusID : consensus_12100#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence [CGAGATTCCAYTDNGACTAGTAGACCAAGCTATGCGBBNTATTGATACTGCCANNGGCTCARTTACTATAGAAATTTACAAAGATGCTTCTGCTGATGTTGTGGATAGATTTGTTAGCTTGTRCAAGAGTAACCATTTTAAAGGAATGCCGTTTCGWCATGTCATCAAAAACTTTGTAATTCARGGGGGTGWTTTCGWTTWCAATGGTGCTCCCCAGGAATGGATACTGAAAGCCAAAGCCAGGTGGAGAAAACCBTTCTARCGYCCAAASGACGGRGBCATKCAYCGVCCCGBSCCTASGD] [+] EMBL BE230732 [CGAGATTCCAYTDNGACTAGTAGACCAAGCTATGCGBBNTATTGATACTGCCANNGGCTCARTTACTATAGAAATTTACAAAGATGCTTCTGCTGATGTTGTGGATAGATTTGTTAGCTTGTRCAAGAGTAACCATTTTAAAGGAATGCCGTTTCGWCATGTCATCAAAAACTTTGTAATTCARGGGGGTGWTTTCGWTTWCAATGGTGCTCCCCAGGAATGGATACTGAAAGCCAAAGCCAGGTGGAGAAAACCBTTCTARCGYCCAAASGACGGRGBCATKCAYCGVCCCGBSCCTASGD] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12100#0 AACCCAACCTCAAACACAACCAATCCACCTCCGATTCCTTCATCCGCCGCCACCGCCGCC 60 consensus_12100#1 ------------------------------------------------------------ consensus_12100#0 GTCGCCGCCGCCGGGATCCCGCCCGCAACCGCACCGCGGCGGCTCCTTCCCTTCCTCCAG 120 consensus_12100#1 ------------------------------------------------------------ consensus_12100#0 ACCAACCAGATTGTGGGATCTTCCTAGAGAGCGCTGTTGTCCTGCACGAGTAGAATAGCA 180 consensus_12100#1 ------------------------------------------------------------ consensus_12100#0 GATGGCGAGGATAAAGCCGAAGCAATTGCTAATTCAAAGCAAGACGAAGAAGGCCCCAAC 240 consensus_12100#1 ------------------------------------------------------------ consensus_12100#0 ACGGATCAGTTACTCCACTATCGTTACTTGGAACCTAATTGTTATCTTGGTTGCGCTATC 300 consensus_12100#1 ------------------------------------------------------------ consensus_12100#0 CCTCTATGCTACCTACAGGCATTGGCATCACAGGCCAATGCTCGAGACTGAAATGGATCT 360 consensus_12100#1 ------------------------------------------------------------ consensus_12100#0 CCCTCGTGCTGAGCATGTTGGAAGATCTGAGGATTCCACGAAGACTAGTAGACCAAGCTA 420 consensus_12100#1 ----------------------------CGAGATTCCAYTDNGACTAGTAGACCAAGCTA 32 ******* ****************** consensus_12100#0 TGCGGTT-ATTGATACTGCCAAAGGCTCAATTACTATAGAAATTTACAAAGATGCTTCTG 479 consensus_12100#1 TGCGBBNTATTGATACTGCCANNGGCTCARTTACTATAGAAATTTACAAAGATGCTTCTG 92 **** ************* ****** ****************************** consensus_12100#0 CTGATGTTGTGGATAGATTTGTTAGCTTGTGCAAGAGTAACCATTTTAAAGGAATGCCGT 539 consensus_12100#1 CTGATGTTGTGGATAGATTTGTTAGCTTGTRCAAGAGTAACCATTTTAAAGGAATGCCGT 152 ****************************** ***************************** consensus_12100#0 TTCGTCATGTCATCAAAAACTTTGTAATTCAAGGGGGTGATTTCGATTTCAATGGTGCTG 599 consensus_12100#1 TTCGWCATGTCATCAAAAACTTTGTAATTCARGGGGGTGWTTTCGWTTWCAATGGTGCTC 212 **** ************************** ******* ***** ** ********** consensus_12100#0 CCCAGGAATGGATACTGAAAGCCAAAGCCAG-TGGAGAAAAC-GCTCTAA-GTCCAAAGC 656 consensus_12100#1 CCCAGGAATGGATACTGAAAGCCAAAGCCAGGTGGAGAAAACCBTTCTARCGYCCAAASG 272 ******************************* ********** **** * ***** consensus_12100#0 ACG-AGGCATTCAT--GATCGGGACTACGAAGAATCCTAATAATAAAGGATTTGATCTTT 713 consensus_12100#1 ACGGRGBCATKCAYCGVCCCGBSCCTASGD------------------------------ 302 *** * *** ** ** *** * consensus_12100#0 TTATCACAACTGCTCCAATTCCTGACTTGAATGACAAGCTTGTTGTATTTGGGCAAGTTA 773 consensus_12100#1 ------------------------------------------------------------ consensus_12100#0 TCAATGGACAAGATATTGTTCAGGAGATCGAAGAAGTTGATACTGATGAGCATTACCAGC 833 consensus_12100#1 ------------------------------------------------------------ consensus_12100#0 CAAAAACCCCTATCGGCATACTCAACATCACGCTAAAACAGCAAGCTTTGAGCTGATAGC 893 consensus_12100#1 ------------------------------------------------------------ consensus_12100#0 TTGTTGTCCTTACCTGAAAATGACTTATCTGTACTCCAAGAGGGTCCATACATCGCCTCC 953 consensus_12100#1 ------------------------------------------------------------ consensus_12100#0 AATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCAAAGA 1013 consensus_12100#1 ------------------------------------------------------------ consensus_12100#0 AAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTTGT 1073 consensus_12100#1 ------------------------------------------------------------ consensus_12100#0 GTATAAATTTATCCCTGGTGTCATTCGGCTGTCAGTTTTTGCAGGCATTACAGTGTATTT 1133 consensus_12100#1 ------------------------------------------------------------ consensus_12100#0 TGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCATTTGGATCATGAATCATAGAACTT 1193 consensus_12100#1 ------------------------------------------------------------ consensus_12100#0 GGAATTCATAGTTAGTTATGAGGAATAAGTTCATCTGAGGTCCCTTAAAAAAAAAA 1249 consensus_12100#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||